Wall clock time and date at job start Tue Mar 31 2020 22:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99614 * 2 1 4 4 H 1.48498 * 109.47497 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46890 * 120.00512 * 3 2 1 6 6 H 1.48501 * 109.47327 * 240.00121 * 3 2 1 7 7 C 1.38810 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99494 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00297 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00177 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47034 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49360 * 55.07307 * 11 10 9 13 13 C 1.53045 * 109.49560 * 175.16138 * 11 10 9 14 14 C 1.53042 * 109.53774 * 181.32221 * 13 11 10 15 15 C 1.53187 * 109.31110 * 298.63504 * 14 13 11 16 16 N 1.46928 * 108.77697 * 54.63700 * 15 14 13 17 17 C 1.34776 * 120.63225 * 126.41341 * 16 15 14 18 18 O 1.21609 * 119.99973 * 175.76796 * 17 16 15 19 19 C 1.47449 * 120.00152 * 355.76671 * 17 16 15 20 20 C 1.38860 * 120.45976 * 54.75414 * 19 17 16 21 21 C 1.38901 * 120.67434 * 179.76925 * 20 19 17 22 22 C 1.36372 * 121.26926 * 0.52065 * 21 20 19 23 23 C 1.40395 * 119.99309 * 359.74264 * 22 21 20 24 24 C 1.40463 * 121.96175 * 180.02562 * 23 22 21 25 25 N 1.31281 * 119.88286 * 179.97438 * 24 23 22 26 26 C 1.32552 * 122.73448 * 0.02562 * 25 24 23 27 27 C 1.36328 * 121.81793 * 359.97438 * 26 25 24 28 28 C 1.40292 * 118.70381 * 0.02562 * 27 26 25 29 29 C 1.46926 * 118.73714 * 306.39066 * 16 15 14 30 30 H 0.97002 * 119.99648 * 179.97438 * 1 2 3 31 31 H 0.97007 * 119.99893 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47362 * 300.00239 * 10 9 7 33 33 H 1.09004 * 109.47183 * 60.00324 * 10 9 7 34 34 H 1.09000 * 109.45921 * 301.33984 * 13 11 10 35 35 H 1.08996 * 109.45886 * 61.30001 * 13 11 10 36 36 H 1.08994 * 109.49868 * 178.68798 * 14 13 11 37 37 H 1.09000 * 109.52253 * 58.60342 * 14 13 11 38 38 H 1.09008 * 109.59011 * 294.84817 * 15 14 13 39 39 H 1.09005 * 109.70915 * 174.49183 * 15 14 13 40 40 H 1.07999 * 119.66097 * 0.03081 * 20 19 17 41 41 H 1.07997 * 119.36348 * 180.28552 * 21 20 19 42 42 H 1.08006 * 120.00366 * 179.76791 * 22 21 20 43 43 H 1.08000 * 120.05633 * 359.95760 * 24 23 22 44 44 H 1.08004 * 119.08894 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.64699 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.58723 * 293.82200 * 29 16 15 47 47 H 1.09001 * 109.58618 * 173.39704 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3796 -4.7137 -0.8424 13 6 1.8247 -6.1420 -0.1236 14 6 0.8292 -7.3040 -0.1560 15 6 0.0319 -7.3246 1.1518 16 7 -0.5858 -6.0062 1.3500 17 6 -1.9114 -5.8944 1.5659 18 8 -2.3989 -4.8062 1.8048 19 6 -2.7707 -7.0914 1.5123 20 6 -2.4854 -8.1985 2.3004 21 6 -3.2946 -9.3267 2.2570 22 6 -4.3821 -9.3866 1.4364 23 6 -4.7050 -8.2924 0.6181 24 6 -5.8154 -8.3093 -0.2419 25 7 -6.0800 -7.2628 -0.9891 26 6 -5.3366 -6.1654 -0.9747 27 6 -4.2387 -6.0515 -0.1746 28 6 -3.8930 -7.1304 0.6528 29 6 0.2693 -4.8121 1.3088 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3557 -2.3880 0.0002 32 1 2.6843 -3.7140 -0.8921 33 1 2.6856 -3.7148 0.8879 34 1 2.4104 -6.1399 -1.0429 35 1 2.4910 -6.2584 0.7310 36 1 1.3703 -8.2436 -0.2670 37 1 0.1468 -7.1757 -0.9962 38 1 0.7008 -7.5435 1.9843 39 1 -0.7449 -8.0873 1.0969 40 1 -1.6280 -8.1806 2.9569 41 1 -3.0557 -10.1741 2.8825 42 1 -4.9951 -10.2756 1.4162 43 1 -6.4503 -9.1818 -0.2886 44 1 -5.6082 -5.3388 -1.6145 45 1 -3.6462 -5.1485 -0.1783 46 1 0.9576 -4.8262 2.1539 47 1 -0.3508 -3.9169 1.3548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752813153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:02 Heat of formation + Delta-G solvation = 32.587869 kcal Electronic energy + Delta-G solvation = -29313.391512 eV Core-core repulsion = 25461.036857 eV Total energy + Delta-G solvation = -3852.354655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40355 -39.99615 -37.84986 -37.35622 -35.16897 -33.42471 -32.99334 -31.82532 -31.52677 -30.22544 -29.41787 -26.04756 -25.38554 -24.57048 -23.83736 -23.13387 -23.09465 -21.58452 -20.33708 -19.34327 -18.49936 -17.61913 -17.20181 -16.99302 -16.68374 -16.00507 -15.30132 -15.08537 -14.93302 -14.64489 -14.52447 -14.39493 -14.11103 -13.97265 -13.78490 -13.52310 -13.27144 -13.07214 -12.87904 -12.68108 -12.55884 -12.38512 -12.23623 -11.73190 -11.63416 -11.19906 -10.86620 -10.72378 -10.66949 -10.52685 -10.49461 -10.27270 -9.95316 -9.91396 -9.69227 -9.40153 -9.12118 -8.86322 -8.66415 -8.35792 -6.96874 -6.05098 -3.05576 -0.11137 0.55158 1.45435 2.45046 2.68534 2.96813 3.54093 3.58176 3.75974 3.77094 4.06231 4.18644 4.32058 4.37359 4.52014 4.57456 4.63102 4.71924 4.72870 4.80447 4.87166 5.04488 5.08782 5.18605 5.21908 5.33693 5.38136 5.51203 5.51896 5.60136 5.64863 5.66116 5.69954 5.73504 5.83429 5.87469 5.95341 6.00055 6.03585 6.04824 6.27167 6.27870 6.37469 6.43173 6.49879 6.66522 6.76634 7.30405 7.71382 7.83882 8.05766 8.80525 9.27249 10.13573 10.28158 11.43086 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.002968 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.944842 B = 9432.766061 C =10642.590978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.335 4.335 8 H 0.064 0.936 9 N -0.744 5.744 10 C 0.167 3.833 11 C -0.108 4.108 12 H 0.072 0.928 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.097 3.903 16 N -0.602 5.602 17 C 0.556 3.444 18 O -0.519 6.519 19 C -0.110 4.110 20 C -0.068 4.068 21 C -0.126 4.126 22 C -0.068 4.068 23 C -0.116 4.116 24 C 0.142 3.858 25 N -0.485 5.485 26 C 0.081 3.919 27 C -0.143 4.143 28 C 0.008 3.992 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.367 0.633 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.146 0.854 46 H 0.069 0.931 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 -26.511 2.739 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.466 4.466 8 H 0.082 0.918 9 N -0.390 5.390 10 C 0.039 3.961 11 C -0.128 4.128 12 H 0.091 0.909 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.025 4.025 16 N -0.334 5.334 17 C 0.343 3.657 18 O -0.395 6.395 19 C -0.113 4.113 20 C -0.088 4.088 21 C -0.144 4.144 22 C -0.088 4.088 23 C -0.118 4.118 24 C -0.030 4.030 25 N -0.192 5.192 26 C -0.062 4.062 27 C -0.163 4.163 28 C 0.002 3.998 29 C 0.000 4.000 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.182 0.818 44 H 0.175 0.825 45 H 0.163 0.837 46 H 0.088 0.912 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.612 -24.087 2.260 25.080 hybrid contribution 0.832 -1.693 0.597 1.979 sum -5.780 -25.780 2.857 26.574 Atomic orbital electron populations 1.70869 1.06003 1.28553 1.53194 1.25783 0.97073 1.00996 1.00412 0.83243 0.74193 0.75663 0.75779 1.21015 1.22298 1.22319 1.19996 0.91948 0.85827 1.48814 0.91831 1.42411 1.04910 1.00938 1.90766 1.20563 0.92812 0.84595 0.98167 1.21717 0.98027 0.95442 0.97620 0.90922 1.21520 0.97467 0.93546 1.02478 1.21904 0.98566 0.99238 0.97417 1.22000 0.97655 0.84708 0.98185 1.48123 1.06632 1.08377 1.70309 1.18142 0.81857 0.88301 0.77418 1.90890 1.73590 1.27587 1.47473 1.19913 0.96508 0.95061 0.99798 1.21452 0.98866 0.91546 0.96924 1.20823 0.95415 0.98320 0.99814 1.21128 0.96581 0.97157 0.93953 1.18980 0.97754 0.94849 1.00202 1.23221 0.93147 0.96498 0.90105 1.67444 1.30095 1.00374 1.21312 1.22300 0.91329 0.95433 0.97131 1.22119 0.98994 0.99163 0.96008 1.17856 0.93252 0.93752 0.94920 1.21760 0.93215 0.87574 0.97469 0.93286 0.79893 0.95927 0.96129 0.91380 0.91619 0.90712 0.91554 0.91044 0.89480 0.84786 0.84791 0.84487 0.81783 0.82492 0.83664 0.91240 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.13 13.70 55.49 0.76 -29.37 16 2 C -0.04 -1.34 5.50 -17.43 -0.10 -1.43 16 3 Si 1.08 26.60 29.92 -169.99 -5.09 21.51 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.33 -9.71 9.99 -15.06 -0.15 -9.86 16 8 H 0.06 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.74 -19.23 5.37 -59.91 -0.32 -19.55 16 10 C 0.17 3.36 5.65 -4.04 -0.02 3.34 16 11 C -0.11 -1.74 2.38 -90.50 -0.21 -1.95 16 12 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.33 5.17 -26.69 -0.14 -1.47 16 14 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 15 C 0.10 0.95 5.56 -3.71 -0.02 0.93 16 16 N -0.60 -8.29 2.97 -174.02 -0.52 -8.81 16 17 C 0.56 8.62 6.49 -12.51 -0.08 8.54 16 18 O -0.52 -10.37 15.30 5.27 0.08 -10.29 16 19 C -0.11 -1.36 4.89 -104.71 -0.51 -1.88 16 20 C -0.07 -0.60 7.42 -39.11 -0.29 -0.89 16 21 C -0.13 -0.84 9.92 -40.01 -0.40 -1.24 16 22 C -0.07 -0.47 9.78 -39.44 -0.39 -0.86 16 23 C -0.12 -1.16 5.74 -106.88 -0.61 -1.78 16 24 C 0.14 1.36 11.05 -16.95 -0.19 1.18 16 25 N -0.48 -5.86 10.30 -13.11 -0.14 -5.99 16 26 C 0.08 1.01 11.07 -17.93 -0.20 0.81 16 27 C -0.14 -1.98 9.30 -39.50 -0.37 -2.34 16 28 C 0.01 0.10 5.77 -106.55 -0.61 -0.51 16 29 C 0.12 1.99 5.51 -3.71 -0.02 1.97 16 30 H 0.26 8.17 6.77 -40.82 -0.28 7.89 16 31 H 0.37 9.87 5.73 -40.82 -0.23 9.64 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.09 0.73 4.75 -51.93 -0.25 0.48 16 40 H 0.13 0.96 7.39 -52.49 -0.39 0.57 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.15 2.25 6.62 -52.49 -0.35 1.90 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.10 2.06 6.23 -51.93 -0.32 1.73 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -36.62 376.99 -10.53 -47.15 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.52 Total: 8.56 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -4.47 Total: -8.89 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.21 Total: -63.72 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -5.09 Total: 21.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.62 -10.53 -47.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752813153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.737 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds