Wall clock time and date at job start Tue Mar 31 2020 23:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99731 * 2 1 4 4 H 1.48499 * 109.47338 * 270.00255 * 3 2 1 5 5 H 1.48506 * 109.46896 * 29.99688 * 3 2 1 6 6 H 1.48496 * 109.47169 * 149.99714 * 3 2 1 7 7 C 1.38809 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00270 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47498 * 180.02562 * 10 9 7 12 12 C 1.53773 * 113.61532 * 174.99668 * 11 10 9 13 13 C 1.53777 * 87.08318 * 139.98251 * 12 11 10 14 14 N 1.46503 * 113.61730 * 89.11530 * 13 12 11 15 15 C 1.34771 * 120.00278 * 156.53142 * 14 13 12 16 16 O 1.21277 * 120.00045 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99942 * 180.02562 * 15 14 13 18 18 C 1.50701 * 109.46975 * 179.97438 * 17 15 14 19 19 C 1.36170 * 120.19467 * 264.99895 * 18 17 15 20 20 C 1.39317 * 120.87133 * 179.74718 * 19 18 17 21 21 C 1.36112 * 121.06505 * 0.25834 * 20 19 18 22 22 C 1.40558 * 119.74663 * 359.97438 * 21 20 19 23 23 N 1.33679 * 121.07060 * 180.02562 * 22 21 20 24 24 C 1.31090 * 121.31973 * 180.02562 * 23 22 21 25 25 C 1.39334 * 121.74870 * 359.95057 * 24 23 22 26 26 C 1.36572 * 119.94037 * 0.02712 * 25 24 23 27 27 C 1.40390 * 120.19237 * 85.25192 * 18 17 15 28 28 C 1.53777 * 87.17060 * 334.52681 * 13 12 11 29 29 H 0.96996 * 120.00640 * 0.02562 * 1 2 3 30 30 H 0.97007 * 120.00172 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47146 * 59.99980 * 10 9 7 32 32 H 1.09004 * 109.47131 * 300.00239 * 10 9 7 33 33 H 1.09006 * 112.84495 * 43.80339 * 11 10 9 34 34 H 1.09002 * 113.61552 * 25.43208 * 12 11 10 35 35 H 1.09001 * 113.61877 * 254.53444 * 12 11 10 36 36 H 1.08997 * 113.62146 * 219.93671 * 13 12 11 37 37 H 0.97003 * 119.99115 * 336.53553 * 14 13 12 38 38 H 1.09002 * 109.47291 * 60.00360 * 17 15 14 39 39 H 1.08996 * 109.47260 * 299.99824 * 17 15 14 40 40 H 1.08002 * 119.56720 * 0.03107 * 19 18 17 41 41 H 1.08001 * 119.47199 * 180.28451 * 20 19 18 42 42 H 1.08002 * 120.12248 * 180.02562 * 21 20 19 43 43 H 1.07993 * 119.12257 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.02677 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.92151 * 179.97438 * 26 25 24 46 46 H 1.09005 * 113.61705 * 140.02157 * 28 13 12 47 47 H 1.09004 * 113.61816 * 270.92376 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 6 1.7308 -6.1999 -0.1241 13 6 0.7050 -6.7001 0.9065 14 7 -0.5382 -7.1908 0.3066 15 6 -1.3109 -8.0669 0.9788 16 8 -0.9774 -8.4487 2.0805 17 6 -2.5895 -8.5721 0.3613 18 6 -3.2600 -9.5324 1.3096 19 6 -3.0539 -10.8728 1.1863 20 6 -3.6624 -11.7728 2.0584 21 6 -4.4834 -11.3401 3.0541 22 6 -4.7247 -9.9643 3.2106 23 7 -5.5258 -9.5102 4.1796 24 6 -5.7547 -8.2282 4.3297 25 6 -5.1765 -7.2772 3.4914 26 6 -4.3473 -7.6732 2.4811 27 6 -4.1050 -9.0507 2.3220 28 6 0.6159 -5.2493 1.4086 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6849 -3.7144 0.8894 32 1 2.6850 -3.7144 -0.8905 33 1 0.2383 -4.6702 -0.6968 34 1 2.7590 -6.2219 0.2371 35 1 1.6174 -6.6536 -1.1087 36 1 1.1228 -7.3907 1.6389 37 1 -0.8051 -6.8852 -0.5745 38 1 -2.3637 -9.0840 -0.5742 39 1 -3.2547 -7.7315 0.1643 40 1 -2.4065 -11.2428 0.4050 41 1 -3.4795 -12.8309 1.9429 42 1 -4.9469 -12.0513 3.7219 43 1 -6.4084 -7.9005 5.1244 44 1 -5.3846 -6.2279 3.6400 45 1 -3.8910 -6.9496 1.8218 46 1 -0.3973 -4.9359 1.6606 47 1 1.3397 -5.0118 2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755214247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:14 Heat of formation + Delta-G solvation = 47.707771 kcal Electronic energy + Delta-G solvation = -27896.805158 eV Core-core repulsion = 24045.106151 eV Total energy + Delta-G solvation = -3851.699007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25324 -40.16227 -38.49405 -37.30039 -34.57861 -34.33984 -33.19758 -31.57082 -30.82734 -30.76710 -28.17892 -26.62565 -25.54099 -24.48428 -23.83965 -23.46942 -22.02046 -21.38202 -20.44957 -19.12321 -18.39627 -17.40436 -17.33022 -17.20425 -16.99992 -15.96671 -15.35734 -14.93010 -14.86945 -14.66774 -14.51007 -14.32440 -14.18799 -13.83146 -13.67361 -13.49240 -13.30593 -13.19347 -12.84607 -12.43938 -12.31009 -12.15823 -11.91655 -11.85483 -11.65344 -11.48388 -11.05573 -10.84508 -10.72389 -10.51932 -10.37583 -10.11223 -10.00634 -9.85920 -9.72911 -9.62969 -9.05752 -8.98755 -8.86048 -8.42449 -6.91961 -5.77693 -3.05791 0.14039 0.61327 1.74029 2.46912 2.64110 3.07635 3.42416 3.47632 3.49342 3.89494 4.05691 4.13686 4.43177 4.53879 4.55358 4.56445 4.60800 4.72373 4.77484 4.80957 4.86638 4.96058 5.06329 5.08217 5.11128 5.13757 5.27127 5.56600 5.56893 5.67164 5.71920 5.77851 5.82296 5.84342 5.90494 5.97957 6.07929 6.10390 6.18399 6.20099 6.28021 6.29801 6.39462 6.59947 6.60734 6.76089 6.91276 7.37469 7.68296 7.68930 8.09243 8.41660 9.52679 10.11604 10.46016 11.45358 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002120 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.602947 B =13203.706985 C =14533.805697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.112 4.112 12 C -0.137 4.137 13 C 0.116 3.884 14 N -0.710 5.710 15 C 0.515 3.485 16 O -0.529 6.529 17 C -0.109 4.109 18 C -0.039 4.039 19 C -0.106 4.106 20 C -0.098 4.098 21 C -0.095 4.095 22 C 0.127 3.873 23 N -0.477 5.477 24 C 0.131 3.869 25 C -0.174 4.174 26 C -0.054 4.054 27 C -0.085 4.085 28 C -0.138 4.138 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.402 0.598 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.159 0.841 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.067 0.933 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 -24.016 0.940 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.131 4.131 12 C -0.176 4.176 13 C 0.011 3.989 14 N -0.361 5.361 15 C 0.301 3.699 16 O -0.405 6.405 17 C -0.149 4.149 18 C -0.041 4.041 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.114 4.114 22 C 0.005 3.995 23 N -0.185 5.185 24 C -0.042 4.042 25 C -0.194 4.194 26 C -0.080 4.080 27 C -0.087 4.087 28 C -0.177 4.177 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.236 0.764 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.157 0.843 45 H 0.153 0.847 46 H 0.086 0.914 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.864 -24.881 2.278 26.862 hybrid contribution 0.458 1.961 -1.003 2.250 sum -9.406 -22.920 1.276 24.807 Atomic orbital electron populations 1.69653 1.05111 1.25607 1.57990 1.24738 0.95537 0.97698 1.03153 0.86190 0.78667 0.83851 0.77501 1.21743 1.21772 1.20775 1.19245 0.91038 0.84267 1.42405 0.91237 1.42342 1.05813 1.00001 1.89411 1.20641 0.93029 0.85230 0.97680 1.22800 0.99076 0.94213 0.97027 1.23301 0.98891 0.96597 0.98818 1.21938 0.84439 0.95963 0.96590 1.45700 1.23436 1.45655 1.21298 1.20406 0.84959 0.78743 0.85826 1.90746 1.72455 1.57568 1.19710 1.20743 0.95126 1.00041 0.98969 1.19026 0.95955 0.93953 0.95132 1.20754 0.99444 0.92429 0.99824 1.20845 0.96237 1.00062 0.94601 1.20783 0.98792 0.93287 0.98526 1.18841 0.94668 0.94072 0.91878 1.68044 1.14646 1.16860 1.18925 1.22967 0.95983 0.88130 0.97107 1.21925 0.98996 1.01695 0.96792 1.21494 0.94968 0.94554 0.96975 1.18601 0.98857 0.94145 0.97072 1.23451 1.02400 0.94165 0.97677 0.93557 0.78368 0.96218 0.96410 0.89429 0.88731 0.91246 0.88458 0.76373 0.87323 0.87556 0.85561 0.85187 0.84800 0.82361 0.84297 0.84658 0.91402 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.36 5.60 -59.91 -0.34 -18.70 16 10 C 0.16 3.16 6.10 -4.04 -0.02 3.13 16 11 C -0.11 -1.67 3.64 -89.67 -0.33 -1.99 16 12 C -0.14 -1.58 7.38 -25.92 -0.19 -1.77 16 13 C 0.12 1.40 4.30 -67.12 -0.29 1.11 16 14 N -0.71 -7.23 5.26 -53.02 -0.28 -7.50 16 15 C 0.51 5.83 7.82 -10.99 -0.09 5.74 16 16 O -0.53 -8.33 15.65 5.56 0.09 -8.24 16 17 C -0.11 -0.87 5.25 -29.03 -0.15 -1.02 16 18 C -0.04 -0.40 4.38 -104.56 -0.46 -0.86 16 19 C -0.11 -0.95 9.58 -39.92 -0.38 -1.34 16 20 C -0.10 -0.84 9.94 -39.94 -0.40 -1.23 16 21 C -0.10 -0.98 9.98 -39.47 -0.39 -1.37 16 22 C 0.13 1.56 6.60 -84.86 -0.56 1.00 16 23 N -0.48 -5.86 10.34 -10.98 -0.11 -5.97 16 24 C 0.13 1.30 11.15 -17.46 -0.19 1.11 16 25 C -0.17 -1.67 10.03 -39.78 -0.40 -2.07 16 26 C -0.05 -0.58 9.37 -39.22 -0.37 -0.94 16 27 C -0.08 -0.99 5.74 -106.80 -0.61 -1.61 16 28 C -0.14 -2.00 7.45 -25.78 -0.19 -2.19 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 31 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.28 7.50 -51.93 -0.39 0.89 16 37 H 0.40 3.13 8.70 -40.82 -0.36 2.77 16 38 H 0.11 0.56 8.04 -51.93 -0.42 0.14 16 39 H 0.11 0.67 6.71 -51.93 -0.35 0.33 16 40 H 0.13 0.83 8.05 -52.49 -0.42 0.41 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.14 1.24 6.56 -52.48 -0.34 0.90 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -35.85 393.02 -11.05 -46.90 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.76 Total: 9.34 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -5.27 Total: -11.67 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.00 Total: -59.64 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.85 -11.05 -46.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755214247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.610 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds