Wall clock time and date at job start Tue Mar 31 2020 22:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47530 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47081 * 299.99834 * 3 2 1 6 6 H 1.48500 * 109.47043 * 59.99578 * 3 2 1 7 7 C 1.38810 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00247 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99989 * 174.38001 * 9 7 2 11 11 C 1.52995 * 110.01898 * 61.54775 * 10 9 7 12 12 N 1.46508 * 109.47038 * 55.25832 * 11 10 9 13 13 C 1.34768 * 120.00070 * 175.53536 * 12 11 10 14 14 O 1.21553 * 120.00073 * 0.02562 * 13 12 11 15 15 C 1.47888 * 120.00139 * 180.02562 * 13 12 11 16 16 C 1.40574 * 119.70447 * 0.02562 * 15 13 12 17 17 C 1.35812 * 120.73996 * 180.02562 * 16 15 13 18 18 C 1.40549 * 119.97817 * 359.97438 * 17 16 15 19 19 C 1.40823 * 121.13570 * 179.97438 * 18 17 16 20 20 C 1.36556 * 118.19488 * 180.02562 * 19 18 17 21 21 C 1.39417 * 119.94391 * 359.97438 * 20 19 18 22 22 N 1.31021 * 121.70947 * 0.03215 * 21 20 19 23 23 C 1.33743 * 121.35125 * 359.96883 * 22 21 20 24 24 C 1.38397 * 119.70891 * 180.02562 * 15 13 12 25 25 C 1.54261 * 110.07157 * 182.97194 * 10 9 7 26 26 C 1.54885 * 104.20129 * 95.69446 * 25 10 9 27 27 C 1.54896 * 102.74899 * 37.94151 * 26 25 10 28 28 C 1.53884 * 110.02960 * 300.15671 * 10 9 7 29 29 H 0.96999 * 120.00546 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99577 * 354.37893 * 9 7 2 31 31 H 1.09003 * 109.47263 * 295.26104 * 11 10 9 32 32 H 1.09002 * 109.46873 * 175.25675 * 11 10 9 33 33 H 0.97003 * 119.99087 * 355.53851 * 12 11 10 34 34 H 1.08003 * 119.63089 * 359.97438 * 16 15 13 35 35 H 1.07991 * 120.01198 * 179.72660 * 17 16 15 36 36 H 1.07999 * 120.90074 * 0.02562 * 19 18 17 37 37 H 1.08000 * 120.02645 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.14663 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.23547 * 359.97222 * 24 15 13 40 40 H 1.09004 * 110.48818 * 214.37302 * 25 10 9 41 41 H 1.09002 * 110.48720 * 337.01102 * 25 10 9 42 42 H 1.09003 * 110.75504 * 279.62873 * 26 25 10 43 43 H 1.08995 * 110.76168 * 156.25513 * 26 25 10 44 44 H 1.08992 * 110.48587 * 203.38282 * 27 26 25 45 45 H 1.08997 * 110.48660 * 80.73512 * 27 26 25 46 46 H 1.08994 * 110.03118 * 359.95613 * 28 10 9 47 47 H 1.09005 * 110.02687 * 121.38182 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0529 -3.6537 -0.1253 11 6 3.0122 -3.8250 1.0541 12 7 2.2663 -3.7149 2.3103 13 6 2.8917 -3.9229 3.4858 14 8 4.0747 -4.2015 3.5039 15 6 2.1387 -3.8124 4.7538 16 6 0.7706 -3.4904 4.7256 17 6 0.0589 -3.3829 5.8773 18 6 0.6899 -3.5950 7.1152 19 6 -0.0245 -3.4893 8.3242 20 6 0.6484 -3.7071 9.4923 21 6 2.0056 -4.0248 9.4648 22 7 2.6674 -4.1223 8.3382 23 6 2.0681 -3.9212 7.1596 24 6 2.7870 -4.0268 5.9575 25 6 1.0593 -4.8326 -0.1740 26 6 0.8681 -5.1063 -1.6865 27 6 2.2901 -4.8795 -2.2573 28 6 2.8355 -3.6834 -1.4500 29 1 -0.4851 0.8400 -0.0004 30 1 0.3592 -2.3901 0.0821 31 1 3.7768 -3.0489 1.0163 32 1 3.4861 -4.8050 0.9976 33 1 1.3223 -3.4922 2.2957 34 1 0.2801 -3.3258 3.7775 35 1 -0.9906 -3.1306 5.8422 36 1 -1.0759 -3.2427 8.3274 37 1 0.1296 -3.6333 10.4367 38 1 2.5250 -4.1949 10.3963 39 1 3.8381 -4.2743 5.9725 40 1 1.4805 -5.7073 0.3216 41 1 0.1116 -4.5521 0.2857 42 1 0.1606 -4.3997 -2.1205 43 1 0.5433 -6.1329 -1.8554 44 1 2.2407 -4.6332 -3.3178 45 1 2.9102 -5.7617 -2.0981 46 1 2.6735 -2.7566 -2.0002 47 1 3.8988 -3.8199 -1.2524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:45 Heat of formation + Delta-G solvation = 23.074171 kcal Electronic energy + Delta-G solvation = -28960.702774 eV Core-core repulsion = 25107.935574 eV Total energy + Delta-G solvation = -3852.767200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99319 -39.54107 -38.25770 -36.69871 -34.21525 -33.62581 -33.36054 -31.15433 -30.41746 -30.10854 -28.32434 -27.89830 -25.36785 -24.03289 -23.89501 -23.12279 -22.15050 -20.82684 -20.17047 -18.91058 -18.09680 -17.59592 -17.11750 -16.92656 -16.08131 -15.77290 -15.15756 -14.82820 -14.65855 -14.58192 -14.32832 -14.22399 -13.96936 -13.72494 -13.51036 -13.25469 -13.22167 -13.04268 -12.60143 -12.08160 -11.95595 -11.69533 -11.60918 -11.56690 -11.04948 -10.86095 -10.71771 -10.70750 -10.60692 -10.52341 -10.37191 -10.10109 -9.86504 -9.71964 -9.69156 -9.60334 -8.96930 -8.96344 -8.53104 -8.36434 -7.06449 -5.85314 -3.14647 0.14566 0.52341 1.76741 2.46876 3.38904 3.42250 3.47085 3.47808 3.52424 4.04745 4.15683 4.39895 4.52357 4.53825 4.67019 4.80003 4.89231 5.02490 5.06836 5.10045 5.15653 5.21493 5.31785 5.53611 5.60791 5.63461 5.70917 5.74715 5.77836 5.90864 5.94021 5.96308 6.07992 6.13007 6.17357 6.22810 6.24316 6.30623 6.34077 6.40830 6.54603 6.58645 6.62407 6.70967 6.80364 6.94226 7.10371 7.69524 7.71355 7.96855 8.33414 8.57888 9.45529 9.98617 10.34381 11.36614 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.003222 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.799050 B = 8688.430527 C = 9943.288669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.188 3.812 11 C 0.117 3.883 12 N -0.692 5.692 13 C 0.550 3.450 14 O -0.549 6.549 15 C -0.106 4.106 16 C -0.083 4.083 17 C -0.102 4.102 18 C -0.088 4.088 19 C -0.060 4.060 20 C -0.173 4.173 21 C 0.125 3.875 22 N -0.466 5.466 23 C 0.116 3.884 24 C -0.030 4.030 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.130 4.130 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.403 0.597 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -11.017 12.282 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.008 4.008 12 N -0.342 5.342 13 C 0.336 3.664 14 O -0.428 6.428 15 C -0.111 4.111 16 C -0.101 4.101 17 C -0.121 4.121 18 C -0.090 4.090 19 C -0.086 4.086 20 C -0.193 4.193 21 C -0.048 4.048 22 N -0.174 5.174 23 C -0.005 4.005 24 C -0.050 4.050 25 C -0.161 4.161 26 C -0.157 4.157 27 C -0.158 4.158 28 C -0.170 4.170 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.240 0.760 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.167 0.833 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.999 -11.257 12.102 16.559 hybrid contribution -1.235 1.536 0.059 1.972 sum -2.234 -9.721 12.161 15.728 Atomic orbital electron populations 1.69649 1.05008 1.25552 1.57635 1.24684 0.95407 0.97507 1.02744 0.86227 0.79080 0.84448 0.77137 1.20518 1.21901 1.21967 1.19148 0.91080 0.83756 1.42466 0.91153 1.42560 1.06054 0.99507 1.87297 1.20463 0.91048 0.87304 0.91610 1.22010 0.95302 1.00248 0.83285 1.45711 1.14336 1.68795 1.05328 1.18127 0.86750 0.77863 0.83677 1.90744 1.15281 1.49307 1.87494 1.20058 0.94230 1.02832 0.93971 1.21115 0.92949 0.96638 0.99439 1.20885 1.00335 1.00118 0.90758 1.18963 0.94421 1.00764 0.94878 1.21523 1.00241 0.95403 0.91411 1.21929 0.96213 1.01813 0.99359 1.22976 0.91646 0.93878 0.96347 1.68018 1.38537 1.13076 0.97785 1.18757 0.90363 0.99112 0.92246 1.21209 1.00692 0.94378 0.88688 1.22587 0.99339 0.97616 0.96598 1.22413 0.97355 1.00203 0.95689 1.22309 0.96238 0.98150 0.99144 1.22659 0.98503 0.98898 0.96912 0.93605 0.78179 0.91655 0.92415 0.75967 0.84538 0.84560 0.84201 0.84485 0.82349 0.83291 0.91751 0.91598 0.91250 0.92594 0.92427 0.92565 0.89870 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.08 13.07 55.49 0.73 -25.36 16 2 C -0.01 -0.19 5.50 -17.44 -0.10 -0.29 16 3 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.23 -5.89 8.52 -15.06 -0.13 -6.02 16 8 H 0.07 1.81 7.27 -52.49 -0.38 1.43 16 9 N -0.71 -15.48 4.53 -46.20 -0.21 -15.69 16 10 C 0.19 3.32 0.68 -130.70 -0.09 3.23 16 11 C 0.12 2.12 4.04 -4.04 -0.02 2.10 16 12 N -0.69 -11.95 5.18 -61.23 -0.32 -12.27 16 13 C 0.55 9.89 7.77 -12.31 -0.10 9.80 16 14 O -0.55 -11.44 16.29 5.32 0.09 -11.35 16 15 C -0.11 -1.64 5.87 -105.01 -0.62 -2.26 16 16 C -0.08 -1.10 9.44 -39.57 -0.37 -1.48 16 17 C -0.10 -1.18 9.74 -39.58 -0.39 -1.57 16 18 C -0.09 -1.07 5.75 -106.73 -0.61 -1.68 16 19 C -0.06 -0.55 9.89 -39.21 -0.39 -0.93 16 20 C -0.17 -1.39 10.03 -39.75 -0.40 -1.79 16 21 C 0.13 1.21 11.15 -17.46 -0.19 1.02 16 22 N -0.47 -6.24 10.34 -10.98 -0.11 -6.35 16 23 C 0.12 1.64 6.60 -84.87 -0.56 1.08 16 24 C -0.03 -0.46 9.56 -38.69 -0.37 -0.83 16 25 C -0.12 -1.83 5.72 -25.08 -0.14 -1.98 16 26 C -0.12 -1.67 6.91 -24.74 -0.17 -1.84 16 27 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 28 C -0.13 -2.22 5.93 -25.61 -0.15 -2.37 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.38 8.88 7.45 -40.82 -0.30 8.58 16 31 H 0.07 1.34 7.46 -51.93 -0.39 0.96 16 32 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 33 H 0.40 6.62 5.98 -40.82 -0.24 6.37 16 34 H 0.14 1.70 6.34 -52.48 -0.33 1.36 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.15 2.36 7.60 -52.49 -0.40 1.96 16 40 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 41 H 0.07 0.98 7.72 -51.93 -0.40 0.57 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.65 7.36 -51.93 -0.38 1.27 16 47 H 0.05 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -31.19 383.97 -10.60 -41.79 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -6.57 Total: 14.33 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -4.96 Total: -7.70 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.09 Total: -59.67 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.19 -10.60 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.864 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds