Wall clock time and date at job start Tue Mar 31 2020 22:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99614 * 2 1 4 4 H 1.48498 * 109.47497 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46890 * 120.00512 * 3 2 1 6 6 H 1.48501 * 109.47327 * 240.00121 * 3 2 1 7 7 C 1.38810 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99494 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00297 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00177 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47034 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49360 * 55.07307 * 11 10 9 13 13 C 1.53045 * 109.49560 * 175.16138 * 11 10 9 14 14 C 1.53042 * 109.53774 * 181.32221 * 13 11 10 15 15 C 1.53187 * 109.31110 * 298.63504 * 14 13 11 16 16 N 1.46928 * 108.77697 * 54.63700 * 15 14 13 17 17 C 1.34776 * 120.63225 * 126.41341 * 16 15 14 18 18 O 1.21609 * 119.99973 * 175.76796 * 17 16 15 19 19 C 1.47449 * 120.00152 * 355.76671 * 17 16 15 20 20 C 1.38860 * 120.45976 * 54.75414 * 19 17 16 21 21 C 1.38901 * 120.67434 * 179.76925 * 20 19 17 22 22 C 1.36372 * 121.26926 * 0.52065 * 21 20 19 23 23 C 1.40395 * 119.99309 * 359.74264 * 22 21 20 24 24 C 1.40463 * 121.96175 * 180.02562 * 23 22 21 25 25 N 1.31281 * 119.88286 * 179.97438 * 24 23 22 26 26 C 1.32552 * 122.73448 * 0.02562 * 25 24 23 27 27 C 1.36328 * 121.81793 * 359.97438 * 26 25 24 28 28 C 1.40292 * 118.70381 * 0.02562 * 27 26 25 29 29 C 1.46926 * 118.73714 * 306.39066 * 16 15 14 30 30 H 0.97002 * 119.99648 * 179.97438 * 1 2 3 31 31 H 0.97007 * 119.99893 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47362 * 300.00239 * 10 9 7 33 33 H 1.09004 * 109.47183 * 60.00324 * 10 9 7 34 34 H 1.09000 * 109.45921 * 301.33984 * 13 11 10 35 35 H 1.08996 * 109.45886 * 61.30001 * 13 11 10 36 36 H 1.08994 * 109.49868 * 178.68798 * 14 13 11 37 37 H 1.09000 * 109.52253 * 58.60342 * 14 13 11 38 38 H 1.09008 * 109.59011 * 294.84817 * 15 14 13 39 39 H 1.09005 * 109.70915 * 174.49183 * 15 14 13 40 40 H 1.07999 * 119.66097 * 0.03081 * 20 19 17 41 41 H 1.07997 * 119.36348 * 180.28552 * 21 20 19 42 42 H 1.08006 * 120.00366 * 179.76791 * 22 21 20 43 43 H 1.08000 * 120.05633 * 359.95760 * 24 23 22 44 44 H 1.08004 * 119.08894 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.64699 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.58723 * 293.82200 * 29 16 15 47 47 H 1.09001 * 109.58618 * 173.39704 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3796 -4.7137 -0.8424 13 6 1.8247 -6.1420 -0.1236 14 6 0.8292 -7.3040 -0.1560 15 6 0.0319 -7.3246 1.1518 16 7 -0.5858 -6.0062 1.3500 17 6 -1.9114 -5.8944 1.5659 18 8 -2.3989 -4.8062 1.8048 19 6 -2.7707 -7.0914 1.5123 20 6 -2.4854 -8.1985 2.3004 21 6 -3.2946 -9.3267 2.2570 22 6 -4.3821 -9.3866 1.4364 23 6 -4.7050 -8.2924 0.6181 24 6 -5.8154 -8.3093 -0.2419 25 7 -6.0800 -7.2628 -0.9891 26 6 -5.3366 -6.1654 -0.9747 27 6 -4.2387 -6.0515 -0.1746 28 6 -3.8930 -7.1304 0.6528 29 6 0.2693 -4.8121 1.3088 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3557 -2.3880 0.0002 32 1 2.6843 -3.7140 -0.8921 33 1 2.6856 -3.7148 0.8879 34 1 2.4104 -6.1399 -1.0429 35 1 2.4910 -6.2584 0.7310 36 1 1.3703 -8.2436 -0.2670 37 1 0.1468 -7.1757 -0.9962 38 1 0.7008 -7.5435 1.9843 39 1 -0.7449 -8.0873 1.0969 40 1 -1.6280 -8.1806 2.9569 41 1 -3.0557 -10.1741 2.8825 42 1 -4.9951 -10.2756 1.4162 43 1 -6.4503 -9.1818 -0.2886 44 1 -5.6082 -5.3388 -1.6145 45 1 -3.6462 -5.1485 -0.1783 46 1 0.9576 -4.8262 2.1539 47 1 -0.3508 -3.9169 1.3548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752813153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:01 Heat of formation + Delta-G solvation = 7.892554 kcal Electronic energy + Delta-G solvation = -29314.462381 eV Core-core repulsion = 25461.036857 eV Total energy + Delta-G solvation = -3853.425525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28736 -41.04693 -39.04498 -38.22427 -36.93529 -34.79213 -33.99831 -33.17246 -32.37849 -31.45863 -30.72476 -27.26338 -26.88601 -25.40283 -25.07230 -24.57794 -24.02978 -22.87502 -21.57618 -20.38136 -19.42763 -19.24567 -18.50433 -17.85753 -17.70951 -17.05370 -16.78885 -16.19951 -16.12235 -15.87421 -15.77023 -15.44073 -15.29803 -15.26254 -14.88142 -14.78497 -14.32248 -14.21655 -14.14415 -13.91167 -13.66319 -13.31099 -13.01516 -12.91750 -12.72847 -12.59309 -12.54909 -12.19123 -11.96456 -11.95769 -11.79761 -11.63819 -11.33842 -11.23752 -11.02314 -10.98318 -10.59423 -10.13985 -9.83279 -9.18142 -9.16574 -8.45840 -5.40105 -0.86929 -0.21384 0.60116 1.41296 1.53478 1.65150 1.77662 1.81393 2.02076 2.68169 2.96105 3.20880 3.35090 3.39489 3.52417 3.59609 3.68728 3.74269 3.75225 3.79124 3.85758 3.97215 3.98644 4.14378 4.17177 4.28648 4.30364 4.46816 4.47564 4.60947 4.65943 4.66957 4.68006 4.74933 4.78259 4.82935 4.88716 4.99249 5.03869 5.08729 5.20322 5.22749 5.29356 5.35592 5.37390 5.52316 5.54191 5.74238 6.21425 6.39858 6.86943 6.92066 7.01808 7.91658 8.05131 9.05013 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.002968 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.944842 B = 9432.766061 C =10642.590978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.110 4.110 3 Si 1.132 2.868 4 H -0.294 1.294 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.072 0.928 9 N -0.761 5.761 10 C 0.164 3.836 11 C -0.095 4.095 12 H 0.045 0.955 13 C -0.105 4.105 14 C -0.127 4.127 15 C 0.092 3.908 16 N -0.598 5.598 17 C 0.550 3.450 18 O -0.586 6.586 19 C -0.150 4.150 20 C -0.045 4.045 21 C -0.121 4.121 22 C -0.044 4.044 23 C -0.130 4.130 24 C 0.159 3.841 25 N -0.512 5.512 26 C 0.078 3.922 27 C -0.181 4.181 28 C -0.009 4.009 29 C 0.129 3.871 30 H 0.238 0.762 31 H 0.356 0.644 32 H 0.026 0.974 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.155 0.845 41 H 0.181 0.819 42 H 0.187 0.813 43 H 0.213 0.787 44 H 0.158 0.842 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -32.019 3.938 32.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.300 4.300 3 Si 0.956 3.044 4 H -0.220 1.220 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.090 0.910 9 N -0.405 5.405 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.064 0.936 13 C -0.143 4.143 14 C -0.165 4.165 15 C -0.029 4.029 16 N -0.329 5.329 17 C 0.339 3.661 18 O -0.467 6.467 19 C -0.153 4.153 20 C -0.065 4.065 21 C -0.138 4.138 22 C -0.063 4.063 23 C -0.132 4.132 24 C -0.012 4.012 25 N -0.221 5.221 26 C -0.064 4.064 27 C -0.201 4.201 28 C -0.014 4.014 29 C 0.006 3.994 30 H 0.048 0.952 31 H 0.187 0.813 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.173 0.827 41 H 0.199 0.801 42 H 0.204 0.796 43 H 0.229 0.771 44 H 0.176 0.824 45 H 0.124 0.876 46 H 0.096 0.904 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.348 -29.684 3.445 30.358 hybrid contribution 0.468 -0.177 0.273 0.570 sum -4.880 -29.861 3.718 30.485 Atomic orbital electron populations 1.71001 1.07413 1.27554 1.56295 1.27415 0.97023 1.05159 1.00433 0.82601 0.73319 0.71112 0.77392 1.22042 1.20003 1.19931 1.20432 0.92510 0.87033 1.46775 0.91008 1.42708 1.04659 1.02400 1.90748 1.20777 0.93473 0.83768 0.98215 1.21563 0.96976 0.96684 0.96241 0.93615 1.21513 0.97742 0.91340 1.03704 1.21905 0.97906 0.99922 0.96729 1.22393 0.98563 0.82597 0.99323 1.48200 1.06133 1.09149 1.69426 1.18829 0.82452 0.88737 0.76037 1.90839 1.74802 1.30492 1.50553 1.19662 0.97223 0.95289 1.03171 1.21841 0.99290 0.90611 0.94709 1.21333 0.94343 0.98409 0.99751 1.21711 0.96365 0.96973 0.91249 1.19295 0.97561 0.94918 1.01391 1.24064 0.92714 0.96618 0.87822 1.67522 1.30472 1.00942 1.23122 1.22317 0.91045 0.96214 0.96834 1.21887 1.00170 0.99155 0.98925 1.18066 0.94064 0.94445 0.94854 1.21408 0.92745 0.87259 0.98004 0.95156 0.81268 0.95597 0.95332 0.90612 0.89726 0.86549 0.93219 0.88115 0.87461 0.82733 0.80143 0.79610 0.77086 0.82445 0.87621 0.90425 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -66.07 13.70 21.65 0.30 -65.78 16 2 C -0.11 -6.80 5.50 84.86 0.47 -6.33 16 3 Si 1.13 54.61 29.92 68.60 2.05 56.66 16 4 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.34 -20.12 9.99 84.03 0.84 -19.28 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.76 -41.74 5.37 -343.46 -1.85 -43.58 16 10 C 0.16 6.86 5.65 86.38 0.49 7.35 16 11 C -0.09 -3.20 2.38 -10.72 -0.03 -3.23 16 12 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 13 C -0.11 -2.32 5.17 30.62 0.16 -2.16 16 14 C -0.13 -2.13 6.08 30.67 0.19 -1.94 16 15 C 0.09 1.56 5.56 86.36 0.48 2.04 16 16 N -0.60 -17.26 2.97 -822.74 -2.45 -19.71 16 17 C 0.55 18.71 6.49 86.67 0.56 19.28 16 18 O -0.59 -26.89 15.30 -4.06 -0.06 -26.95 16 19 C -0.15 -3.80 4.89 -19.92 -0.10 -3.90 16 20 C -0.04 -0.65 7.42 22.58 0.17 -0.48 16 21 C -0.12 -0.89 9.92 21.99 0.22 -0.67 16 22 C -0.04 -0.35 9.78 22.36 0.22 -0.13 16 23 C -0.13 -2.29 5.74 -21.33 -0.12 -2.41 16 24 C 0.16 2.66 11.05 85.32 0.94 3.60 16 25 N -0.51 -12.46 10.30 -195.40 -2.01 -14.48 16 26 C 0.08 2.18 11.07 84.14 0.93 3.11 16 27 C -0.18 -5.77 9.30 22.32 0.21 -5.56 16 28 C -0.01 -0.23 5.77 -21.11 -0.12 -0.35 16 29 C 0.13 4.59 5.51 86.36 0.48 5.06 16 30 H 0.24 16.52 6.77 -92.71 -0.63 15.89 16 31 H 0.36 21.03 5.73 -92.70 -0.53 20.49 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.11 1.42 4.75 -2.38 -0.01 1.41 16 40 H 0.16 1.54 7.39 -2.91 -0.02 1.52 16 41 H 0.18 -0.19 8.06 -2.91 -0.02 -0.21 16 42 H 0.19 -0.22 8.06 -2.91 -0.02 -0.25 16 43 H 0.21 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.11 4.07 6.62 -2.91 -0.02 4.05 16 46 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.05 2.15 6.23 -2.39 -0.01 2.14 16 Total: -1.00 -91.72 376.99 2.56 -89.15 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.60 Total: 30.68 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.98 Total: -6.00 kcal Atomic # 7 Polarization: -137.53 SS G_CDS: -6.01 Total: -143.54 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.06 Total: -26.95 kcal Atomic # 14 Polarization: 54.61 SS G_CDS: 2.05 Total: 56.66 kcal Total: -91.72 2.56 -89.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752813153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.046 kcal (2) G-P(sol) polarization free energy of solvation -91.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds