Wall clock time and date at job start Tue Mar 31 2020 22:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48501 * 109.47103 * 269.99608 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99912 * 3 2 1 6 6 H 1.48498 * 109.46747 * 149.99906 * 3 2 1 7 7 C 1.38650 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00048 * 0.02562 * 7 2 1 9 9 O 1.34830 * 120.00326 * 180.02562 * 7 2 1 10 10 C 1.35748 * 117.00101 * 185.05731 * 9 7 2 11 11 C 1.38878 * 120.07147 * 354.46447 * 10 9 7 12 12 C 1.38094 * 119.92859 * 179.72501 * 11 10 9 13 13 C 1.38302 * 120.07461 * 0.27306 * 12 11 10 14 14 C 1.50696 * 119.93469 * 180.02562 * 13 12 11 15 15 N 1.46903 * 109.47151 * 89.99796 * 14 13 12 16 16 C 1.46955 * 110.99825 * 293.79996 * 15 14 13 17 17 C 1.53055 * 109.36294 * 176.81474 * 16 15 14 18 18 N 1.46951 * 109.36579 * 58.39714 * 17 16 15 19 19 C 1.38999 * 111.00085 * 176.81398 * 18 17 16 20 20 C 1.39147 * 119.70392 * 303.80417 * 19 18 17 21 21 C 1.38304 * 119.09290 * 180.02562 * 20 19 18 22 22 C 1.38876 * 118.50764 * 359.97438 * 21 20 19 23 23 C 1.38017 * 119.33119 * 359.97438 * 22 21 20 24 24 N 1.31978 * 120.85668 * 359.73229 * 23 22 21 25 25 C 1.46955 * 110.88383 * 300.68055 * 18 17 16 26 26 C 1.46953 * 110.99911 * 170.00399 * 15 14 13 27 27 C 1.38300 * 120.13444 * 0.02562 * 13 12 11 28 28 C 1.38104 * 120.06842 * 359.97438 * 27 13 12 29 29 H 0.96992 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03039 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.96229 * 180.29772 * 12 11 10 32 32 H 1.08993 * 109.47252 * 210.00252 * 14 13 12 33 33 H 1.09004 * 109.47067 * 330.00237 * 14 13 12 34 34 H 1.09006 * 109.49296 * 296.77835 * 16 15 14 35 35 H 1.08999 * 109.49262 * 56.84546 * 16 15 14 36 36 H 1.09001 * 109.48560 * 298.43187 * 17 16 15 37 37 H 1.08998 * 109.50701 * 178.37967 * 17 16 15 38 38 H 1.07994 * 120.45336 * 359.97438 * 20 19 18 39 39 H 1.08003 * 120.74382 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.33217 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.57262 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.48915 * 299.35347 * 25 18 17 43 43 H 1.09001 * 109.48626 * 179.28305 * 25 18 17 44 44 H 1.09004 * 109.48948 * 303.15497 * 26 15 14 45 45 H 1.09001 * 109.49312 * 63.21997 * 26 15 14 46 46 H 1.07996 * 119.96721 * 179.97438 * 27 13 12 47 47 H 1.08003 * 120.03314 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1051 11 6 3.2236 -3.5744 -0.0921 12 6 3.8531 -4.7982 -0.2060 13 6 5.2294 -4.8611 -0.3271 14 6 5.9130 -6.1982 -0.4517 15 7 6.0170 -6.5647 -1.8705 16 6 4.6881 -6.7994 -2.4525 17 6 4.8341 -7.0999 -3.9461 18 7 5.6991 -8.2744 -4.1246 19 6 5.7974 -8.6212 -5.4670 20 6 4.6428 -8.8843 -6.1976 21 6 4.7554 -9.2287 -7.5323 22 6 6.0235 -9.2984 -8.0942 23 6 7.1261 -9.0236 -7.3109 24 7 6.9884 -8.6917 -6.0409 25 6 7.0279 -8.0397 -3.5427 26 6 6.8818 -7.7393 -2.0490 27 6 5.9795 -3.6992 -0.3341 28 6 5.3559 -2.4722 -0.2206 29 1 -0.4850 0.8400 -0.0004 30 1 2.1489 -3.5260 0.0028 31 1 3.2700 -5.7073 -0.2008 32 1 6.9111 -6.1378 -0.0180 33 1 5.3322 -6.9540 0.0771 34 1 4.2179 -7.6479 -1.9552 35 1 4.0705 -5.9113 -2.3189 36 1 5.2793 -6.2408 -4.4480 37 1 3.8525 -7.3027 -4.3742 38 1 3.6720 -8.8211 -5.7286 39 1 3.8767 -9.4380 -8.1245 40 1 6.1455 -9.5642 -9.1339 41 1 8.1141 -9.0770 -7.7437 42 1 7.4980 -7.1914 -4.0400 43 1 7.6454 -8.9279 -3.6763 44 1 7.8636 -7.5364 -1.6212 45 1 6.4366 -8.5984 -1.5471 46 1 7.0541 -3.7514 -0.4284 47 1 5.9423 -1.5653 -0.2257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077253164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:18 Heat of formation + Delta-G solvation = 64.799178 kcal Electronic energy + Delta-G solvation = -28227.595579 eV Core-core repulsion = 24376.637711 eV Total energy + Delta-G solvation = -3850.957868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93981 -39.46114 -38.74355 -36.98022 -35.32613 -32.80182 -32.43730 -31.35824 -30.96154 -30.23213 -29.61568 -26.97422 -25.37202 -24.59556 -23.78482 -22.79610 -22.32210 -22.01670 -20.34085 -19.95657 -17.96720 -17.87741 -17.26372 -16.68965 -16.20269 -15.63849 -15.26703 -15.19781 -15.00912 -14.74033 -14.55151 -14.32483 -14.02576 -13.88459 -13.76802 -13.54153 -13.40346 -13.15046 -12.76360 -12.53688 -12.30856 -12.20049 -12.10692 -11.69979 -11.48861 -11.34498 -11.32097 -11.05479 -10.73965 -10.67726 -10.56965 -10.25611 -10.15666 -10.01505 -9.70623 -9.39799 -8.88205 -8.38512 -8.30903 -8.22214 -7.32287 -6.43123 -4.09720 0.88012 1.03437 2.11613 2.17092 3.21015 3.21718 3.24936 3.39535 3.62819 3.90052 4.18754 4.22594 4.54221 4.58256 4.68530 4.82038 4.85491 4.86453 4.90519 4.98653 5.06633 5.09796 5.15126 5.24735 5.33728 5.37849 5.43760 5.45527 5.64448 5.68672 5.72865 5.73181 5.76532 5.80762 5.89574 5.93374 5.96690 6.12025 6.22819 6.33113 6.47413 6.56715 6.77741 6.90033 6.96041 7.05269 7.13762 7.25222 7.31103 7.60568 7.75761 7.78571 8.02591 8.92307 9.55010 10.64516 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.002235 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.112211 B =12525.173443 C =13464.309722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.161 3.839 11 C -0.221 4.221 12 C -0.068 4.068 13 C -0.171 4.171 14 C 0.113 3.887 15 N -0.534 5.534 16 C 0.055 3.945 17 C 0.063 3.937 18 N -0.480 5.480 19 C 0.317 3.683 20 C -0.187 4.187 21 C -0.054 4.054 22 C -0.207 4.207 23 C 0.125 3.875 24 N -0.521 5.521 25 C 0.072 3.928 26 C 0.052 3.948 27 C -0.054 4.054 28 C -0.194 4.194 29 H 0.279 0.721 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.113 0.887 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.318 -19.078 -11.312 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.109 3.891 11 C -0.240 4.240 12 C -0.087 4.087 13 C -0.172 4.172 14 C -0.014 4.014 15 N -0.259 5.259 16 C -0.073 4.073 17 C -0.062 4.062 18 N -0.198 5.198 19 C 0.085 3.915 20 C -0.210 4.210 21 C -0.080 4.080 22 C -0.228 4.228 23 C -0.033 4.033 24 N -0.236 5.236 25 C -0.055 4.055 26 C -0.076 4.076 27 C -0.073 4.073 28 C -0.213 4.213 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.171 0.829 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.131 0.869 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.922 -18.490 -10.693 24.964 hybrid contribution -0.767 0.286 -0.527 0.974 sum 12.155 -18.204 -11.220 24.597 Atomic orbital electron populations 1.69644 1.05563 1.28496 1.48073 1.24468 0.95027 0.98837 0.95680 0.86184 0.80336 0.81438 0.78972 1.19884 1.20789 1.18358 1.20759 0.76903 0.96601 1.52206 0.87645 1.83575 1.22602 1.25809 1.80285 1.19142 0.91722 0.85466 0.92773 1.21232 1.01051 0.91830 1.09927 1.20651 0.93509 0.96587 0.97950 1.19131 0.93340 0.93783 1.10971 1.20797 0.99807 0.93831 0.86928 1.62227 1.12110 1.34883 1.16712 1.22242 0.91218 1.01308 0.92573 1.22372 0.96657 0.89412 0.97794 1.59336 1.15137 1.35594 1.09684 1.19904 0.89139 0.93696 0.88792 1.21603 0.99005 1.05394 0.95010 1.21455 0.97916 0.94279 0.94360 1.21980 0.93542 1.05679 1.01612 1.22529 0.99055 0.93053 0.88642 1.67639 1.25948 1.17172 1.12792 1.22034 0.87980 1.01892 0.93551 1.22252 0.98051 0.91762 0.95553 1.20454 0.98452 0.91082 0.97305 1.20218 0.91916 0.97926 1.11254 0.91053 0.85039 0.87627 0.90611 0.94671 0.94044 0.88468 0.92531 0.89559 0.84624 0.84764 0.85005 0.82851 0.92244 0.89563 0.89878 0.94252 0.86914 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.96 55.48 0.77 -24.50 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.62 28.62 -169.99 -4.86 16.75 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.39 -10.87 9.95 30.88 0.31 -10.57 16 8 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16 9 O -0.22 -5.71 8.59 0.05 0.00 -5.71 16 10 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.22 -4.64 9.17 -39.40 -0.36 -5.00 16 12 C -0.07 -1.18 7.91 -39.61 -0.31 -1.49 16 13 C -0.17 -2.71 4.90 -104.58 -0.51 -3.22 16 14 C 0.11 1.44 5.11 -4.98 -0.03 1.41 16 15 N -0.53 -6.64 4.70 -235.91 -1.11 -7.75 16 16 C 0.05 0.67 5.25 -3.77 -0.02 0.65 16 17 C 0.06 0.72 5.37 -3.77 -0.02 0.70 16 18 N -0.48 -5.50 4.73 -173.04 -0.82 -6.31 16 19 C 0.32 3.61 6.40 -155.03 -0.99 2.61 16 20 C -0.19 -1.79 9.22 -39.22 -0.36 -2.15 16 21 C -0.05 -0.42 10.17 -39.32 -0.40 -0.82 16 22 C -0.21 -1.55 10.10 -39.43 -0.40 -1.95 16 23 C 0.12 1.10 11.17 -17.57 -0.20 0.91 16 24 N -0.52 -5.95 8.71 -12.44 -0.11 -6.05 16 25 C 0.07 0.81 4.79 -3.77 -0.02 0.79 16 26 C 0.05 0.55 5.61 -3.77 -0.02 0.53 16 27 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 28 C -0.19 -3.79 9.99 -39.39 -0.39 -4.19 16 29 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.13 2.91 5.64 -52.49 -0.30 2.62 16 31 H 0.11 1.58 7.99 -52.48 -0.42 1.16 16 32 H 0.08 0.88 7.97 -51.93 -0.41 0.46 16 33 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.34 5.95 -51.93 -0.31 1.03 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.85 6.79 -51.93 -0.35 0.50 16 38 H 0.14 1.13 7.17 -52.49 -0.38 0.75 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.06 0.74 8.04 -51.93 -0.42 0.33 16 43 H 0.09 0.94 7.83 -51.93 -0.41 0.53 16 44 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -30.46 379.53 -11.50 -41.97 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.63 Total: 3.89 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -4.47 Total: -18.00 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -1.26 Total: -44.62 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: 0.00 Total: -5.71 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.86 Total: 16.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.46 -11.50 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077253164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.767 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds