Wall clock time and date at job start Tue Mar 31 2020 22:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48501 * 109.47103 * 269.99608 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99912 * 3 2 1 6 6 H 1.48498 * 109.46747 * 149.99906 * 3 2 1 7 7 C 1.38650 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00048 * 0.02562 * 7 2 1 9 9 O 1.34830 * 120.00326 * 180.02562 * 7 2 1 10 10 C 1.35748 * 117.00101 * 185.05731 * 9 7 2 11 11 C 1.38878 * 120.07147 * 354.46447 * 10 9 7 12 12 C 1.38094 * 119.92859 * 179.72501 * 11 10 9 13 13 C 1.38302 * 120.07461 * 0.27306 * 12 11 10 14 14 C 1.50696 * 119.93469 * 180.02562 * 13 12 11 15 15 N 1.46903 * 109.47151 * 89.99796 * 14 13 12 16 16 C 1.46955 * 110.99825 * 293.79996 * 15 14 13 17 17 C 1.53055 * 109.36294 * 176.81474 * 16 15 14 18 18 N 1.46951 * 109.36579 * 58.39714 * 17 16 15 19 19 C 1.38999 * 111.00085 * 176.81398 * 18 17 16 20 20 C 1.39147 * 119.70392 * 303.80417 * 19 18 17 21 21 C 1.38304 * 119.09290 * 180.02562 * 20 19 18 22 22 C 1.38876 * 118.50764 * 359.97438 * 21 20 19 23 23 C 1.38017 * 119.33119 * 359.97438 * 22 21 20 24 24 N 1.31978 * 120.85668 * 359.73229 * 23 22 21 25 25 C 1.46955 * 110.88383 * 300.68055 * 18 17 16 26 26 C 1.46953 * 110.99911 * 170.00399 * 15 14 13 27 27 C 1.38300 * 120.13444 * 0.02562 * 13 12 11 28 28 C 1.38104 * 120.06842 * 359.97438 * 27 13 12 29 29 H 0.96992 * 120.00121 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03039 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.96229 * 180.29772 * 12 11 10 32 32 H 1.08993 * 109.47252 * 210.00252 * 14 13 12 33 33 H 1.09004 * 109.47067 * 330.00237 * 14 13 12 34 34 H 1.09006 * 109.49296 * 296.77835 * 16 15 14 35 35 H 1.08999 * 109.49262 * 56.84546 * 16 15 14 36 36 H 1.09001 * 109.48560 * 298.43187 * 17 16 15 37 37 H 1.08998 * 109.50701 * 178.37967 * 17 16 15 38 38 H 1.07994 * 120.45336 * 359.97438 * 20 19 18 39 39 H 1.08003 * 120.74382 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.33217 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.57262 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.48915 * 299.35347 * 25 18 17 43 43 H 1.09001 * 109.48626 * 179.28305 * 25 18 17 44 44 H 1.09004 * 109.48948 * 303.15497 * 26 15 14 45 45 H 1.09001 * 109.49312 * 63.21997 * 26 15 14 46 46 H 1.07996 * 119.96721 * 179.97438 * 27 13 12 47 47 H 1.08003 * 120.03314 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1051 11 6 3.2236 -3.5744 -0.0921 12 6 3.8531 -4.7982 -0.2060 13 6 5.2294 -4.8611 -0.3271 14 6 5.9130 -6.1982 -0.4517 15 7 6.0170 -6.5647 -1.8705 16 6 4.6881 -6.7994 -2.4525 17 6 4.8341 -7.0999 -3.9461 18 7 5.6991 -8.2744 -4.1246 19 6 5.7974 -8.6212 -5.4670 20 6 4.6428 -8.8843 -6.1976 21 6 4.7554 -9.2287 -7.5323 22 6 6.0235 -9.2984 -8.0942 23 6 7.1261 -9.0236 -7.3109 24 7 6.9884 -8.6917 -6.0409 25 6 7.0279 -8.0397 -3.5427 26 6 6.8818 -7.7393 -2.0490 27 6 5.9795 -3.6992 -0.3341 28 6 5.3559 -2.4722 -0.2206 29 1 -0.4850 0.8400 -0.0004 30 1 2.1489 -3.5260 0.0028 31 1 3.2700 -5.7073 -0.2008 32 1 6.9111 -6.1378 -0.0180 33 1 5.3322 -6.9540 0.0771 34 1 4.2179 -7.6479 -1.9552 35 1 4.0705 -5.9113 -2.3189 36 1 5.2793 -6.2408 -4.4480 37 1 3.8525 -7.3027 -4.3742 38 1 3.6720 -8.8211 -5.7286 39 1 3.8767 -9.4380 -8.1245 40 1 6.1455 -9.5642 -9.1339 41 1 8.1141 -9.0770 -7.7437 42 1 7.4980 -7.1914 -4.0400 43 1 7.6454 -8.9279 -3.6763 44 1 7.8636 -7.5364 -1.6212 45 1 6.4366 -8.5984 -1.5471 46 1 7.0541 -3.7514 -0.4284 47 1 5.9423 -1.5653 -0.2257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077253164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:17 Heat of formation + Delta-G solvation = 46.425552 kcal Electronic energy + Delta-G solvation = -28228.392319 eV Core-core repulsion = 24376.637711 eV Total energy + Delta-G solvation = -3851.754608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70407 -40.94152 -39.83988 -38.43230 -36.37541 -34.45571 -33.49352 -32.42740 -31.95799 -31.66198 -30.68896 -28.18227 -27.09590 -25.39940 -24.94025 -23.77619 -23.41679 -23.12441 -21.80782 -20.86756 -19.78715 -19.06934 -18.71335 -17.43057 -16.88260 -16.74066 -16.57874 -16.36127 -16.12456 -15.93656 -15.65269 -15.51513 -15.48434 -15.25594 -15.04253 -14.65967 -14.37504 -14.23261 -14.12570 -14.01768 -13.94810 -13.20220 -13.03539 -12.88816 -12.77102 -12.52959 -12.46761 -12.37274 -12.28411 -11.97828 -11.92119 -11.71577 -11.25871 -10.97118 -10.89611 -10.75122 -10.41432 -9.77009 -9.32710 -9.10024 -8.94624 -8.49879 -6.22029 0.19728 0.38301 0.58961 0.64011 1.31046 1.34963 1.51523 2.27907 2.45394 2.68313 2.92286 2.95008 3.13751 3.27940 3.50614 3.81728 3.88772 3.99750 4.05026 4.11243 4.19141 4.20151 4.22698 4.27425 4.31160 4.37905 4.42414 4.47642 4.57797 4.60567 4.74814 4.80139 4.82317 4.84163 4.87895 4.94580 5.01255 5.04528 5.10975 5.27798 5.32417 5.38327 5.57104 5.59462 5.65865 5.77238 5.81589 5.91918 6.03398 6.12848 6.20134 6.27803 6.84818 7.05253 7.60161 8.61753 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.002235 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.112211 B =12525.173443 C =13464.309722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.397 4.397 8 H 0.081 0.919 9 O -0.247 6.247 10 C 0.120 3.880 11 C -0.236 4.236 12 C -0.065 4.065 13 C -0.144 4.144 14 C 0.115 3.885 15 N -0.545 5.545 16 C 0.058 3.942 17 C 0.070 3.930 18 N -0.483 5.483 19 C 0.289 3.711 20 C -0.199 4.199 21 C -0.056 4.056 22 C -0.199 4.199 23 C 0.109 3.891 24 N -0.546 5.546 25 C 0.079 3.921 26 C 0.059 3.941 27 C -0.049 4.049 28 C -0.194 4.194 29 H 0.284 0.716 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.097 0.903 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.044 0.956 46 H 0.150 0.850 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.936 -21.085 -12.451 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.099 0.901 9 O -0.155 6.155 10 C 0.071 3.929 11 C -0.255 4.255 12 C -0.083 4.083 13 C -0.145 4.145 14 C -0.011 4.011 15 N -0.270 5.270 16 C -0.070 4.070 17 C -0.056 4.056 18 N -0.201 5.201 19 C 0.058 3.942 20 C -0.221 4.221 21 C -0.082 4.082 22 C -0.220 4.220 23 C -0.048 4.048 24 N -0.261 5.261 25 C -0.048 4.048 26 C -0.069 4.069 27 C -0.067 4.067 28 C -0.213 4.213 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.115 0.885 38 H 0.160 0.840 39 H 0.180 0.820 40 H 0.180 0.820 41 H 0.193 0.807 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.063 0.937 46 H 0.168 0.832 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.572 -20.545 -11.844 28.370 hybrid contribution -1.374 0.535 -0.321 1.509 sum 14.198 -20.010 -12.164 27.385 Atomic orbital electron populations 1.69727 1.06854 1.29546 1.50336 1.25269 0.95882 1.02111 0.95636 0.85232 0.78809 0.77534 0.79231 1.19167 1.19188 1.18762 1.20700 0.78132 0.96080 1.52449 0.90108 1.83517 1.21212 1.27565 1.83158 1.19684 0.93197 0.85071 0.94979 1.21228 1.00064 0.93167 1.11046 1.20893 0.94610 0.95917 0.96884 1.19602 0.92683 0.95568 1.06670 1.20833 1.00915 0.91814 0.87558 1.62165 1.12300 1.36247 1.16263 1.22164 0.91090 1.00609 0.93174 1.22271 0.97212 0.89011 0.97122 1.59408 1.15090 1.35206 1.10352 1.20091 0.89907 0.95186 0.89039 1.21808 0.98815 1.05574 0.95907 1.21858 0.99256 0.93221 0.93891 1.22359 0.92916 1.03844 1.02860 1.23029 1.00769 0.92903 0.88116 1.67601 1.26274 1.18025 1.14168 1.21936 0.87969 1.01102 0.93772 1.22266 0.98452 0.91052 0.95153 1.20894 1.00335 0.89948 0.95531 1.20520 0.90558 0.99799 1.10438 0.90612 0.87545 0.85204 0.88201 0.93430 0.93376 0.90339 0.94555 0.88458 0.83959 0.82028 0.81993 0.80667 0.94079 0.89473 0.88080 0.93739 0.83210 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 13.96 21.61 0.30 -55.14 16 2 C 0.01 0.54 5.49 84.83 0.47 1.00 16 3 Si 0.97 45.83 28.62 68.60 1.96 47.79 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.40 -23.54 9.95 67.92 0.68 -22.86 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 9 O -0.25 -13.52 8.59 -22.72 -0.20 -13.72 16 10 C 0.12 5.61 6.65 22.58 0.15 5.76 16 11 C -0.24 -10.26 9.17 22.39 0.21 -10.05 16 12 C -0.06 -2.16 7.91 22.25 0.18 -1.99 16 13 C -0.14 -4.17 4.90 -19.84 -0.10 -4.27 16 14 C 0.12 2.48 5.11 85.56 0.44 2.91 16 15 N -0.54 -11.98 4.70 -900.27 -4.23 -16.21 16 16 C 0.06 1.32 5.25 86.31 0.45 1.77 16 17 C 0.07 1.54 5.37 86.31 0.46 2.01 16 18 N -0.48 -10.56 4.73 -701.38 -3.32 -13.88 16 19 C 0.29 6.33 6.40 133.07 0.85 7.18 16 20 C -0.20 -3.54 9.22 22.50 0.21 -3.33 16 21 C -0.06 -0.75 10.17 22.44 0.23 -0.52 16 22 C -0.20 -2.44 10.10 22.37 0.23 -2.22 16 23 C 0.11 1.73 11.17 84.62 0.95 2.67 16 24 N -0.55 -11.94 8.71 -193.26 -1.68 -13.62 16 25 C 0.08 1.65 4.79 86.31 0.41 2.07 16 26 C 0.06 1.07 5.61 86.31 0.48 1.55 16 27 C -0.05 -1.48 9.69 22.25 0.22 -1.27 16 28 C -0.19 -7.43 9.99 22.39 0.22 -7.20 16 29 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16 31 H 0.13 3.69 7.99 -2.91 -0.02 3.67 16 32 H 0.10 1.76 7.97 -2.39 -0.02 1.74 16 33 H 0.05 0.96 8.06 -2.38 -0.02 0.94 16 34 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.08 2.08 5.95 -2.39 -0.01 2.07 16 36 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.87 6.79 -2.39 -0.02 1.85 16 38 H 0.14 2.20 7.17 -2.91 -0.02 2.18 16 39 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 42 H 0.04 1.00 8.04 -2.39 -0.02 0.98 16 43 H 0.09 1.79 7.83 -2.39 -0.02 1.77 16 44 H 0.10 1.50 8.07 -2.38 -0.02 1.48 16 45 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 47 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -70.17 379.53 0.53 -69.63 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.97 Total: 21.92 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 6.73 Total: -26.78 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -8.93 Total: -98.84 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.20 Total: -13.72 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.96 Total: 47.79 kcal Total: -70.17 0.53 -69.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077253164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.058 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds