Wall clock time and date at job start Tue Mar 31 2020 22:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48493 * 109.47264 * 240.00125 * 3 2 1 5 5 H 1.48508 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47338 * 119.99578 * 3 2 1 7 7 C 1.38813 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00352 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99615 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99841 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46796 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.49924 * 304.93192 * 11 10 9 13 13 C 1.53042 * 109.52019 * 184.85188 * 11 10 9 14 14 C 1.53043 * 109.53811 * 178.66517 * 13 11 10 15 15 C 1.52756 * 109.38210 * 61.23890 * 14 13 11 16 16 N 1.46925 * 109.01111 * 305.58912 * 15 14 13 17 17 C 1.34777 * 120.63369 * 233.57902 * 16 15 14 18 18 O 1.21598 * 119.99991 * 183.92910 * 17 16 15 19 19 C 1.47454 * 119.99950 * 3.93821 * 17 16 15 20 20 C 1.38862 * 120.45368 * 305.39779 * 19 17 16 21 21 C 1.38907 * 120.67389 * 179.97438 * 20 19 17 22 22 C 1.36373 * 121.26965 * 359.97438 * 21 20 19 23 23 C 1.40401 * 119.98482 * 359.74819 * 22 21 20 24 24 C 1.40473 * 121.94698 * 179.73247 * 23 22 21 25 25 N 1.31278 * 119.87703 * 180.28489 * 24 23 22 26 26 C 1.32553 * 122.74056 * 0.25169 * 25 24 23 27 27 C 1.36337 * 121.81347 * 359.97438 * 26 25 24 28 28 C 1.40292 * 118.70434 * 0.02562 * 27 26 25 29 29 C 1.46929 * 118.73649 * 53.31169 * 16 15 14 30 30 H 0.97003 * 120.00012 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99913 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47266 * 60.00063 * 10 9 7 33 33 H 1.08996 * 109.47281 * 299.99764 * 10 9 7 34 34 H 1.08990 * 109.46399 * 298.68630 * 13 11 10 35 35 H 1.09001 * 109.46173 * 58.65980 * 13 11 10 36 36 H 1.08997 * 109.50131 * 181.31849 * 14 13 11 37 37 H 1.09009 * 109.49813 * 301.38229 * 14 13 11 38 38 H 1.09006 * 109.50997 * 185.70695 * 15 14 13 39 39 H 1.09000 * 109.43348 * 65.42741 * 15 14 13 40 40 H 1.07998 * 119.66847 * 359.97438 * 20 19 17 41 41 H 1.07999 * 119.36442 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00725 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.05787 * 0.55440 * 24 23 22 44 44 H 1.07991 * 119.09363 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.64313 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.58994 * 66.42906 * 29 16 15 47 47 H 1.08999 * 109.58893 * 186.71292 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0027 11 6 1.0639 -4.8197 0.0031 12 1 0.3799 -4.7133 0.8451 13 6 1.8239 -6.1423 0.1263 14 6 0.8279 -7.3037 0.1602 15 6 0.0287 -7.3244 -1.1414 16 7 -0.5876 -6.0063 -1.3456 17 6 -1.9134 -5.8939 -1.5597 18 8 -2.4006 -4.8056 -1.7982 19 6 -2.7733 -7.0905 -1.5046 20 6 -2.4877 -8.1992 -2.2904 21 6 -3.2942 -9.3290 -2.2417 22 6 -4.3852 -9.3853 -1.4253 23 6 -4.7081 -8.2895 -0.6091 24 6 -5.8248 -8.3009 0.2429 25 7 -6.0921 -7.2513 0.9847 26 6 -5.3490 -6.1538 0.9682 27 6 -4.2478 -6.0433 0.1721 28 6 -3.8990 -7.1257 -0.6495 29 6 0.2682 -4.8126 -1.3059 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 0.0023 32 1 2.6848 -3.7137 0.8927 33 1 2.6848 -3.7153 -0.8872 34 1 2.4895 -6.2596 -0.7287 35 1 2.4102 -6.1400 1.0452 36 1 1.3686 -8.2436 0.2715 37 1 0.1465 -7.1743 1.0012 38 1 -0.7490 -8.0856 -1.0790 39 1 0.6963 -7.5484 -1.9734 40 1 -1.6297 -8.1829 -2.9462 41 1 -3.0528 -10.1793 -2.8623 42 1 -4.9980 -10.2743 -1.4033 43 1 -6.4598 -9.1731 0.2908 44 1 -5.6235 -5.3242 1.6029 45 1 -3.6560 -5.1399 0.1734 46 1 0.9558 -4.8277 -2.1516 47 1 -0.3512 -3.9171 -1.3546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752813152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:57 Heat of formation + Delta-G solvation = 32.496170 kcal Electronic energy + Delta-G solvation = -29258.729890 eV Core-core repulsion = 25406.371258 eV Total energy + Delta-G solvation = -3852.358632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35280 -39.93006 -37.77944 -37.30084 -34.95887 -33.31477 -32.86725 -31.75147 -31.47973 -30.21776 -29.54507 -25.99161 -25.57355 -24.52287 -23.81242 -23.14607 -23.02934 -21.40445 -20.25084 -19.26904 -18.45210 -17.57461 -17.02795 -16.94322 -16.57680 -15.93446 -15.23560 -14.94280 -14.87026 -14.67310 -14.49053 -14.34876 -13.98637 -13.93907 -13.58285 -13.51249 -13.09679 -12.95339 -12.81600 -12.65654 -12.44085 -12.30172 -12.18921 -11.67590 -11.48874 -11.11223 -11.02725 -10.82975 -10.67692 -10.47905 -10.42355 -10.31140 -10.02470 -9.85950 -9.65136 -9.59283 -9.35424 -8.84845 -8.58713 -8.31148 -6.88766 -5.70929 -3.00870 -0.06714 0.59311 1.49988 2.50829 2.74664 3.04126 3.46983 3.50971 3.52682 3.81437 4.11463 4.22815 4.36703 4.41640 4.56347 4.59420 4.64897 4.72111 4.77319 4.86926 4.93836 5.09890 5.16687 5.24015 5.29488 5.39716 5.43524 5.56380 5.60462 5.62241 5.65049 5.70213 5.77412 5.81328 5.90857 5.92982 6.07159 6.08379 6.09919 6.18293 6.32103 6.36593 6.47380 6.51385 6.59251 6.75483 6.86136 7.38637 7.72975 7.75356 8.13714 8.46721 9.57702 10.15152 10.49370 11.51283 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.002963 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.100088 B = 9448.943516 C =10674.334170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.098 3.902 16 N -0.601 5.601 17 C 0.555 3.445 18 O -0.517 6.517 19 C -0.109 4.109 20 C -0.069 4.069 21 C -0.126 4.126 22 C -0.069 4.069 23 C -0.116 4.116 24 C 0.141 3.859 25 N -0.485 5.485 26 C 0.080 3.920 27 C -0.142 4.142 28 C 0.008 3.992 29 C 0.120 3.880 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.068 0.932 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 -26.291 -2.717 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.092 0.908 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.025 4.025 16 N -0.334 5.334 17 C 0.342 3.658 18 O -0.393 6.393 19 C -0.112 4.112 20 C -0.089 4.089 21 C -0.144 4.144 22 C -0.089 4.089 23 C -0.118 4.118 24 C -0.031 4.031 25 N -0.193 5.193 26 C -0.063 4.063 27 C -0.162 4.162 28 C 0.002 3.998 29 C -0.001 4.001 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.182 0.818 44 H 0.175 0.825 45 H 0.165 0.835 46 H 0.087 0.913 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.013 -25.403 -2.245 26.449 hybrid contribution 1.037 0.968 -0.582 1.533 sum -5.976 -24.435 -2.827 25.314 Atomic orbital electron populations 1.69658 1.05059 1.25781 1.57268 1.24754 0.95496 0.97668 1.02918 0.86284 0.78514 0.83674 0.77776 1.21290 1.21687 1.21326 1.19152 0.90934 0.84172 1.43208 0.91285 1.42401 1.05909 0.99934 1.89528 1.20627 0.92928 0.85118 0.98037 1.21694 0.98009 0.95241 0.97724 0.90805 1.21526 0.97456 0.93664 1.02401 1.21836 0.98589 0.99253 0.97510 1.21894 0.97632 0.84798 0.98186 1.48125 1.06628 1.08405 1.70260 1.18124 0.81880 0.88253 0.77535 1.90894 1.73566 1.27495 1.47381 1.19938 0.96424 0.95109 0.99708 1.21453 0.98904 0.91547 0.96949 1.20822 0.95394 0.98299 0.99853 1.21120 0.96598 0.97175 0.94026 1.18982 0.97742 0.94832 1.00228 1.23210 0.93122 0.96481 0.90255 1.67436 1.30323 1.00355 1.21142 1.22298 0.91370 0.95442 0.97176 1.22144 0.98900 0.99200 0.95916 1.17859 0.93284 0.93695 0.94970 1.21789 0.93269 0.87659 0.97381 0.93415 0.78124 0.96029 0.96227 0.91682 0.91434 0.90789 0.91580 0.89587 0.91116 0.84783 0.84841 0.84543 0.81838 0.82503 0.83529 0.91340 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.06 55.49 0.72 -28.20 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.85 5.38 -59.91 -0.32 -19.17 16 10 C 0.16 3.20 5.66 -4.04 -0.02 3.18 16 11 C -0.11 -1.72 2.37 -90.50 -0.21 -1.93 16 12 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.11 -1.33 5.17 -26.69 -0.14 -1.47 16 14 C -0.13 -1.31 6.06 -26.83 -0.16 -1.47 16 15 C 0.10 0.96 5.52 -3.94 -0.02 0.94 16 16 N -0.60 -8.36 2.98 -174.29 -0.52 -8.88 16 17 C 0.56 8.70 6.51 -12.51 -0.08 8.62 16 18 O -0.52 -10.45 15.27 5.28 0.08 -10.37 16 19 C -0.11 -1.37 4.89 -104.70 -0.51 -1.88 16 20 C -0.07 -0.62 7.43 -39.10 -0.29 -0.91 16 21 C -0.13 -0.85 9.92 -40.01 -0.40 -1.25 16 22 C -0.07 -0.49 9.79 -39.44 -0.39 -0.88 16 23 C -0.12 -1.18 5.74 -106.88 -0.61 -1.79 16 24 C 0.14 1.37 11.05 -16.95 -0.19 1.19 16 25 N -0.48 -5.92 10.30 -13.11 -0.14 -6.05 16 26 C 0.08 1.01 11.07 -17.93 -0.20 0.81 16 27 C -0.14 -1.98 9.30 -39.49 -0.37 -2.35 16 28 C 0.01 0.10 5.77 -106.56 -0.61 -0.52 16 29 C 0.12 1.99 5.51 -3.71 -0.02 1.97 16 30 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 31 H 0.38 10.57 6.90 -40.82 -0.28 10.29 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.09 0.73 4.77 -51.93 -0.25 0.48 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.13 0.97 7.40 -52.49 -0.39 0.58 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.15 2.30 6.60 -52.49 -0.35 1.95 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.10 2.18 6.23 -51.93 -0.32 1.85 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -35.39 378.64 -10.59 -45.98 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.63 Total: 8.43 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -4.47 Total: -5.27 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.25 Total: -62.31 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.39 -10.59 -45.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752813152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.478 kcal (2) G-P(sol) polarization free energy of solvation -35.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds