Wall clock time and date at job start Tue Mar 31 2020 22:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47530 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47081 * 299.99834 * 3 2 1 6 6 H 1.48500 * 109.47043 * 59.99578 * 3 2 1 7 7 C 1.38810 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00247 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99989 * 174.38001 * 9 7 2 11 11 C 1.52995 * 110.01898 * 61.54775 * 10 9 7 12 12 N 1.46508 * 109.47038 * 55.25832 * 11 10 9 13 13 C 1.34768 * 120.00070 * 175.53536 * 12 11 10 14 14 O 1.21553 * 120.00073 * 0.02562 * 13 12 11 15 15 C 1.47888 * 120.00139 * 180.02562 * 13 12 11 16 16 C 1.40574 * 119.70447 * 0.02562 * 15 13 12 17 17 C 1.35812 * 120.73996 * 180.02562 * 16 15 13 18 18 C 1.40549 * 119.97817 * 359.97438 * 17 16 15 19 19 C 1.40823 * 121.13570 * 179.97438 * 18 17 16 20 20 C 1.36556 * 118.19488 * 180.02562 * 19 18 17 21 21 C 1.39417 * 119.94391 * 359.97438 * 20 19 18 22 22 N 1.31021 * 121.70947 * 0.03215 * 21 20 19 23 23 C 1.33743 * 121.35125 * 359.96883 * 22 21 20 24 24 C 1.38397 * 119.70891 * 180.02562 * 15 13 12 25 25 C 1.54261 * 110.07157 * 182.97194 * 10 9 7 26 26 C 1.54885 * 104.20129 * 95.69446 * 25 10 9 27 27 C 1.54896 * 102.74899 * 37.94151 * 26 25 10 28 28 C 1.53884 * 110.02960 * 300.15671 * 10 9 7 29 29 H 0.96999 * 120.00546 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99577 * 354.37893 * 9 7 2 31 31 H 1.09003 * 109.47263 * 295.26104 * 11 10 9 32 32 H 1.09002 * 109.46873 * 175.25675 * 11 10 9 33 33 H 0.97003 * 119.99087 * 355.53851 * 12 11 10 34 34 H 1.08003 * 119.63089 * 359.97438 * 16 15 13 35 35 H 1.07991 * 120.01198 * 179.72660 * 17 16 15 36 36 H 1.07999 * 120.90074 * 0.02562 * 19 18 17 37 37 H 1.08000 * 120.02645 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.14663 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.23547 * 359.97222 * 24 15 13 40 40 H 1.09004 * 110.48818 * 214.37302 * 25 10 9 41 41 H 1.09002 * 110.48720 * 337.01102 * 25 10 9 42 42 H 1.09003 * 110.75504 * 279.62873 * 26 25 10 43 43 H 1.08995 * 110.76168 * 156.25513 * 26 25 10 44 44 H 1.08992 * 110.48587 * 203.38282 * 27 26 25 45 45 H 1.08997 * 110.48660 * 80.73512 * 27 26 25 46 46 H 1.08994 * 110.03118 * 359.95613 * 28 10 9 47 47 H 1.09005 * 110.02687 * 121.38182 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0529 -3.6537 -0.1253 11 6 3.0122 -3.8250 1.0541 12 7 2.2663 -3.7149 2.3103 13 6 2.8917 -3.9229 3.4858 14 8 4.0747 -4.2015 3.5039 15 6 2.1387 -3.8124 4.7538 16 6 0.7706 -3.4904 4.7256 17 6 0.0589 -3.3829 5.8773 18 6 0.6899 -3.5950 7.1152 19 6 -0.0245 -3.4893 8.3242 20 6 0.6484 -3.7071 9.4923 21 6 2.0056 -4.0248 9.4648 22 7 2.6674 -4.1223 8.3382 23 6 2.0681 -3.9212 7.1596 24 6 2.7870 -4.0268 5.9575 25 6 1.0593 -4.8326 -0.1740 26 6 0.8681 -5.1063 -1.6865 27 6 2.2901 -4.8795 -2.2573 28 6 2.8355 -3.6834 -1.4500 29 1 -0.4851 0.8400 -0.0004 30 1 0.3592 -2.3901 0.0821 31 1 3.7768 -3.0489 1.0163 32 1 3.4861 -4.8050 0.9976 33 1 1.3223 -3.4922 2.2957 34 1 0.2801 -3.3258 3.7775 35 1 -0.9906 -3.1306 5.8422 36 1 -1.0759 -3.2427 8.3274 37 1 0.1296 -3.6333 10.4367 38 1 2.5250 -4.1949 10.3963 39 1 3.8381 -4.2743 5.9725 40 1 1.4805 -5.7073 0.3216 41 1 0.1116 -4.5521 0.2857 42 1 0.1606 -4.3997 -2.1205 43 1 0.5433 -6.1329 -1.8554 44 1 2.2407 -4.6332 -3.3178 45 1 2.9102 -5.7617 -2.0981 46 1 2.6735 -2.7566 -2.0002 47 1 3.8988 -3.8199 -1.2524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753670303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:44 Heat of formation + Delta-G solvation = 3.908978 kcal Electronic energy + Delta-G solvation = -28961.533839 eV Core-core repulsion = 25107.935574 eV Total energy + Delta-G solvation = -3853.598265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94282 -40.88263 -39.63137 -37.73240 -35.65306 -35.17629 -34.48302 -32.57250 -31.73131 -31.05417 -29.62348 -29.41751 -26.66041 -25.50374 -24.88330 -24.52684 -23.10879 -22.08858 -21.39470 -20.31759 -19.38647 -18.95152 -18.51707 -17.91855 -17.23649 -17.12172 -16.61083 -16.25405 -15.95632 -15.79153 -15.50177 -15.35398 -15.21788 -14.96394 -14.77144 -14.58189 -14.46948 -14.04627 -13.91795 -13.51925 -13.26803 -12.94778 -12.91806 -12.72301 -12.64781 -12.53227 -12.25567 -12.07876 -11.84141 -11.79284 -11.56941 -11.55076 -11.44010 -11.32848 -11.11238 -10.88989 -10.50573 -10.10127 -9.79603 -9.34770 -8.96484 -7.91827 -5.17262 -0.78864 -0.37525 0.85682 1.42300 1.44852 1.46391 1.52425 2.14309 2.28977 2.55881 3.07756 3.27484 3.39456 3.52366 3.65344 3.74653 3.81362 3.85649 3.93826 3.95565 4.03432 4.06316 4.12759 4.28187 4.43824 4.55898 4.56334 4.69081 4.71918 4.74387 4.84287 4.85999 4.93226 4.98264 5.02106 5.07622 5.13100 5.17126 5.20271 5.28057 5.31149 5.39809 5.42714 5.48559 5.53980 5.63647 5.69964 5.76671 6.32550 6.55168 6.89701 7.15734 7.40243 8.12329 8.38461 9.30496 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.003222 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.799050 B = 8688.430527 C = 9943.288669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.059 4.059 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.215 4.215 8 H 0.061 0.939 9 N -0.714 5.714 10 C 0.185 3.815 11 C 0.124 3.876 12 N -0.687 5.687 13 C 0.547 3.453 14 O -0.587 6.587 15 C -0.120 4.120 16 C -0.101 4.101 17 C -0.085 4.085 18 C -0.100 4.100 19 C -0.059 4.059 20 C -0.160 4.160 21 C 0.127 3.873 22 N -0.510 5.510 23 C 0.094 3.906 24 C -0.048 4.048 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.114 4.114 28 C -0.131 4.131 29 H 0.249 0.751 30 H 0.377 0.623 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.141 0.859 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.191 0.809 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.050 0.950 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -12.233 14.279 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.226 1.226 7 C -0.347 4.347 8 H 0.079 0.921 9 N -0.354 5.354 10 C 0.094 3.906 11 C -0.002 4.002 12 N -0.336 5.336 13 C 0.335 3.665 14 O -0.469 6.469 15 C -0.125 4.125 16 C -0.119 4.119 17 C -0.103 4.103 18 C -0.103 4.103 19 C -0.084 4.084 20 C -0.179 4.179 21 C -0.046 4.046 22 N -0.218 5.218 23 C -0.025 4.025 24 C -0.068 4.068 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.151 4.151 28 C -0.171 4.171 29 H 0.058 0.942 30 H 0.211 0.789 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.159 0.841 35 H 0.190 0.810 36 H 0.195 0.805 37 H 0.199 0.801 38 H 0.208 0.792 39 H 0.146 0.854 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.023 -12.500 14.085 19.072 hybrid contribution -0.559 1.844 -0.343 1.958 sum -3.582 -10.655 13.742 17.754 Atomic orbital electron populations 1.69741 1.05740 1.25442 1.59849 1.25170 0.96052 0.99638 1.04379 0.85479 0.78200 0.82028 0.76519 1.20400 1.22188 1.22559 1.19250 0.90751 0.85042 1.39706 0.92093 1.42597 1.05749 1.00039 1.87059 1.20696 0.91606 0.86768 0.91533 1.21897 0.94790 0.99729 0.83811 1.45666 1.14432 1.68510 1.05015 1.18589 0.86460 0.76847 0.84633 1.90705 1.16958 1.51148 1.88104 1.19870 0.95270 1.04869 0.92490 1.21145 0.91982 0.98195 1.00605 1.21273 1.01631 0.97633 0.89793 1.19259 0.93755 1.00694 0.96566 1.21993 1.01873 0.94324 0.90255 1.22423 0.95359 0.99209 1.00946 1.23725 0.92932 0.91599 0.96297 1.68011 1.39980 1.15298 0.98547 1.18811 0.91517 1.00139 0.92050 1.21127 1.00031 0.95768 0.89840 1.22554 0.98476 0.96634 0.97788 1.22398 0.96798 1.01539 0.94454 1.22295 0.96512 0.97371 0.98953 1.22601 0.98943 0.99039 0.96499 0.94230 0.78896 0.94880 0.91188 0.75358 0.84117 0.81046 0.80500 0.80088 0.79181 0.85449 0.89935 0.91454 0.92886 0.89592 0.91742 0.90307 0.93075 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.55 13.07 21.65 0.28 -54.26 16 2 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 3 Si 0.95 45.88 29.55 68.60 2.03 47.91 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 7 C -0.22 -11.13 8.52 84.03 0.72 -10.41 16 8 H 0.06 3.24 7.27 -2.91 -0.02 3.22 16 9 N -0.71 -31.57 4.53 -300.07 -1.36 -32.93 16 10 C 0.18 6.53 0.68 4.33 0.00 6.53 16 11 C 0.12 4.58 4.04 86.38 0.35 4.93 16 12 N -0.69 -24.51 5.18 -465.92 -2.41 -26.92 16 13 C 0.55 20.79 7.77 86.80 0.67 21.47 16 14 O -0.59 -26.09 16.29 -3.88 -0.06 -26.15 16 15 C -0.12 -3.93 5.87 -20.11 -0.12 -4.05 16 16 C -0.10 -2.68 9.44 22.28 0.21 -2.47 16 17 C -0.09 -1.80 9.74 22.27 0.22 -1.59 16 18 C -0.10 -2.25 5.75 -21.23 -0.12 -2.37 16 19 C -0.06 -0.83 9.89 22.51 0.22 -0.60 16 20 C -0.16 -1.84 10.03 22.16 0.22 -1.62 16 21 C 0.13 2.11 11.15 85.10 0.95 3.06 16 22 N -0.51 -13.45 10.34 -188.66 -1.95 -15.40 16 23 C 0.09 2.70 6.60 40.25 0.27 2.96 16 24 C -0.05 -1.57 9.56 22.85 0.22 -1.35 16 25 C -0.12 -3.29 5.72 31.67 0.18 -3.11 16 26 C -0.11 -2.95 6.91 31.89 0.22 -2.73 16 27 C -0.11 -3.00 6.83 31.67 0.22 -2.79 16 28 C -0.13 -4.46 5.93 31.32 0.19 -4.28 16 29 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.38 17.71 7.45 -92.71 -0.69 17.02 16 31 H 0.03 1.43 7.46 -2.39 -0.02 1.41 16 32 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 33 H 0.41 13.69 5.98 -92.71 -0.55 13.14 16 34 H 0.14 3.50 6.34 -2.91 -0.02 3.48 16 35 H 0.17 2.34 8.06 -2.92 -0.02 2.32 16 36 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.13 4.54 7.60 -2.91 -0.02 4.52 16 40 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 41 H 0.07 1.90 7.72 -2.39 -0.02 1.88 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 2.07 7.36 -2.39 -0.02 2.05 16 47 H 0.06 1.84 7.67 -2.38 -0.02 1.82 16 Total: -1.00 -71.90 383.97 1.37 -70.54 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.24 Total: 38.40 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.08 Total: -1.17 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.44 Total: -129.52 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.90 1.37 -70.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.446 kcal (2) G-P(sol) polarization free energy of solvation -71.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds