Wall clock time and date at job start Tue Mar 31 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99698 * 2 1 4 4 H 1.48501 * 109.47477 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47172 * 300.00041 * 3 2 1 6 6 H 1.48502 * 109.47210 * 59.99926 * 3 2 1 7 7 C 1.38810 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99423 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00392 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99724 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46600 * 179.97438 * 10 9 7 12 12 C 1.53788 * 113.61334 * 174.99669 * 11 10 9 13 13 C 1.53783 * 87.08043 * 139.98082 * 12 11 10 14 14 N 1.46501 * 113.61350 * 89.11916 * 13 12 11 15 15 C 1.34773 * 120.00045 * 156.53232 * 14 13 12 16 16 O 1.21278 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00012 * 179.97438 * 15 14 13 18 18 C 1.50698 * 109.47290 * 179.97438 * 17 15 14 19 19 C 1.36108 * 120.12713 * 264.98042 * 18 17 15 20 20 C 1.39318 * 121.06886 * 179.97438 * 19 18 17 21 21 C 1.36179 * 120.86533 * 0.07008 * 20 19 18 22 22 C 1.40384 * 119.61244 * 359.90676 * 21 20 19 23 23 C 1.40777 * 121.38008 * 179.78645 * 22 21 20 24 24 C 1.36573 * 118.15205 * 179.80616 * 23 22 21 25 25 C 1.39341 * 119.93796 * 0.49645 * 24 23 22 26 26 N 1.31078 * 121.75112 * 359.72301 * 25 24 23 27 27 C 1.33686 * 121.32444 * 0.02562 * 26 25 24 28 28 C 1.53784 * 87.17295 * 334.52754 * 13 12 11 29 29 H 0.96999 * 120.00750 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99501 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47546 * 60.00134 * 10 9 7 32 32 H 1.09000 * 109.47202 * 299.99656 * 10 9 7 33 33 H 1.09000 * 112.85221 * 43.80256 * 11 10 9 34 34 H 1.09003 * 113.61317 * 25.43780 * 12 11 10 35 35 H 1.08999 * 113.61277 * 254.53052 * 12 11 10 36 36 H 1.09000 * 113.61644 * 219.93398 * 13 12 11 37 37 H 0.97001 * 119.99714 * 336.52606 * 14 13 12 38 38 H 1.09005 * 109.46915 * 59.99333 * 17 15 14 39 39 H 1.09003 * 109.46924 * 299.99650 * 17 15 14 40 40 H 1.08000 * 119.46913 * 0.02562 * 19 18 17 41 41 H 1.07992 * 119.56580 * 180.02562 * 20 19 18 42 42 H 1.07992 * 120.19104 * 179.97438 * 21 20 19 43 43 H 1.08002 * 120.92806 * 0.28428 * 23 22 21 44 44 H 1.08001 * 120.03101 * 180.23980 * 24 23 22 45 45 H 1.08001 * 119.11998 * 179.73496 * 25 24 23 46 46 H 1.09002 * 113.61209 * 140.01962 * 28 13 12 47 47 H 1.08999 * 113.61269 * 270.92285 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.7306 -6.2001 -0.1227 13 6 0.7055 -6.6997 0.9090 14 7 -0.5382 -7.1907 0.3102 15 6 -1.3104 -8.0664 0.9834 16 8 -0.9756 -8.4483 2.0847 17 6 -2.5900 -8.5711 0.3677 18 6 -3.2597 -9.5310 1.3168 19 6 -3.0538 -10.8706 1.1918 20 6 -3.6626 -11.7756 2.0587 21 6 -4.4832 -11.3438 3.0560 22 6 -4.7178 -9.9688 3.2148 23 6 -5.5627 -9.4818 4.2301 24 6 -5.7412 -8.1313 4.3272 25 6 -5.1029 -7.2791 3.4284 26 7 -4.3205 -7.7362 2.4813 27 6 -4.0994 -9.0464 2.3344 28 6 0.6168 -5.2486 1.4105 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6849 -3.7145 0.8894 32 1 2.6848 -3.7144 -0.8905 33 1 0.2376 -4.6705 -0.6949 34 1 2.7591 -6.2220 0.2378 35 1 1.6163 -6.6541 -1.1071 36 1 1.1240 -7.3900 1.6414 37 1 -0.8058 -6.8855 -0.5708 38 1 -2.3657 -9.0829 -0.5682 39 1 -3.2551 -7.7301 0.1715 40 1 -2.4075 -11.2381 0.4085 41 1 -3.4820 -12.8334 1.9377 42 1 -4.9497 -12.0548 3.7215 43 1 -6.0499 -10.1569 4.9181 44 1 -6.3798 -7.7245 5.0974 45 1 -5.2568 -6.2136 3.5146 46 1 -0.3961 -4.9351 1.6631 47 1 1.3413 -5.0109 2.1894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733951980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:18 Heat of formation + Delta-G solvation = 23.120614 kcal Electronic energy + Delta-G solvation = -27876.104718 eV Core-core repulsion = 24023.339532 eV Total energy + Delta-G solvation = -3852.765186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.91538 -41.11251 -39.48198 -37.99609 -36.34016 -35.03358 -34.39490 -32.86544 -32.17120 -31.44820 -29.06980 -28.03390 -26.63794 -25.31121 -25.04988 -24.50993 -23.19966 -22.56907 -21.29260 -20.29807 -19.18129 -19.06659 -18.14784 -17.90305 -17.72340 -16.96546 -16.67410 -16.23800 -15.81307 -15.74832 -15.51747 -15.32722 -15.10970 -15.03628 -14.86591 -14.53404 -14.45526 -13.95602 -13.86444 -13.64636 -13.41734 -13.13909 -13.00582 -12.85882 -12.68130 -12.65173 -12.52763 -12.13495 -12.12745 -11.93695 -11.75185 -11.45756 -11.36269 -11.15531 -10.90786 -10.85476 -10.40814 -10.00768 -9.68976 -9.10788 -8.98616 -7.95554 -5.24134 -0.53092 -0.09115 1.03102 1.46122 1.47343 1.57507 1.66322 1.99456 2.27874 2.55497 3.16302 3.37260 3.39905 3.55144 3.58936 3.60354 3.81437 3.88542 3.93073 3.94385 4.01291 4.06953 4.14888 4.30441 4.32387 4.38951 4.47905 4.56046 4.57333 4.64582 4.75815 4.83219 4.88199 4.91619 4.92618 4.98119 5.09109 5.13957 5.15419 5.17372 5.27830 5.37815 5.47476 5.48425 5.49183 5.64407 5.69689 5.97550 6.27272 6.58402 6.99655 7.29028 7.32795 8.10760 8.33175 9.28412 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.002125 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.730225 B =13176.150544 C =14502.865565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.109 4.109 12 C -0.113 4.113 13 C 0.128 3.872 14 N -0.703 5.703 15 C 0.524 3.476 16 O -0.581 6.581 17 C -0.090 4.090 18 C -0.069 4.069 19 C -0.094 4.094 20 C -0.118 4.118 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.060 4.060 24 C -0.179 4.179 25 C 0.112 3.888 26 N -0.507 5.507 27 C 0.109 3.891 28 C -0.145 4.145 29 H 0.251 0.749 30 H 0.372 0.628 31 H 0.019 0.981 32 H 0.024 0.976 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.172 0.828 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.044 0.956 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.505 -28.924 3.252 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.127 4.127 12 C -0.151 4.151 13 C 0.022 3.978 14 N -0.354 5.354 15 C 0.312 3.688 16 O -0.460 6.460 17 C -0.129 4.129 18 C -0.070 4.070 19 C -0.114 4.114 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.085 4.085 24 C -0.198 4.198 25 C -0.060 4.060 26 N -0.215 5.215 27 C -0.012 4.012 28 C -0.184 4.184 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.155 0.845 39 H 0.126 0.874 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.189 0.811 44 H 0.185 0.815 45 H 0.187 0.813 46 H 0.063 0.937 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.611 -28.602 3.375 30.693 hybrid contribution -0.560 1.308 0.431 1.487 sum -11.171 -27.294 3.807 29.736 Atomic orbital electron populations 1.69830 1.06661 1.25982 1.59733 1.25608 0.96454 1.01236 1.03867 0.85049 0.78229 0.79665 0.76683 1.18968 1.21850 1.22124 1.19712 0.91533 0.85504 1.40866 0.90644 1.42603 1.05590 1.01332 1.89279 1.20832 0.93767 0.84547 0.97509 1.22711 0.98518 0.94428 0.97081 1.23203 0.98768 0.93268 0.99886 1.21710 0.85408 0.93972 0.96737 1.45618 1.22812 1.45269 1.21704 1.20905 0.85140 0.77803 0.84978 1.90669 1.73762 1.59787 1.21820 1.20556 0.93136 1.00224 0.98999 1.19190 0.97163 0.94799 0.95887 1.21144 0.98508 0.91662 1.00086 1.21276 0.96359 1.01357 0.94606 1.21363 0.98462 0.93310 0.98790 1.19201 1.00078 0.95772 0.97844 1.21898 0.94475 0.96616 0.95541 1.22204 1.02013 0.94344 1.01280 1.23425 0.90703 1.01902 0.89930 1.67954 1.15909 1.15127 1.22548 1.19030 0.97139 0.89103 0.95921 1.23461 1.00817 0.96607 0.97511 0.94034 0.79618 0.96349 0.95779 0.89612 0.87612 0.88605 0.89328 0.74929 0.84489 0.87385 0.83172 0.82315 0.82304 0.81102 0.81475 0.81325 0.93683 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.02 13.06 21.65 0.28 -60.73 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 7 C -0.24 -14.05 9.99 84.03 0.84 -13.21 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -39.15 5.60 -343.46 -1.92 -41.08 16 10 C 0.16 6.45 6.10 86.38 0.53 6.97 16 11 C -0.11 -3.42 3.65 -10.17 -0.04 -3.46 16 12 C -0.11 -2.58 7.38 31.12 0.23 -2.36 16 13 C 0.13 3.37 4.30 45.52 0.20 3.57 16 14 N -0.70 -16.62 5.26 -440.03 -2.32 -18.93 16 15 C 0.52 14.19 7.82 87.66 0.69 14.87 16 16 O -0.58 -20.95 15.65 -3.02 -0.05 -20.99 16 17 C -0.09 -1.85 5.56 29.10 0.16 -1.69 16 18 C -0.07 -1.61 4.38 -19.80 -0.09 -1.70 16 19 C -0.09 -1.66 9.56 22.03 0.21 -1.45 16 20 C -0.12 -1.70 9.96 22.05 0.22 -1.48 16 21 C -0.10 -1.55 9.78 22.31 0.22 -1.33 16 22 C -0.13 -2.67 5.74 -21.28 -0.12 -2.80 16 23 C -0.06 -0.95 9.90 22.50 0.22 -0.73 16 24 C -0.18 -2.94 10.03 22.15 0.22 -2.72 16 25 C 0.11 2.53 11.15 85.07 0.95 3.47 16 26 N -0.51 -14.39 9.51 -188.64 -1.79 -16.18 16 27 C 0.11 2.89 6.58 40.28 0.27 3.15 16 28 C -0.15 -4.72 7.45 31.21 0.23 -4.49 16 29 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.37 20.88 7.67 -92.71 -0.71 20.17 16 31 H 0.02 0.76 7.85 -2.39 -0.02 0.74 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.11 2.23 8.10 -2.39 -0.02 2.21 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 2.54 7.50 -2.39 -0.02 2.52 16 37 H 0.41 7.59 8.70 -92.71 -0.81 6.78 16 38 H 0.14 1.68 8.04 -2.38 -0.02 1.66 16 39 H 0.11 2.32 7.72 -2.39 -0.02 2.30 16 40 H 0.15 1.80 8.04 -2.91 -0.02 1.77 16 41 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 42 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 43 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 44 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 46 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.08 2.73 7.90 -2.39 -0.02 2.71 16 Total: -1.00 -82.68 395.29 1.11 -81.58 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.52 Total: 36.76 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 5.40 Total: -9.60 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -5.75 Total: -136.93 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -20.99 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -82.68 1.11 -81.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733951980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.698 kcal (2) G-P(sol) polarization free energy of solvation -82.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds