Wall clock time and date at job start Tue Mar 31 2020 23:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99731 * 2 1 4 4 H 1.48499 * 109.47338 * 270.00255 * 3 2 1 5 5 H 1.48506 * 109.46896 * 29.99688 * 3 2 1 6 6 H 1.48496 * 109.47169 * 149.99714 * 3 2 1 7 7 C 1.38809 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00270 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47498 * 180.02562 * 10 9 7 12 12 C 1.53773 * 113.61532 * 174.99668 * 11 10 9 13 13 C 1.53777 * 87.08318 * 139.98251 * 12 11 10 14 14 N 1.46503 * 113.61730 * 89.11530 * 13 12 11 15 15 C 1.34771 * 120.00278 * 156.53142 * 14 13 12 16 16 O 1.21277 * 120.00045 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99942 * 180.02562 * 15 14 13 18 18 C 1.50701 * 109.46975 * 179.97438 * 17 15 14 19 19 C 1.36170 * 120.19467 * 264.99895 * 18 17 15 20 20 C 1.39317 * 120.87133 * 179.74718 * 19 18 17 21 21 C 1.36112 * 121.06505 * 0.25834 * 20 19 18 22 22 C 1.40558 * 119.74663 * 359.97438 * 21 20 19 23 23 N 1.33679 * 121.07060 * 180.02562 * 22 21 20 24 24 C 1.31090 * 121.31973 * 180.02562 * 23 22 21 25 25 C 1.39334 * 121.74870 * 359.95057 * 24 23 22 26 26 C 1.36572 * 119.94037 * 0.02712 * 25 24 23 27 27 C 1.40390 * 120.19237 * 85.25192 * 18 17 15 28 28 C 1.53777 * 87.17060 * 334.52681 * 13 12 11 29 29 H 0.96996 * 120.00640 * 0.02562 * 1 2 3 30 30 H 0.97007 * 120.00172 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47146 * 59.99980 * 10 9 7 32 32 H 1.09004 * 109.47131 * 300.00239 * 10 9 7 33 33 H 1.09006 * 112.84495 * 43.80339 * 11 10 9 34 34 H 1.09002 * 113.61552 * 25.43208 * 12 11 10 35 35 H 1.09001 * 113.61877 * 254.53444 * 12 11 10 36 36 H 1.08997 * 113.62146 * 219.93671 * 13 12 11 37 37 H 0.97003 * 119.99115 * 336.53553 * 14 13 12 38 38 H 1.09002 * 109.47291 * 60.00360 * 17 15 14 39 39 H 1.08996 * 109.47260 * 299.99824 * 17 15 14 40 40 H 1.08002 * 119.56720 * 0.03107 * 19 18 17 41 41 H 1.08001 * 119.47199 * 180.28451 * 20 19 18 42 42 H 1.08002 * 120.12248 * 180.02562 * 21 20 19 43 43 H 1.07993 * 119.12257 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.02677 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.92151 * 179.97438 * 26 25 24 46 46 H 1.09005 * 113.61705 * 140.02157 * 28 13 12 47 47 H 1.09004 * 113.61816 * 270.92376 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 6 1.7308 -6.1999 -0.1241 13 6 0.7050 -6.7001 0.9065 14 7 -0.5382 -7.1908 0.3066 15 6 -1.3109 -8.0669 0.9788 16 8 -0.9774 -8.4487 2.0805 17 6 -2.5895 -8.5721 0.3613 18 6 -3.2600 -9.5324 1.3096 19 6 -3.0539 -10.8728 1.1863 20 6 -3.6624 -11.7728 2.0584 21 6 -4.4834 -11.3401 3.0541 22 6 -4.7247 -9.9643 3.2106 23 7 -5.5258 -9.5102 4.1796 24 6 -5.7547 -8.2282 4.3297 25 6 -5.1765 -7.2772 3.4914 26 6 -4.3473 -7.6732 2.4811 27 6 -4.1050 -9.0507 2.3220 28 6 0.6159 -5.2493 1.4086 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6849 -3.7144 0.8894 32 1 2.6850 -3.7144 -0.8905 33 1 0.2383 -4.6702 -0.6968 34 1 2.7590 -6.2219 0.2371 35 1 1.6174 -6.6536 -1.1087 36 1 1.1228 -7.3907 1.6389 37 1 -0.8051 -6.8852 -0.5745 38 1 -2.3637 -9.0840 -0.5742 39 1 -3.2547 -7.7315 0.1643 40 1 -2.4065 -11.2428 0.4050 41 1 -3.4795 -12.8309 1.9429 42 1 -4.9469 -12.0513 3.7219 43 1 -6.4084 -7.9005 5.1244 44 1 -5.3846 -6.2279 3.6400 45 1 -3.8910 -6.9496 1.8218 46 1 -0.3973 -4.9359 1.6606 47 1 1.3397 -5.0118 2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755214247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:13 Heat of formation + Delta-G solvation = 24.476302 kcal Electronic energy + Delta-G solvation = -27897.812550 eV Core-core repulsion = 24045.106151 eV Total energy + Delta-G solvation = -3852.706399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00040 -41.12547 -39.52950 -38.04691 -36.33565 -35.08976 -34.40804 -32.85995 -32.17526 -31.48306 -29.12283 -28.06474 -26.62325 -25.32598 -25.11306 -24.56137 -23.20680 -22.55672 -21.24624 -20.29151 -19.10537 -19.04166 -18.19864 -18.05720 -17.92396 -16.97701 -16.67733 -16.21063 -15.82150 -15.69062 -15.53460 -15.36058 -15.17568 -15.09987 -14.76434 -14.57592 -14.46583 -14.15568 -13.87934 -13.65784 -13.40456 -13.13297 -13.01257 -12.84986 -12.67744 -12.63486 -12.52442 -12.18409 -12.14854 -11.93035 -11.73773 -11.50352 -11.34589 -11.14621 -10.94441 -10.84735 -10.50802 -10.01717 -9.71805 -9.15590 -8.97686 -7.95447 -5.23341 -0.58860 -0.12463 0.97606 1.46892 1.48349 1.56782 1.61515 1.92938 2.26439 2.55849 3.13119 3.36718 3.37606 3.45275 3.60568 3.60892 3.79778 3.83207 3.87125 3.92644 3.95000 4.00346 4.11506 4.24689 4.32066 4.34253 4.49414 4.55156 4.58333 4.62066 4.77654 4.85310 4.85734 4.91667 4.93114 4.99399 5.04071 5.07372 5.14301 5.16173 5.28401 5.38308 5.41161 5.48443 5.49564 5.59956 5.70023 5.92799 6.27750 6.57454 6.91311 7.27044 7.33768 8.11813 8.34211 9.28148 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002120 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.602947 B =13203.706985 C =14533.805697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.745 5.745 10 C 0.158 3.842 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.128 3.872 14 N -0.700 5.700 15 C 0.516 3.484 16 O -0.578 6.578 17 C -0.101 4.101 18 C -0.055 4.055 19 C -0.110 4.110 20 C -0.093 4.093 21 C -0.116 4.116 22 C 0.097 3.903 23 N -0.504 5.504 24 C 0.122 3.878 25 C -0.179 4.179 26 C -0.070 4.070 27 C -0.106 4.106 28 C -0.144 4.144 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.017 0.983 32 H 0.022 0.978 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.416 0.584 38 H 0.145 0.855 39 H 0.123 0.877 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.141 0.859 43 H 0.186 0.814 44 H 0.161 0.839 45 H 0.145 0.855 46 H 0.051 0.949 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.073 -25.005 -0.619 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.128 4.128 12 C -0.154 4.154 13 C 0.022 3.978 14 N -0.351 5.351 15 C 0.304 3.696 16 O -0.457 6.457 17 C -0.141 4.141 18 C -0.056 4.056 19 C -0.128 4.128 20 C -0.112 4.112 21 C -0.135 4.135 22 C -0.024 4.024 23 N -0.213 5.213 24 C -0.050 4.050 25 C -0.199 4.199 26 C -0.095 4.095 27 C -0.108 4.108 28 C -0.183 4.183 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.254 0.746 38 H 0.163 0.837 39 H 0.141 0.859 40 H 0.172 0.828 41 H 0.178 0.822 42 H 0.159 0.841 43 H 0.203 0.797 44 H 0.179 0.821 45 H 0.163 0.837 46 H 0.070 0.930 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.005 -25.894 0.683 27.424 hybrid contribution 0.226 2.225 -0.486 2.288 sum -8.780 -23.670 0.196 25.246 Atomic orbital electron populations 1.69802 1.06543 1.26034 1.59652 1.25558 0.96436 1.01077 1.03858 0.85157 0.77674 0.79546 0.77502 1.21233 1.22230 1.19593 1.19651 0.91489 0.85574 1.40997 0.90818 1.42570 1.05604 1.01235 1.89286 1.20839 0.93875 0.84683 0.97385 1.22724 0.98542 0.94183 0.97305 1.23206 0.98777 0.93448 0.99978 1.21698 0.85434 0.94050 0.96636 1.45620 1.22667 1.45109 1.21754 1.20968 0.85556 0.78009 0.85099 1.90733 1.73719 1.59327 1.21911 1.20798 0.93235 1.00542 0.99479 1.19324 0.95978 0.95030 0.95288 1.21174 0.99215 0.92136 1.00268 1.21235 0.94830 1.01690 0.93461 1.21024 0.99912 0.92852 0.99683 1.19251 0.95434 0.95223 0.92495 1.68055 1.15560 1.18007 1.19647 1.23484 0.96087 0.87723 0.97733 1.22224 0.98513 1.02803 0.96344 1.21751 0.95454 0.94660 0.97680 1.18877 0.99585 0.94554 0.97767 1.23459 1.01146 0.96376 0.97350 0.94022 0.79488 0.96516 0.95998 0.89224 0.87961 0.88612 0.89345 0.74631 0.83690 0.85892 0.82822 0.82173 0.84144 0.79709 0.82092 0.83690 0.92993 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -37.41 5.60 -343.46 -1.92 -39.34 16 10 C 0.16 6.05 6.10 86.38 0.53 6.58 16 11 C -0.11 -3.08 3.64 -10.18 -0.04 -3.11 16 12 C -0.12 -2.33 7.38 31.12 0.23 -2.10 16 13 C 0.13 2.87 4.30 45.51 0.20 3.07 16 14 N -0.70 -12.68 5.26 -440.06 -2.32 -15.00 16 15 C 0.52 10.80 7.82 87.66 0.69 11.49 16 16 O -0.58 -17.92 15.65 -3.02 -0.05 -17.97 16 17 C -0.10 -1.37 5.25 29.10 0.15 -1.22 16 18 C -0.05 -1.05 4.38 -19.82 -0.09 -1.13 16 19 C -0.11 -1.76 9.58 22.05 0.21 -1.54 16 20 C -0.09 -1.46 9.94 22.03 0.22 -1.24 16 21 C -0.12 -2.39 9.98 22.34 0.22 -2.17 16 22 C 0.10 2.44 6.60 40.29 0.27 2.71 16 23 N -0.50 -12.82 10.34 -188.64 -1.95 -14.77 16 24 C 0.12 2.47 11.15 85.07 0.95 3.42 16 25 C -0.18 -3.44 10.03 22.14 0.22 -3.21 16 26 C -0.07 -1.49 9.37 22.50 0.21 -1.28 16 27 C -0.11 -2.49 5.74 -21.28 -0.12 -2.61 16 28 C -0.14 -4.13 7.45 31.21 0.23 -3.90 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.37 19.88 7.67 -92.70 -0.71 19.17 16 31 H 0.02 0.66 7.85 -2.39 -0.02 0.64 16 32 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.10 1.96 8.10 -2.39 -0.02 1.94 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 2.23 7.50 -2.39 -0.02 2.22 16 37 H 0.42 5.18 8.70 -92.71 -0.81 4.37 16 38 H 0.15 0.89 8.04 -2.39 -0.02 0.87 16 39 H 0.12 1.26 6.71 -2.39 -0.02 1.24 16 40 H 0.15 1.50 8.05 -2.91 -0.02 1.48 16 41 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 44 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 45 H 0.15 2.62 6.56 -2.91 -0.02 2.60 16 46 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.08 2.42 7.90 -2.38 -0.02 2.40 16 Total: -1.00 -79.44 393.02 0.94 -78.50 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.51 Total: 32.39 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.38 Total: -13.08 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.91 Total: -127.90 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.97 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -79.44 0.94 -78.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755214247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.972 kcal (2) G-P(sol) polarization free energy of solvation -79.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds