Wall clock time and date at job start Tue Mar 31 2020 22:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48499 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47142 * 299.99961 * 3 2 1 6 6 H 1.48496 * 109.46938 * 59.99685 * 3 2 1 7 7 C 1.38814 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99923 * 187.60351 * 7 2 1 9 9 N 1.36935 * 120.00037 * 7.59634 * 7 2 1 10 10 C 1.46964 * 120.59503 * 213.87425 * 9 7 2 11 11 C 1.53368 * 108.63228 * 235.25033 * 10 9 7 12 12 N 1.46962 * 108.63685 * 310.57504 * 11 10 9 13 13 C 1.34775 * 120.59452 * 235.20413 * 12 11 10 14 14 O 1.21695 * 120.00283 * 1.80107 * 13 12 11 15 15 C 1.46674 * 120.00201 * 181.79686 * 13 12 11 16 16 C 1.37870 * 126.23113 * 27.11905 * 15 13 12 17 17 C 1.39837 * 107.08542 * 180.02562 * 16 15 13 18 18 C 1.35450 * 107.86545 * 359.75907 * 17 16 15 19 19 N 1.35531 * 108.87002 * 0.39254 * 18 17 16 20 20 C 1.46499 * 125.67730 * 179.86203 * 19 18 17 21 21 C 1.50691 * 109.47476 * 264.79783 * 20 19 18 22 22 C 1.38241 * 119.99969 * 84.74988 * 21 20 19 23 23 C 1.38238 * 120.00122 * 180.02562 * 22 21 20 24 24 C 1.38233 * 119.99695 * 359.95269 * 23 22 21 25 25 C 1.38238 * 120.00284 * 0.28059 * 24 23 22 26 26 C 1.38229 * 119.99580 * 359.50864 * 25 24 23 27 27 C 1.46963 * 118.81335 * 55.47998 * 12 11 10 28 28 C 1.46962 * 120.59324 * 33.89883 * 9 7 2 29 29 H 0.96994 * 120.00197 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.60981 * 115.50534 * 10 9 7 31 31 H 1.09002 * 109.61152 * 354.99197 * 10 9 7 32 32 H 1.09007 * 109.60808 * 190.82783 * 11 10 9 33 33 H 1.09001 * 109.61381 * 70.32244 * 11 10 9 34 34 H 1.07998 * 126.46181 * 0.03573 * 16 15 13 35 35 H 1.08004 * 126.06630 * 180.02562 * 17 16 15 36 36 H 1.07994 * 125.56395 * 180.24165 * 18 17 16 37 37 H 1.09003 * 109.46806 * 144.79591 * 20 19 18 38 38 H 1.09002 * 109.46884 * 24.80387 * 20 19 18 39 39 H 1.07999 * 119.99459 * 359.97438 * 22 21 20 40 40 H 1.07999 * 120.00000 * 179.97438 * 23 22 21 41 41 H 1.08007 * 119.99934 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.99656 * 179.72380 * 25 24 23 43 43 H 1.08013 * 119.99701 * 180.25533 * 26 25 24 44 44 H 1.09003 * 109.60864 * 64.26189 * 27 12 11 45 45 H 1.08991 * 109.61070 * 184.77354 * 27 12 11 46 46 H 1.09003 * 109.61087 * 244.49240 * 28 9 7 47 47 H 1.09010 * 109.61061 * 5.00792 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0832 -1.2063 0.1232 9 7 1.3347 -2.3828 -0.1578 10 6 1.7905 -3.6021 0.5243 11 6 2.0031 -4.7003 -0.5250 12 7 0.8095 -4.7709 -1.3794 13 6 0.1451 -5.9331 -1.5350 14 8 0.5129 -6.9287 -0.9397 15 6 -1.0214 -5.9980 -2.4218 16 6 -1.2583 -5.1944 -3.5168 17 6 -2.4787 -5.5987 -4.0668 18 6 -2.9529 -6.6231 -3.3181 19 7 -2.0793 -6.8719 -2.3122 20 6 -2.2324 -7.9033 -1.2831 21 6 -2.8585 -7.2973 -0.0537 22 6 -4.2332 -7.1832 0.0372 23 6 -4.8076 -6.6268 1.1648 24 6 -4.0073 -6.1854 2.2019 25 6 -2.6324 -6.2950 2.1090 26 6 -2.0583 -6.8554 0.9833 27 6 0.3569 -3.5529 -2.0660 28 6 0.1410 -2.4534 -1.0123 29 1 -0.4850 0.8400 -0.0004 30 1 1.0361 -3.9233 1.2424 31 1 2.7295 -3.4030 1.0409 32 1 2.1536 -5.6581 -0.0268 33 1 2.8751 -4.4608 -1.1337 34 1 -0.6213 -4.4021 -3.8813 35 1 -2.9562 -5.1729 -4.9369 36 1 -3.8774 -7.1532 -3.4926 37 1 -1.2539 -8.3111 -1.0292 38 1 -2.8717 -8.7012 -1.6608 39 1 -4.8583 -7.5280 -0.7732 40 1 -5.8815 -6.5373 1.2356 41 1 -4.4560 -5.7510 3.0831 42 1 -2.0071 -5.9461 2.9174 43 1 -0.9842 -6.9449 0.9125 44 1 1.1144 -3.2335 -2.7818 45 1 -0.5800 -3.7527 -2.5858 46 1 -0.7309 -2.6929 -0.4036 47 1 -0.0094 -1.4956 -1.5105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152644848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:52 Heat of formation + Delta-G solvation = 90.801235 kcal Electronic energy + Delta-G solvation = -30219.628684 eV Core-core repulsion = 26369.798349 eV Total energy + Delta-G solvation = -3849.830334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43396 -39.19633 -38.89871 -36.69052 -34.25894 -33.53809 -31.58840 -30.92310 -30.48106 -30.17593 -28.91267 -26.85757 -26.07392 -23.97523 -22.92253 -22.61464 -21.93019 -21.52249 -20.48364 -19.77521 -18.76844 -17.37351 -16.80335 -16.38772 -15.76872 -15.51744 -15.38369 -15.01152 -14.91555 -14.72624 -14.13341 -13.72916 -13.59167 -13.51451 -13.40709 -13.26952 -13.18827 -12.83974 -12.75827 -12.51554 -12.36533 -12.19774 -11.89300 -11.44217 -11.21339 -11.00863 -10.99257 -10.84490 -10.67371 -10.46666 -10.19651 -9.98780 -9.82777 -9.47494 -8.93591 -8.91199 -8.59447 -8.52689 -8.28835 -7.95163 -6.60463 -5.83324 -3.36309 1.17922 1.39559 1.75856 2.76218 2.92082 3.33280 3.41257 3.42999 3.53096 3.67603 3.88197 4.44214 4.58869 4.62025 4.87514 4.96038 4.97156 5.08022 5.14390 5.35456 5.36882 5.40250 5.48290 5.54012 5.55341 5.64588 5.86161 5.90672 5.92230 5.98276 6.03064 6.16921 6.18500 6.22757 6.28895 6.39437 6.44157 6.48678 6.52035 6.55067 6.78053 6.88338 6.96228 7.00761 7.13363 7.29275 7.33387 7.55737 7.73359 7.92883 8.42218 8.55223 9.15659 9.75151 10.35329 11.23442 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.003779 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.225743 B = 7406.977354 C = 8119.002122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.133 3.867 11 C 0.097 3.903 12 N -0.578 5.578 13 C 0.583 3.417 14 O -0.570 6.570 15 C -0.032 4.032 16 C -0.154 4.154 17 C -0.206 4.206 18 C 0.006 3.994 19 N -0.405 5.405 20 C 0.139 3.861 21 C -0.115 4.115 22 C -0.103 4.103 23 C -0.127 4.127 24 C -0.110 4.110 25 C -0.118 4.118 26 C -0.089 4.089 27 C 0.047 3.953 28 C 0.162 3.838 29 H 0.255 0.745 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.022 0.978 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 -14.695 -3.562 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.006 3.994 11 C -0.027 4.027 12 N -0.308 5.308 13 C 0.372 3.628 14 O -0.452 6.452 15 C -0.145 4.145 16 C -0.179 4.179 17 C -0.230 4.230 18 C -0.128 4.128 19 N -0.078 5.078 20 C 0.018 3.982 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.145 4.145 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.107 4.107 27 C -0.076 4.076 28 C 0.036 3.964 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.173 0.827 35 H 0.158 0.842 36 H 0.180 0.820 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.150 0.850 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.040 0.960 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.489 -15.295 -2.950 17.740 hybrid contribution 0.251 1.127 -0.004 1.154 sum -8.238 -14.168 -2.954 16.653 Atomic orbital electron populations 1.69944 1.05319 1.25546 1.53914 1.25256 0.95436 0.98470 0.99941 0.86184 0.79323 0.83710 0.77324 1.20175 1.21487 1.21590 1.19222 0.90408 0.83441 1.45536 0.91708 1.43941 1.31059 1.05091 1.51315 1.21294 0.98441 0.87296 0.92388 1.22253 0.85995 1.00795 0.93635 1.47735 1.28118 1.08524 1.46398 1.17029 0.81902 0.83281 0.80612 1.90682 1.69315 1.35005 1.50207 1.20111 0.93515 0.98640 1.02252 1.21675 0.98822 1.00565 0.96868 1.20803 0.98244 1.00664 1.03295 1.21883 0.96945 1.02165 0.91832 1.43934 1.16073 1.26221 1.21582 1.20924 1.04024 0.88320 0.84937 1.19918 0.93810 1.02093 0.95733 1.20971 0.93965 0.99309 0.97863 1.21081 0.99744 0.99596 0.94040 1.21227 0.93934 0.98893 0.98804 1.21230 0.95086 0.98954 0.98333 1.21345 1.00699 0.95880 0.92826 1.23639 1.00715 0.85704 0.97537 1.21251 0.88480 0.96392 0.90288 0.93495 0.96016 0.91554 0.89990 0.91832 0.82655 0.84219 0.81978 0.86648 0.88636 0.86360 0.86062 0.86011 0.85775 0.85007 0.91855 0.87814 0.95996 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 11.03 55.49 0.61 -24.95 16 2 C 0.01 0.22 5.10 -17.43 -0.09 0.13 16 3 Si 0.90 21.16 29.56 -169.99 -5.02 16.13 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.84 9.56 -15.06 -0.14 -6.98 16 8 H 0.07 1.70 7.84 -52.49 -0.41 1.29 16 9 N -0.59 -14.53 2.95 -171.77 -0.51 -15.04 16 10 C 0.13 2.81 6.67 -3.60 -0.02 2.78 16 11 C 0.10 1.81 6.59 -3.60 -0.02 1.78 16 12 N -0.58 -10.88 2.94 -173.76 -0.51 -11.39 16 13 C 0.58 10.73 7.54 -12.86 -0.10 10.64 16 14 O -0.57 -11.07 13.11 5.19 0.07 -11.00 16 15 C -0.03 -0.52 6.49 -81.98 -0.53 -1.05 16 16 C -0.15 -2.29 8.52 -39.12 -0.33 -2.62 16 17 C -0.21 -2.62 10.81 -39.98 -0.43 -3.05 16 18 C 0.01 0.07 11.37 -16.91 -0.19 -0.12 16 19 N -0.40 -5.67 2.74 -114.16 -0.31 -5.99 16 20 C 0.14 1.72 5.87 -5.20 -0.03 1.69 16 21 C -0.11 -1.52 5.46 -104.63 -0.57 -2.10 16 22 C -0.10 -1.19 9.72 -39.58 -0.38 -1.58 16 23 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 24 C -0.11 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 26 C -0.09 -1.33 9.68 -39.59 -0.38 -1.71 16 27 C 0.05 0.89 5.59 -3.37 -0.02 0.88 16 28 C 0.16 3.80 5.45 -3.37 -0.02 3.78 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 32 H 0.08 1.46 6.99 -51.92 -0.36 1.10 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.16 2.19 5.90 -52.49 -0.31 1.88 16 35 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.61 6.33 -51.93 -0.33 1.28 16 38 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.13 2.17 6.61 -52.48 -0.35 1.83 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.10 1.79 3.43 -51.93 -0.18 1.61 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 2.56 6.11 -51.92 -0.32 2.24 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -31.41 376.69 -10.92 -42.32 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.45 Total: 7.39 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.47 Total: -3.16 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.72 Total: -57.37 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.41 -10.92 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152644848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.125 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds