Wall clock time and date at job start Tue Mar 31 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99943 * 2 1 4 4 H 1.48497 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46999 * 300.00122 * 3 2 1 6 6 H 1.48498 * 109.47070 * 60.00170 * 3 2 1 7 7 C 1.38813 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99623 * 167.95721 * 7 2 1 9 9 N 1.36934 * 119.99737 * 347.95785 * 7 2 1 10 10 C 1.46921 * 120.63378 * 325.02098 * 9 7 2 11 11 C 1.53189 * 108.77680 * 233.58800 * 10 9 7 12 12 C 1.53042 * 109.31328 * 305.36633 * 11 10 9 13 13 C 1.53034 * 109.53723 * 61.36213 * 12 11 10 14 14 H 1.09003 * 109.49987 * 58.62197 * 13 12 11 15 15 C 1.53003 * 109.49800 * 178.68264 * 13 12 11 16 16 N 1.46493 * 109.47577 * 185.00171 * 15 13 12 17 17 C 1.34773 * 120.00584 * 179.97438 * 16 15 13 18 18 O 1.21595 * 119.99448 * 0.02562 * 17 16 15 19 19 C 1.47550 * 120.00619 * 180.02562 * 17 16 15 20 20 C 1.38698 * 120.38370 * 5.60584 * 19 17 16 21 21 C 1.38968 * 120.53450 * 179.97438 * 20 19 17 22 22 C 1.36211 * 121.24060 * 359.97438 * 21 20 19 23 23 C 1.40706 * 120.19877 * 0.02562 * 22 21 20 24 24 N 1.33691 * 120.94657 * 180.02562 * 23 22 21 25 25 C 1.31069 * 121.34509 * 179.69844 * 24 23 22 26 26 C 1.39338 * 121.70221 * 0.55806 * 25 24 23 27 27 C 1.36680 * 119.87069 * 359.42558 * 26 25 24 28 28 C 1.40466 * 118.16619 * 0.28070 * 27 26 25 29 29 C 1.46930 * 120.62560 * 145.00139 * 9 7 2 30 30 H 0.97005 * 120.00136 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58593 * 113.80128 * 10 9 7 32 32 H 1.09000 * 109.58920 * 353.37949 * 10 9 7 33 33 H 1.08998 * 109.49967 * 185.41622 * 11 10 9 34 34 H 1.09004 * 109.52519 * 65.33346 * 11 10 9 35 35 H 1.08999 * 109.45681 * 301.34015 * 12 11 10 36 36 H 1.09004 * 109.44432 * 181.37852 * 12 11 10 37 37 H 1.09001 * 109.47184 * 64.99508 * 15 13 12 38 38 H 1.09004 * 109.47183 * 305.00603 * 15 13 12 39 39 H 0.97008 * 119.99709 * 0.02562 * 16 15 13 40 40 H 1.08001 * 119.73425 * 359.95845 * 20 19 17 41 41 H 1.07997 * 119.37827 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.90039 * 180.02562 * 22 21 20 43 43 H 1.07995 * 119.14771 * 180.28483 * 25 24 23 44 44 H 1.08005 * 120.06601 * 179.70740 * 26 25 24 45 45 H 1.08001 * 120.91274 * 180.25796 * 27 26 25 46 46 H 1.09000 * 109.58940 * 6.62366 * 29 9 7 47 47 H 1.09001 * 109.58817 * 246.19314 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0724 -1.2125 -0.1946 9 7 1.3481 -2.3748 0.2485 10 6 0.2299 -2.4163 1.2006 11 6 0.5047 -3.5109 2.2365 12 6 0.7663 -4.8355 1.5161 13 6 2.0000 -4.6965 0.6213 14 1 2.8602 -4.4151 1.2288 15 6 2.2800 -6.0307 -0.0733 16 7 3.5273 -5.9324 -0.8353 17 6 3.9766 -6.9945 -1.5328 18 8 3.3463 -8.0343 -1.5299 19 6 5.2331 -6.8956 -2.2998 20 6 6.0178 -5.7549 -2.2168 21 6 7.2021 -5.6586 -2.9374 22 6 7.6249 -6.6743 -3.7406 23 6 6.8611 -7.8504 -3.8556 24 7 7.2622 -8.8567 -4.6391 25 6 6.5599 -9.9581 -4.7475 26 6 5.3584 -10.1307 -4.0633 27 6 4.8926 -9.1399 -3.2451 28 6 5.6525 -7.9643 -3.1284 29 6 1.7422 -3.6155 -0.4330 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6947 -2.6405 0.6687 32 1 0.1409 -1.4526 1.7020 33 1 -0.3601 -3.6175 2.8913 34 1 1.3786 -3.2404 2.8292 35 1 -0.0985 -5.0933 0.9047 36 1 0.9379 -5.6211 2.2520 37 1 1.4587 -6.2677 -0.7496 38 1 2.3726 -6.8177 0.6753 39 1 4.0303 -5.1029 -0.8373 40 1 5.7057 -4.9348 -1.5872 41 1 7.7984 -4.7617 -2.8592 42 1 8.5491 -6.5766 -4.2907 43 1 6.9196 -10.7505 -5.3871 44 1 4.7986 -11.0474 -4.1757 45 1 3.9655 -9.2575 -2.7036 46 1 2.6511 -3.4430 -1.0094 47 1 0.9409 -3.9375 -1.0980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267239141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:52 Heat of formation + Delta-G solvation = 36.337349 kcal Electronic energy + Delta-G solvation = -28620.979304 eV Core-core repulsion = 24768.787238 eV Total energy + Delta-G solvation = -3852.192066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26584 -39.59157 -37.87125 -37.13616 -35.02236 -33.50551 -33.11347 -31.09670 -30.78685 -30.46748 -29.80536 -25.89750 -25.31755 -24.66337 -23.67639 -23.15633 -22.14331 -20.99935 -20.69050 -19.19553 -18.40733 -17.79667 -17.06003 -16.73988 -16.22620 -15.95346 -15.47691 -15.02426 -14.88594 -14.62388 -14.45001 -14.15241 -14.00313 -13.70264 -13.50652 -13.35513 -13.00618 -12.84451 -12.38998 -12.35649 -12.34069 -12.22275 -11.90868 -11.60798 -11.32315 -11.04428 -10.80906 -10.69158 -10.57132 -10.36218 -10.27052 -10.22018 -10.00178 -9.69894 -9.46639 -9.36801 -9.11495 -9.06449 -8.54234 -8.50368 -6.62902 -5.85148 -3.36428 -0.09444 0.56791 1.53928 2.43649 3.03539 3.09617 3.31376 3.39239 3.40785 3.91723 4.01093 4.36907 4.41839 4.46761 4.55607 4.65440 4.81992 4.87939 5.01921 5.09251 5.19403 5.25085 5.36169 5.40980 5.52699 5.55655 5.59329 5.72158 5.76313 5.83556 5.92221 5.93306 5.99616 6.09187 6.16956 6.25313 6.31378 6.32620 6.44501 6.54062 6.54980 6.64785 6.71821 6.80091 6.91365 7.32701 7.42201 7.59943 7.64764 7.73503 8.10076 8.42940 9.16026 9.76663 10.37800 11.22884 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002614 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.900028 B =10708.461910 C =12194.945126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.259 4.259 8 H 0.062 0.938 9 N -0.590 5.590 10 C 0.173 3.827 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.073 0.927 15 C 0.126 3.874 16 N -0.713 5.713 17 C 0.559 3.441 18 O -0.540 6.540 19 C -0.111 4.111 20 C -0.072 4.072 21 C -0.109 4.109 22 C -0.068 4.068 23 C 0.117 3.883 24 N -0.479 5.479 25 C 0.131 3.869 26 C -0.181 4.181 27 C -0.060 4.060 28 C -0.067 4.067 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.019 0.981 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.404 0.596 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.158 0.842 44 H 0.138 0.862 45 H 0.179 0.821 46 H 0.049 0.951 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 -16.382 -4.063 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.389 4.389 8 H 0.079 0.921 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.003 3.997 16 N -0.363 5.363 17 C 0.347 3.653 18 O -0.421 6.421 19 C -0.115 4.115 20 C -0.091 4.091 21 C -0.129 4.129 22 C -0.087 4.087 23 C -0.004 4.004 24 N -0.187 5.187 25 C -0.042 4.042 26 C -0.201 4.201 27 C -0.085 4.085 28 C -0.069 4.069 29 C 0.027 3.973 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.240 0.760 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.176 0.824 44 H 0.156 0.844 45 H 0.196 0.804 46 H 0.068 0.932 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.662 -16.725 -4.474 20.874 hybrid contribution -0.151 1.227 0.402 1.300 sum 11.511 -15.497 -4.072 19.730 Atomic orbital electron populations 1.70009 1.05368 1.25529 1.53297 1.25257 0.95335 0.98561 0.99878 0.86243 0.79375 0.83901 0.77336 1.20161 1.21588 1.21512 1.19117 0.90913 0.84020 1.44870 0.92056 1.43948 1.37809 1.03995 1.45479 1.20717 0.89262 0.96406 0.88900 1.22178 1.00255 0.96486 0.99211 1.21329 0.96890 0.97755 0.97735 1.21977 0.99199 0.94003 0.98765 0.90843 1.21543 0.85001 0.98439 0.94747 1.46023 1.26058 1.14837 1.49400 1.18073 0.84438 0.83728 0.79042 1.90542 1.58893 1.28880 1.63754 1.19906 0.96225 0.95253 1.00112 1.21534 0.93903 0.96315 0.97347 1.20869 0.96347 0.99332 0.96336 1.21007 0.99284 0.91029 0.97372 1.18855 0.92543 0.94285 0.94685 1.68050 1.32752 1.00666 1.17241 1.23001 0.91053 0.94473 0.95652 1.22060 0.98094 1.00989 0.98974 1.22685 1.00580 0.90740 0.94458 1.18632 0.95665 0.95021 0.97606 1.20917 0.97653 0.86879 0.91855 0.93583 0.96263 0.90406 0.93163 0.92750 0.92408 0.93401 0.91216 0.91634 0.76007 0.84614 0.84297 0.84308 0.82433 0.84437 0.80421 0.93242 0.96315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 11.42 55.49 0.63 -24.89 16 2 C 0.01 0.25 4.99 -17.43 -0.09 0.17 16 3 Si 0.90 20.97 29.57 -169.99 -5.03 15.94 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.26 -6.80 9.53 -15.06 -0.14 -6.94 16 8 H 0.06 1.56 7.86 -52.49 -0.41 1.15 16 9 N -0.59 -14.03 2.96 -172.33 -0.51 -14.54 16 10 C 0.17 3.96 5.24 -3.72 -0.02 3.94 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.10 -1.55 5.17 -26.69 -0.14 -1.68 16 13 C -0.12 -1.84 2.37 -90.50 -0.21 -2.05 16 14 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 15 C 0.13 1.72 5.07 -4.04 -0.02 1.70 16 16 N -0.71 -9.05 5.28 -61.34 -0.32 -9.37 16 17 C 0.56 7.67 7.73 -12.46 -0.10 7.57 16 18 O -0.54 -8.55 13.40 5.28 0.07 -8.47 16 19 C -0.11 -1.37 5.90 -104.66 -0.62 -1.99 16 20 C -0.07 -0.72 9.52 -39.14 -0.37 -1.09 16 21 C -0.11 -0.96 9.92 -40.04 -0.40 -1.36 16 22 C -0.07 -0.68 9.96 -39.38 -0.39 -1.07 16 23 C 0.12 1.44 6.60 -84.88 -0.56 0.88 16 24 N -0.48 -5.73 10.34 -10.99 -0.11 -5.84 16 25 C 0.13 1.26 11.15 -17.47 -0.19 1.06 16 26 C -0.18 -1.75 10.03 -39.74 -0.40 -2.15 16 27 C -0.06 -0.73 9.29 -39.31 -0.37 -1.09 16 28 C -0.07 -0.86 5.76 -106.54 -0.61 -1.47 16 29 C 0.15 2.97 5.60 -3.71 -0.02 2.95 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 2.00 6.45 -51.93 -0.33 1.67 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 4.55 5.77 -40.82 -0.24 4.31 16 40 H 0.14 1.10 6.42 -52.49 -0.34 0.76 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 45 H 0.18 2.35 4.96 -52.51 -0.26 2.09 16 46 H 0.05 0.91 7.14 -51.93 -0.37 0.54 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -31.67 376.63 -10.99 -42.66 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.58 Total: 4.20 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -4.81 Total: -5.35 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.31 Total: -54.65 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.67 -10.99 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267239141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.997 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds