Wall clock time and date at job start Tue Mar 31 2020 22:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48503 * 109.47441 * 240.00231 * 3 2 1 5 5 H 1.48501 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47121 * 119.99829 * 3 2 1 7 7 C 1.38803 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00785 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00003 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00172 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47307 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.05797 * 53.57700 * 11 10 9 13 13 C 1.54266 * 110.02775 * 292.16550 * 11 10 9 14 14 C 1.54893 * 104.19520 * 217.10370 * 13 11 10 15 15 C 1.54889 * 102.74401 * 37.94161 * 14 13 11 16 16 C 1.53873 * 110.03264 * 174.99924 * 11 10 9 17 17 H 1.09006 * 110.06778 * 238.58745 * 16 11 10 18 18 N 1.46493 * 110.03431 * 359.97438 * 16 11 10 19 19 C 1.34774 * 120.00500 * 203.62555 * 18 16 11 20 20 O 1.21556 * 119.99442 * 359.97438 * 19 18 16 21 21 C 1.47890 * 120.00493 * 180.02562 * 19 18 16 22 22 C 1.40600 * 119.72742 * 0.02562 * 21 19 18 23 23 C 1.35841 * 120.94862 * 179.97438 * 22 21 19 24 24 C 1.40495 * 119.88226 * 359.97438 * 23 22 21 25 25 C 1.40487 * 121.83725 * 179.97438 * 24 23 22 26 26 N 1.31206 * 119.94134 * 179.97438 * 25 24 23 27 27 C 1.32568 * 122.80086 * 0.02562 * 26 25 24 28 28 C 1.36220 * 121.84639 * 359.97438 * 27 26 25 29 29 C 1.40764 * 118.67614 * 359.72665 * 28 27 26 30 30 C 1.38531 * 119.72856 * 179.97438 * 21 19 18 31 31 H 0.97002 * 120.00599 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99901 * 359.97438 * 9 7 2 33 33 H 1.08992 * 109.47547 * 59.99519 * 10 9 7 34 34 H 1.09002 * 109.46877 * 300.00002 * 10 9 7 35 35 H 1.09002 * 110.49073 * 98.42714 * 13 11 10 36 36 H 1.09005 * 110.48730 * 335.77943 * 13 11 10 37 37 H 1.08994 * 110.75669 * 279.63207 * 14 13 11 38 38 H 1.09000 * 110.75700 * 156.25546 * 14 13 11 39 39 H 1.09006 * 110.48349 * 203.38017 * 15 14 13 40 40 H 1.08997 * 110.60202 * 80.79397 * 15 14 13 41 41 H 0.97003 * 119.99682 * 23.62324 * 18 16 11 42 42 H 1.07998 * 119.52167 * 0.02562 * 22 21 19 43 43 H 1.08003 * 120.05757 * 180.02562 * 23 22 21 44 44 H 1.08005 * 120.02865 * 0.02562 * 25 24 23 45 45 H 1.07999 * 119.07283 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.65881 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.36316 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3593 -4.7087 -0.8253 13 6 0.3045 -4.8663 1.3408 14 6 0.1417 -6.3787 1.6328 15 6 1.4875 -6.9682 1.1425 16 6 1.8162 -6.1561 -0.1272 17 1 1.4773 -6.6941 -1.0126 18 7 3.2587 -5.9143 -0.2094 19 6 4.0638 -6.8294 -0.7845 20 8 3.5930 -7.8557 -1.2346 21 6 5.5201 -6.5855 -0.8670 22 6 6.0588 -5.3972 -0.3431 23 6 7.3927 -5.1480 -0.4050 24 6 8.2533 -6.0863 -0.9990 25 6 9.6387 -5.8705 -1.0856 26 7 10.4081 -6.7724 -1.6478 27 6 9.9374 -7.9046 -2.1518 28 6 8.6101 -8.2093 -2.1181 29 6 7.7215 -7.2929 -1.5246 30 6 6.3424 -7.5303 -1.4588 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 2.6849 -3.7145 0.8893 34 1 2.6848 -3.7144 -0.8905 35 1 -0.6708 -4.3894 1.2440 36 1 0.8884 -4.3868 2.1265 37 1 -0.6913 -6.7941 1.0658 38 1 0.0093 -6.5539 2.7004 39 1 1.3756 -8.0252 0.9010 40 1 2.2637 -6.8300 1.8952 41 1 3.6344 -5.0954 0.1501 42 1 5.4027 -4.6725 0.1159 43 1 7.7911 -4.2305 0.0024 44 1 10.0703 -4.9633 -0.6890 45 1 10.6256 -8.6053 -2.6008 46 1 8.2474 -9.1376 -2.5341 47 1 5.9256 -8.4423 -1.8600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753900539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:54 Heat of formation + Delta-G solvation = 26.501843 kcal Electronic energy + Delta-G solvation = -28492.306118 eV Core-core repulsion = 24639.687552 eV Total energy + Delta-G solvation = -3852.618565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21547 -40.13164 -38.28912 -37.07909 -34.43183 -33.86351 -33.25580 -31.59270 -31.46363 -29.93208 -28.63356 -27.72392 -25.05435 -24.52636 -24.09149 -22.60372 -22.55339 -21.26341 -20.51932 -19.13768 -18.65119 -17.93399 -17.24811 -16.81214 -16.49697 -15.88548 -15.28987 -15.21028 -15.06164 -14.63354 -14.57461 -14.38812 -14.01448 -13.94588 -13.77418 -13.58650 -13.13211 -13.10078 -12.95567 -12.68790 -12.35157 -12.18154 -11.68195 -11.43219 -11.34610 -10.89796 -10.89167 -10.84548 -10.56981 -10.54436 -10.44662 -10.36065 -10.09976 -10.01931 -9.80322 -9.74475 -9.43737 -9.03246 -8.89854 -8.42003 -7.00260 -5.82838 -3.12309 -0.09092 0.38315 1.53562 2.29555 3.09021 3.19220 3.39206 3.43783 3.45032 3.78597 4.07262 4.19295 4.33916 4.43949 4.49515 4.56974 4.68618 4.70540 4.78105 4.83422 4.92686 5.06293 5.25046 5.35354 5.38962 5.41216 5.48342 5.58185 5.60800 5.61777 5.70281 5.72524 5.81399 5.87863 5.96263 5.98116 6.01642 6.11615 6.16575 6.24678 6.27116 6.38658 6.39912 6.52955 6.54211 6.65062 6.75263 7.48040 7.61082 7.62311 8.13827 8.35454 9.46987 10.03718 10.38416 11.39718 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.003036 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.682331 B = 9221.263409 C =11796.684323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.156 3.844 11 C -0.108 4.108 12 H 0.084 0.916 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.090 0.910 18 N -0.712 5.712 19 C 0.554 3.446 20 O -0.541 6.541 21 C -0.108 4.108 22 C -0.093 4.093 23 C -0.088 4.088 24 C -0.098 4.098 25 C 0.145 3.855 26 N -0.485 5.485 27 C 0.071 3.929 28 C -0.145 4.145 29 C -0.035 4.035 30 C -0.046 4.046 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.016 0.984 34 H 0.021 0.979 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.407 0.593 42 H 0.134 0.866 43 H 0.142 0.858 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.141 0.859 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.335 -16.805 0.358 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.028 3.972 11 C -0.128 4.128 12 H 0.102 0.898 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.108 0.892 18 N -0.366 5.366 19 C 0.341 3.659 20 O -0.419 6.419 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.108 4.108 24 C -0.100 4.100 25 C -0.027 4.027 26 N -0.193 5.193 27 C -0.072 4.072 28 C -0.164 4.164 29 C -0.040 4.040 30 C -0.065 4.065 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.152 0.848 43 H 0.160 0.840 44 H 0.183 0.817 45 H 0.171 0.829 46 H 0.159 0.841 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.021 -17.375 -0.089 22.326 hybrid contribution -0.618 1.270 0.172 1.423 sum 13.403 -16.105 0.083 20.952 Atomic orbital electron populations 1.69642 1.05130 1.25879 1.57308 1.24737 0.95510 0.97710 1.02772 0.86280 0.78568 0.83543 0.77849 1.21226 1.21660 1.21227 1.19145 0.90930 0.84150 1.43296 0.91293 1.42303 1.05896 0.99632 1.89341 1.20688 0.93460 0.85820 0.97189 1.22228 0.98003 0.93341 0.99187 0.89808 1.22364 1.00825 0.95131 0.96602 1.22491 0.96748 0.96279 1.00716 1.22763 0.97880 0.99407 0.96977 1.21705 0.78733 0.96234 0.98969 0.89162 1.46357 1.08124 1.22483 1.59615 1.18253 0.86017 0.83609 0.78037 1.90755 1.76387 1.26766 1.48026 1.20090 0.93693 0.95957 1.01541 1.21076 0.95953 0.95976 0.98119 1.20928 0.92913 0.98799 0.98110 1.19180 0.95740 0.95047 1.00024 1.23288 0.88574 0.97496 0.93326 1.67401 1.40575 1.02449 1.08889 1.22199 0.93816 0.94035 0.97145 1.21989 0.94405 1.00085 0.99964 1.18140 0.93825 0.94189 0.97851 1.21410 0.91043 0.98871 0.95175 0.93379 0.78094 0.96629 0.96178 0.91105 0.90976 0.91496 0.91577 0.91424 0.91317 0.75286 0.84790 0.84031 0.81654 0.82862 0.84144 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 2 C -0.01 -0.30 5.50 -17.44 -0.10 -0.40 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 9 N -0.73 -17.37 5.45 -59.91 -0.33 -17.70 16 10 C 0.16 2.86 4.18 -4.04 -0.02 2.84 16 11 C -0.11 -1.65 2.96 -89.50 -0.27 -1.92 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.60 6.08 -25.07 -0.15 -1.75 16 14 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 15 C -0.13 -1.60 6.53 -25.07 -0.16 -1.77 16 16 C 0.15 2.02 3.20 -66.82 -0.21 1.81 16 17 H 0.09 1.31 7.61 -51.93 -0.39 0.91 16 18 N -0.71 -9.38 4.38 -53.65 -0.23 -9.62 16 19 C 0.55 7.70 7.76 -12.31 -0.10 7.60 16 20 O -0.54 -8.92 15.98 5.32 0.08 -8.83 16 21 C -0.11 -1.29 5.87 -104.95 -0.62 -1.91 16 22 C -0.09 -0.96 9.44 -39.55 -0.37 -1.33 16 23 C -0.09 -0.80 9.77 -39.59 -0.39 -1.18 16 24 C -0.10 -0.97 5.75 -106.78 -0.61 -1.58 16 25 C 0.14 1.31 11.04 -16.97 -0.19 1.13 16 26 N -0.49 -4.98 10.29 -13.14 -0.14 -5.11 16 27 C 0.07 0.62 11.07 -17.96 -0.20 0.42 16 28 C -0.14 -1.25 9.88 -39.35 -0.39 -1.64 16 29 C -0.03 -0.36 5.74 -106.83 -0.61 -0.98 16 30 C -0.05 -0.51 9.38 -38.78 -0.36 -0.87 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.39 9.78 7.55 -40.82 -0.31 9.47 16 33 H 0.02 0.28 7.12 -51.93 -0.37 -0.09 16 34 H 0.02 0.38 7.40 -51.93 -0.38 0.00 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.41 5.07 3.82 -40.82 -0.16 4.91 16 42 H 0.13 1.25 6.34 -52.49 -0.33 0.92 16 43 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.15 1.53 7.62 -52.49 -0.40 1.13 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -32.57 383.42 -10.72 -43.29 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.52 Total: 12.01 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -5.07 Total: -9.82 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.03 Total: -59.12 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.57 -10.72 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753900539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.788 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds