Wall clock time and date at job start Tue Mar 31 2020 22:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48493 * 109.47264 * 240.00125 * 3 2 1 5 5 H 1.48508 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47338 * 119.99578 * 3 2 1 7 7 C 1.38813 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00352 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99615 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99841 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46796 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.49924 * 304.93192 * 11 10 9 13 13 C 1.53042 * 109.52019 * 184.85188 * 11 10 9 14 14 C 1.53043 * 109.53811 * 178.66517 * 13 11 10 15 15 C 1.52756 * 109.38210 * 61.23890 * 14 13 11 16 16 N 1.46925 * 109.01111 * 305.58912 * 15 14 13 17 17 C 1.34777 * 120.63369 * 233.57902 * 16 15 14 18 18 O 1.21598 * 119.99991 * 183.92910 * 17 16 15 19 19 C 1.47454 * 119.99950 * 3.93821 * 17 16 15 20 20 C 1.38862 * 120.45368 * 305.39779 * 19 17 16 21 21 C 1.38907 * 120.67389 * 179.97438 * 20 19 17 22 22 C 1.36373 * 121.26965 * 359.97438 * 21 20 19 23 23 C 1.40401 * 119.98482 * 359.74819 * 22 21 20 24 24 C 1.40473 * 121.94698 * 179.73247 * 23 22 21 25 25 N 1.31278 * 119.87703 * 180.28489 * 24 23 22 26 26 C 1.32553 * 122.74056 * 0.25169 * 25 24 23 27 27 C 1.36337 * 121.81347 * 359.97438 * 26 25 24 28 28 C 1.40292 * 118.70434 * 0.02562 * 27 26 25 29 29 C 1.46929 * 118.73649 * 53.31169 * 16 15 14 30 30 H 0.97003 * 120.00012 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99913 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47266 * 60.00063 * 10 9 7 33 33 H 1.08996 * 109.47281 * 299.99764 * 10 9 7 34 34 H 1.08990 * 109.46399 * 298.68630 * 13 11 10 35 35 H 1.09001 * 109.46173 * 58.65980 * 13 11 10 36 36 H 1.08997 * 109.50131 * 181.31849 * 14 13 11 37 37 H 1.09009 * 109.49813 * 301.38229 * 14 13 11 38 38 H 1.09006 * 109.50997 * 185.70695 * 15 14 13 39 39 H 1.09000 * 109.43348 * 65.42741 * 15 14 13 40 40 H 1.07998 * 119.66847 * 359.97438 * 20 19 17 41 41 H 1.07999 * 119.36442 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00725 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.05787 * 0.55440 * 24 23 22 44 44 H 1.07991 * 119.09363 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.64313 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.58994 * 66.42906 * 29 16 15 47 47 H 1.08999 * 109.58893 * 186.71292 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0027 11 6 1.0639 -4.8197 0.0031 12 1 0.3799 -4.7133 0.8451 13 6 1.8239 -6.1423 0.1263 14 6 0.8279 -7.3037 0.1602 15 6 0.0287 -7.3244 -1.1414 16 7 -0.5876 -6.0063 -1.3456 17 6 -1.9134 -5.8939 -1.5597 18 8 -2.4006 -4.8056 -1.7982 19 6 -2.7733 -7.0905 -1.5046 20 6 -2.4877 -8.1992 -2.2904 21 6 -3.2942 -9.3290 -2.2417 22 6 -4.3852 -9.3853 -1.4253 23 6 -4.7081 -8.2895 -0.6091 24 6 -5.8248 -8.3009 0.2429 25 7 -6.0921 -7.2513 0.9847 26 6 -5.3490 -6.1538 0.9682 27 6 -4.2478 -6.0433 0.1721 28 6 -3.8990 -7.1257 -0.6495 29 6 0.2682 -4.8126 -1.3059 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 0.0023 32 1 2.6848 -3.7137 0.8927 33 1 2.6848 -3.7153 -0.8872 34 1 2.4895 -6.2596 -0.7287 35 1 2.4102 -6.1400 1.0452 36 1 1.3686 -8.2436 0.2715 37 1 0.1465 -7.1743 1.0012 38 1 -0.7490 -8.0856 -1.0790 39 1 0.6963 -7.5484 -1.9734 40 1 -1.6297 -8.1829 -2.9462 41 1 -3.0528 -10.1793 -2.8623 42 1 -4.9980 -10.2743 -1.4033 43 1 -6.4598 -9.1731 0.2908 44 1 -5.6235 -5.3242 1.6029 45 1 -3.6560 -5.1399 0.1734 46 1 0.9558 -4.8277 -2.1516 47 1 -0.3512 -3.9171 -1.3546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752813152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:56 Heat of formation + Delta-G solvation = 8.792962 kcal Electronic energy + Delta-G solvation = -29259.757738 eV Core-core repulsion = 25406.371258 eV Total energy + Delta-G solvation = -3853.386480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24179 -40.98761 -38.95393 -38.18545 -36.65346 -34.62152 -33.95007 -33.15694 -32.35086 -31.53938 -30.73636 -27.38255 -26.92076 -25.35943 -24.96644 -24.51596 -23.98166 -22.70470 -21.50991 -20.30954 -19.32636 -19.10150 -18.42152 -17.81100 -17.62551 -16.99096 -16.73587 -16.21203 -15.98732 -15.82057 -15.45203 -15.33319 -15.27966 -15.22619 -14.83888 -14.72211 -14.27649 -14.16495 -14.04362 -13.79161 -13.62975 -13.19937 -13.06049 -12.96895 -12.81221 -12.64599 -12.53363 -12.23920 -12.11036 -11.96549 -11.88173 -11.61717 -11.37341 -11.29949 -10.98748 -10.95158 -10.56203 -10.10540 -9.75848 -9.13050 -9.04647 -7.97074 -5.28094 -0.83468 -0.18203 0.63903 1.42752 1.47097 1.47745 1.53669 1.83767 2.06702 2.53141 2.99412 3.26277 3.35674 3.42618 3.60044 3.67538 3.73970 3.79329 3.84556 3.87676 3.89489 4.05059 4.14544 4.18213 4.25707 4.33549 4.40350 4.51376 4.55933 4.69713 4.70284 4.72865 4.75362 4.83972 4.86107 4.87233 4.99817 5.04651 5.08748 5.18100 5.26234 5.29550 5.32975 5.42664 5.44205 5.47598 5.57469 5.77427 6.22824 6.28596 6.89921 6.99188 7.28294 8.04615 8.26733 9.26200 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.002963 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.100088 B = 9448.943516 C =10674.334170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.159 3.841 11 C -0.094 4.094 12 H 0.045 0.955 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.092 3.908 16 N -0.598 5.598 17 C 0.549 3.451 18 O -0.585 6.585 19 C -0.149 4.149 20 C -0.045 4.045 21 C -0.121 4.121 22 C -0.045 4.045 23 C -0.130 4.130 24 C 0.159 3.841 25 N -0.512 5.512 26 C 0.077 3.923 27 C -0.180 4.180 28 C -0.009 4.009 29 C 0.128 3.872 30 H 0.250 0.750 31 H 0.369 0.631 32 H 0.027 0.973 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.155 0.845 41 H 0.181 0.819 42 H 0.186 0.814 43 H 0.212 0.788 44 H 0.158 0.842 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 -31.841 -3.906 32.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.032 3.968 11 C -0.114 4.114 12 H 0.064 0.936 13 C -0.143 4.143 14 C -0.166 4.166 15 C -0.028 4.028 16 N -0.329 5.329 17 C 0.339 3.661 18 O -0.466 6.466 19 C -0.152 4.152 20 C -0.065 4.065 21 C -0.138 4.138 22 C -0.064 4.064 23 C -0.132 4.132 24 C -0.013 4.013 25 N -0.221 5.221 26 C -0.065 4.065 27 C -0.200 4.200 28 C -0.015 4.015 29 C 0.005 3.995 30 H 0.059 0.941 31 H 0.201 0.799 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.173 0.827 41 H 0.198 0.802 42 H 0.203 0.797 43 H 0.229 0.771 44 H 0.175 0.825 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.738 -31.024 -3.419 31.735 hybrid contribution 0.670 2.500 -0.262 2.602 sum -5.068 -28.523 -3.680 29.203 Atomic orbital electron populations 1.69869 1.06961 1.26119 1.59404 1.25694 0.96349 1.01561 1.03639 0.85140 0.77090 0.78696 0.78400 1.20044 1.22391 1.20010 1.19653 0.91616 0.85278 1.41389 0.90133 1.42685 1.05484 1.01553 1.89476 1.20843 0.93536 0.84116 0.98304 1.21546 0.97005 0.96635 0.96226 0.93631 1.21513 0.97709 0.91405 1.03684 1.21840 0.97944 0.99994 0.96776 1.22284 0.98533 0.82661 0.99364 1.48204 1.06124 1.09221 1.69351 1.18810 0.82496 0.88681 0.76150 1.90843 1.74796 1.30432 1.50507 1.19682 0.97124 0.95339 1.03099 1.21841 0.99314 0.90611 0.94722 1.21332 0.94326 0.98403 0.99768 1.21702 0.96402 0.96985 0.91319 1.19294 0.97554 0.94898 1.01416 1.24054 0.92709 0.96603 0.87946 1.67515 1.30686 1.00921 1.22951 1.22314 0.91073 0.96231 0.96870 1.21904 1.00078 0.99174 0.98867 1.18068 0.94094 0.94383 0.94911 1.21433 0.92777 0.87240 0.98033 0.94147 0.79935 0.95462 0.95200 0.89729 0.90604 0.86634 0.93293 0.87617 0.88151 0.82720 0.80183 0.79672 0.77140 0.82451 0.87545 0.90414 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.20 13.06 21.65 0.28 -63.92 16 2 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 3 Si 0.98 48.37 29.55 68.60 2.03 50.40 16 4 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 9 N -0.75 -40.86 5.38 -343.46 -1.85 -42.70 16 10 C 0.16 6.51 5.66 86.38 0.49 7.00 16 11 C -0.09 -3.18 2.37 -10.71 -0.03 -3.20 16 12 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 13 C -0.11 -2.30 5.17 30.62 0.16 -2.15 16 14 C -0.13 -2.15 6.06 30.53 0.19 -1.97 16 15 C 0.09 1.59 5.52 86.22 0.48 2.06 16 16 N -0.60 -17.40 2.98 -823.58 -2.45 -19.86 16 17 C 0.55 18.87 6.51 86.67 0.56 19.43 16 18 O -0.59 -27.12 15.27 -4.03 -0.06 -27.18 16 19 C -0.15 -3.82 4.89 -19.92 -0.10 -3.91 16 20 C -0.05 -0.66 7.43 22.58 0.17 -0.49 16 21 C -0.12 -0.92 9.92 21.99 0.22 -0.70 16 22 C -0.04 -0.37 9.79 22.36 0.22 -0.16 16 23 C -0.13 -2.32 5.74 -21.33 -0.12 -2.45 16 24 C 0.16 2.69 11.05 85.32 0.94 3.63 16 25 N -0.51 -12.59 10.30 -195.40 -2.01 -14.60 16 26 C 0.08 2.17 11.07 84.14 0.93 3.11 16 27 C -0.18 -5.79 9.30 22.33 0.21 -5.58 16 28 C -0.01 -0.24 5.77 -21.12 -0.12 -0.36 16 29 C 0.13 4.58 5.51 86.36 0.48 5.05 16 30 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 31 H 0.37 22.21 6.90 -92.71 -0.64 21.57 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.11 1.43 4.77 -2.38 -0.01 1.42 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.16 1.58 7.40 -2.91 -0.02 1.56 16 41 H 0.18 -0.15 8.06 -2.91 -0.02 -0.17 16 42 H 0.19 -0.17 8.06 -2.91 -0.02 -0.19 16 43 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.16 4.06 8.06 -2.92 -0.02 4.04 16 45 H 0.11 4.15 6.60 -2.91 -0.02 4.13 16 46 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.05 2.30 6.23 -2.39 -0.01 2.28 16 Total: -1.00 -88.95 378.64 2.26 -86.69 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.35 Total: 30.01 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.97 Total: 1.16 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -6.03 Total: -141.08 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.06 Total: -27.18 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Total: -88.95 2.26 -86.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752813152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.478 kcal (2) G-P(sol) polarization free energy of solvation -88.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds