Wall clock time and date at job start Tue Mar 31 2020 22:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48492 * 109.47201 * 270.00191 * 3 2 1 5 5 H 1.48501 * 109.46968 * 30.00215 * 3 2 1 6 6 H 1.48497 * 109.47298 * 150.00018 * 3 2 1 7 7 C 1.38813 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99928 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99934 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99569 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47345 * 324.99824 * 10 9 7 12 12 C 1.53002 * 109.46806 * 204.99719 * 10 9 7 13 13 N 1.46496 * 109.47045 * 55.00600 * 12 10 9 14 14 C 1.34784 * 120.00155 * 180.02562 * 13 12 10 15 15 O 1.21279 * 119.99673 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00109 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47055 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47127 * 179.97438 * 17 16 14 19 19 N 1.46496 * 109.46995 * 180.02562 * 18 17 16 20 20 C 1.36373 * 125.96253 * 269.68943 * 19 18 17 21 21 O 1.35629 * 125.99200 * 0.03962 * 20 19 18 22 22 N 1.30907 * 108.02226 * 179.89037 * 20 19 18 23 23 N 1.40113 * 107.93774 * 0.37213 * 22 20 19 24 24 C 1.30901 * 107.94342 * 359.76799 * 23 22 20 25 25 O 1.35627 * 125.99257 * 179.97438 * 24 23 22 26 26 C 1.53001 * 109.47112 * 85.00113 * 10 9 7 27 27 C 1.52999 * 117.50105 * 8.74593 * 26 10 9 28 28 C 1.53001 * 117.49931 * 300.08322 * 26 10 9 29 29 H 0.96998 * 119.99527 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00682 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47600 * 294.99959 * 12 10 9 32 32 H 1.09004 * 109.47006 * 175.00180 * 12 10 9 33 33 H 0.97002 * 120.00100 * 359.97438 * 13 12 10 34 34 H 1.09001 * 109.47324 * 59.99162 * 16 14 13 35 35 H 1.09004 * 109.47043 * 299.99530 * 16 14 13 36 36 H 1.09001 * 109.46832 * 59.99966 * 17 16 14 37 37 H 1.08993 * 109.47194 * 299.99487 * 17 16 14 38 38 H 1.09001 * 109.46801 * 300.00272 * 18 17 16 39 39 H 1.09001 * 109.46998 * 59.99868 * 18 17 16 40 40 H 0.96706 * 113.99900 * 89.99640 * 21 20 19 41 41 H 0.96696 * 113.99872 * 270.02800 * 25 24 23 42 42 H 1.09007 * 115.55020 * 154.41111 * 26 10 9 43 43 H 1.09007 * 117.49403 * 359.97438 * 27 26 10 44 44 H 1.08996 * 117.50229 * 145.01791 * 27 26 10 45 45 H 1.08994 * 117.49944 * 214.97818 * 28 26 10 46 46 H 1.08998 * 117.49615 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5645 -3.2066 0.5901 12 6 5.4991 -2.2591 0.6112 13 7 5.3610 -1.6643 1.9429 14 6 6.4588 -1.3863 2.6739 15 8 7.5608 -1.6290 2.2294 16 6 6.3168 -0.7740 4.0436 17 6 7.7037 -0.5623 4.6538 18 6 7.5596 0.0600 6.0441 19 7 8.8877 0.2633 6.6281 20 6 9.5690 -0.6316 7.3993 21 8 9.1362 -1.8656 7.7591 22 7 10.7154 -0.0922 7.7287 23 7 10.7691 1.1876 7.1609 24 6 9.6558 1.3829 6.5006 25 8 9.3242 2.5025 5.8107 26 6 4.2587 -2.9752 -1.4360 27 6 3.8387 -2.0293 -2.5629 28 6 2.9756 -3.2472 -2.2237 29 1 -0.4849 0.8401 0.0004 30 1 3.8647 -0.3622 0.0014 31 1 6.0786 -1.5916 -0.0266 32 1 6.0104 -3.2182 0.6929 33 1 4.4797 -1.4699 2.2983 34 1 5.7374 -1.4414 4.6816 35 1 5.8053 0.1850 3.9615 36 1 8.2833 0.1049 4.0158 37 1 8.2148 -1.5214 4.7359 38 1 7.0486 1.0193 5.9616 39 1 6.9798 -0.6068 6.6823 40 1 9.3824 -2.5652 7.1384 41 1 8.8565 3.1650 6.3375 42 1 5.1106 -3.6300 -1.6199 43 1 3.4574 -1.0480 -2.2804 44 1 4.4138 -2.0622 -3.4882 45 1 2.9833 -4.0807 -2.9260 46 1 2.0269 -3.0674 -1.7179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752470921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:53 Heat of formation + Delta-G solvation = 13.172632 kcal Electronic energy + Delta-G solvation = -29081.761707 eV Core-core repulsion = 24817.715880 eV Total energy + Delta-G solvation = -4264.045826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63219 -39.76148 -38.56668 -37.89768 -37.47739 -36.07005 -34.69332 -33.39940 -32.75435 -31.25095 -29.94810 -29.04314 -27.29324 -23.98461 -23.14874 -23.04357 -22.42267 -21.99055 -21.55499 -20.32306 -19.37198 -19.20016 -19.04520 -17.90796 -17.24073 -17.04419 -16.45816 -16.16015 -15.86046 -15.70978 -15.28805 -14.90419 -14.52803 -14.35894 -14.11230 -13.64141 -13.43303 -13.28118 -12.99016 -12.86900 -12.77307 -12.74359 -12.39266 -12.22516 -11.66722 -11.63286 -11.34936 -11.29748 -11.07534 -10.90627 -10.88095 -10.67033 -10.40489 -10.34401 -9.91928 -9.81369 -9.67789 -9.60601 -9.30769 -9.12924 -8.89844 -7.48911 -5.93889 -3.31341 1.14121 1.34726 1.85756 2.66085 2.84550 3.18083 3.20689 3.26086 3.32903 3.46302 3.99306 4.31856 4.41559 4.44757 4.48586 4.68253 4.80977 4.84053 4.90769 5.01929 5.10826 5.20910 5.23963 5.27951 5.33946 5.58317 5.59689 5.66357 5.71786 5.76011 5.77013 5.86262 5.88275 6.18748 6.29958 6.47118 6.51808 6.62041 6.67545 6.91674 6.92333 7.05158 7.51486 7.65064 7.81734 8.24243 8.29292 9.01546 9.73542 9.92655 11.23678 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.002331 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.762420 B =12008.581280 C =12989.670576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.093 0.907 9 N -0.743 5.743 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.116 3.884 13 N -0.715 5.715 14 C 0.509 3.491 15 O -0.553 6.553 16 C -0.139 4.139 17 C -0.117 4.117 18 C 0.099 3.901 19 N -0.509 5.509 20 C 0.407 3.593 21 O -0.437 6.437 22 N -0.298 5.298 23 N -0.299 5.299 24 C 0.408 3.592 25 O -0.434 6.434 26 C -0.179 4.179 27 C -0.165 4.165 28 C -0.170 4.170 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.411 0.589 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.414 0.586 41 H 0.412 0.588 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.776 -1.695 11.511 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.386 5.386 10 C 0.088 3.912 11 H 0.084 0.916 12 C -0.009 4.009 13 N -0.367 5.367 14 C 0.295 3.705 15 O -0.432 6.432 16 C -0.180 4.180 17 C -0.156 4.156 18 C -0.024 4.024 19 N -0.229 5.229 20 C 0.097 3.903 21 O -0.237 6.237 22 N -0.142 5.142 23 N -0.143 5.143 24 C 0.098 3.902 25 O -0.233 6.233 26 C -0.201 4.201 27 C -0.203 4.203 28 C -0.207 4.207 29 H 0.071 0.929 30 H 0.196 0.804 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.273 0.727 41 H 0.270 0.730 42 H 0.107 0.893 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.714 -1.706 11.830 18.957 hybrid contribution -1.514 1.106 -0.783 2.032 sum 13.199 -0.600 11.048 17.223 Atomic orbital electron populations 1.69686 1.05090 1.25931 1.56814 1.24653 0.95118 0.97008 1.01833 0.86658 0.79019 0.85336 0.78019 1.21063 1.21813 1.20446 1.19001 0.80251 0.94587 1.43671 0.88913 1.42847 1.04143 1.01764 1.89866 1.19960 0.89602 0.89490 0.92150 0.91622 1.21640 0.98459 0.98067 0.82717 1.46039 1.09558 1.63013 1.18081 1.20444 0.84541 0.78516 0.86978 1.90696 1.25925 1.53853 1.72677 1.21547 0.98354 1.03322 0.94778 1.21647 0.97395 1.02573 0.93953 1.22064 0.80703 1.04059 0.95617 1.47156 1.18738 1.15165 1.41823 1.21329 0.88942 0.87097 0.92920 1.84927 1.77575 1.11655 1.49531 1.78367 1.12462 1.01845 1.21561 1.78370 1.15933 1.07809 1.12202 1.21340 0.88736 0.84643 0.95468 1.84997 1.78184 1.24024 1.36142 1.23005 0.98368 1.03671 0.95007 1.22848 1.03217 0.97149 0.97042 1.22904 0.96399 0.98689 1.02687 0.92931 0.80395 0.91735 0.91433 0.75319 0.88325 0.88263 0.89971 0.90651 0.88224 0.87830 0.72735 0.72985 0.89347 0.87243 0.91032 0.90808 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.68 13.97 55.49 0.78 -25.91 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 20.02 27.74 -169.99 -4.71 15.31 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -5.86 6.52 56.52 0.37 -5.49 16 7 C -0.25 -5.89 8.64 -15.06 -0.13 -6.02 16 8 H 0.09 2.44 7.14 -52.48 -0.37 2.06 16 9 N -0.74 -14.58 2.88 -53.42 -0.15 -14.74 16 10 C 0.20 3.22 2.86 -67.93 -0.19 3.03 16 11 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 12 C 0.12 1.68 5.22 -4.04 -0.02 1.66 16 13 N -0.72 -9.57 5.39 -60.29 -0.32 -9.89 16 14 C 0.51 6.55 7.83 -10.98 -0.09 6.47 16 15 O -0.55 -9.07 15.98 5.56 0.09 -8.98 16 16 C -0.14 -1.13 5.70 -27.89 -0.16 -1.29 16 17 C -0.12 -0.92 4.83 -26.73 -0.13 -1.05 16 18 C 0.10 0.57 6.01 -4.04 -0.02 0.54 16 19 N -0.51 -4.29 2.76 -120.06 -0.33 -4.62 16 20 C 0.41 3.93 9.15 -88.81 -0.81 3.12 16 21 O -0.44 -2.95 13.58 -18.59 -0.25 -3.21 16 22 N -0.30 -3.80 12.72 29.66 0.38 -3.42 16 23 N -0.30 -3.84 12.72 29.65 0.38 -3.46 16 24 C 0.41 4.03 9.15 -88.81 -0.81 3.22 16 25 O -0.43 -3.16 13.58 -18.58 -0.25 -3.41 16 26 C -0.18 -2.84 5.70 -90.62 -0.52 -3.35 16 27 C -0.17 -2.85 9.74 -26.69 -0.26 -3.11 16 28 C -0.17 -2.89 9.87 -26.69 -0.26 -3.15 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.36 7.30 5.66 -40.82 -0.23 7.07 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.41 5.38 8.14 -40.82 -0.33 5.05 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.41 0.87 9.06 45.56 0.41 1.28 16 41 H 0.41 0.69 9.06 45.56 0.41 1.10 16 42 H 0.09 1.24 8.11 -51.92 -0.42 0.81 16 43 H 0.11 2.21 6.68 -51.93 -0.35 1.86 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.11 2.17 6.22 -51.93 -0.32 1.85 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -35.15 390.05 -7.05 -42.20 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.01 Total: 14.02 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.51 Total: 0.23 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.72 Total: -62.04 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.42 Total: -15.60 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.71 Total: 15.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.15 -7.05 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752470921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.375 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds