Wall clock time and date at job start Tue Mar 31 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99943 * 2 1 4 4 H 1.48497 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46999 * 300.00122 * 3 2 1 6 6 H 1.48498 * 109.47070 * 60.00170 * 3 2 1 7 7 C 1.38813 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99623 * 167.95721 * 7 2 1 9 9 N 1.36934 * 119.99737 * 347.95785 * 7 2 1 10 10 C 1.46921 * 120.63378 * 325.02098 * 9 7 2 11 11 C 1.53189 * 108.77680 * 233.58800 * 10 9 7 12 12 C 1.53042 * 109.31328 * 305.36633 * 11 10 9 13 13 C 1.53034 * 109.53723 * 61.36213 * 12 11 10 14 14 H 1.09003 * 109.49987 * 58.62197 * 13 12 11 15 15 C 1.53003 * 109.49800 * 178.68264 * 13 12 11 16 16 N 1.46493 * 109.47577 * 185.00171 * 15 13 12 17 17 C 1.34773 * 120.00584 * 179.97438 * 16 15 13 18 18 O 1.21595 * 119.99448 * 0.02562 * 17 16 15 19 19 C 1.47550 * 120.00619 * 180.02562 * 17 16 15 20 20 C 1.38698 * 120.38370 * 5.60584 * 19 17 16 21 21 C 1.38968 * 120.53450 * 179.97438 * 20 19 17 22 22 C 1.36211 * 121.24060 * 359.97438 * 21 20 19 23 23 C 1.40706 * 120.19877 * 0.02562 * 22 21 20 24 24 N 1.33691 * 120.94657 * 180.02562 * 23 22 21 25 25 C 1.31069 * 121.34509 * 179.69844 * 24 23 22 26 26 C 1.39338 * 121.70221 * 0.55806 * 25 24 23 27 27 C 1.36680 * 119.87069 * 359.42558 * 26 25 24 28 28 C 1.40466 * 118.16619 * 0.28070 * 27 26 25 29 29 C 1.46930 * 120.62560 * 145.00139 * 9 7 2 30 30 H 0.97005 * 120.00136 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58593 * 113.80128 * 10 9 7 32 32 H 1.09000 * 109.58920 * 353.37949 * 10 9 7 33 33 H 1.08998 * 109.49967 * 185.41622 * 11 10 9 34 34 H 1.09004 * 109.52519 * 65.33346 * 11 10 9 35 35 H 1.08999 * 109.45681 * 301.34015 * 12 11 10 36 36 H 1.09004 * 109.44432 * 181.37852 * 12 11 10 37 37 H 1.09001 * 109.47184 * 64.99508 * 15 13 12 38 38 H 1.09004 * 109.47183 * 305.00603 * 15 13 12 39 39 H 0.97008 * 119.99709 * 0.02562 * 16 15 13 40 40 H 1.08001 * 119.73425 * 359.95845 * 20 19 17 41 41 H 1.07997 * 119.37827 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.90039 * 180.02562 * 22 21 20 43 43 H 1.07995 * 119.14771 * 180.28483 * 25 24 23 44 44 H 1.08005 * 120.06601 * 179.70740 * 26 25 24 45 45 H 1.08001 * 120.91274 * 180.25796 * 27 26 25 46 46 H 1.09000 * 109.58940 * 6.62366 * 29 9 7 47 47 H 1.09001 * 109.58817 * 246.19314 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0724 -1.2125 -0.1946 9 7 1.3481 -2.3748 0.2485 10 6 0.2299 -2.4163 1.2006 11 6 0.5047 -3.5109 2.2365 12 6 0.7663 -4.8355 1.5161 13 6 2.0000 -4.6965 0.6213 14 1 2.8602 -4.4151 1.2288 15 6 2.2800 -6.0307 -0.0733 16 7 3.5273 -5.9324 -0.8353 17 6 3.9766 -6.9945 -1.5328 18 8 3.3463 -8.0343 -1.5299 19 6 5.2331 -6.8956 -2.2998 20 6 6.0178 -5.7549 -2.2168 21 6 7.2021 -5.6586 -2.9374 22 6 7.6249 -6.6743 -3.7406 23 6 6.8611 -7.8504 -3.8556 24 7 7.2622 -8.8567 -4.6391 25 6 6.5599 -9.9581 -4.7475 26 6 5.3584 -10.1307 -4.0633 27 6 4.8926 -9.1399 -3.2451 28 6 5.6525 -7.9643 -3.1284 29 6 1.7422 -3.6155 -0.4330 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6947 -2.6405 0.6687 32 1 0.1409 -1.4526 1.7020 33 1 -0.3601 -3.6175 2.8913 34 1 1.3786 -3.2404 2.8292 35 1 -0.0985 -5.0933 0.9047 36 1 0.9379 -5.6211 2.2520 37 1 1.4587 -6.2677 -0.7496 38 1 2.3726 -6.8177 0.6753 39 1 4.0303 -5.1029 -0.8373 40 1 5.7057 -4.9348 -1.5872 41 1 7.7984 -4.7617 -2.8592 42 1 8.5491 -6.5766 -4.2907 43 1 6.9196 -10.7505 -5.3871 44 1 4.7986 -11.0474 -4.1757 45 1 3.9655 -9.2575 -2.7036 46 1 2.6511 -3.4430 -1.0094 47 1 0.9409 -3.9375 -1.0980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267239141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:51 Heat of formation + Delta-G solvation = 17.873862 kcal Electronic energy + Delta-G solvation = -28621.779941 eV Core-core repulsion = 24768.787238 eV Total energy + Delta-G solvation = -3852.992703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10759 -40.61902 -39.32402 -37.93319 -36.35980 -34.73686 -34.33431 -32.39252 -32.22482 -31.55225 -30.88102 -27.29932 -26.99503 -25.52743 -24.46377 -24.17319 -23.76628 -22.41894 -21.73616 -20.64157 -19.26727 -18.75600 -18.47707 -17.85886 -17.19056 -16.97551 -16.80977 -16.55024 -15.84045 -15.77707 -15.57303 -15.33177 -15.16385 -15.00422 -14.77699 -14.51455 -14.12890 -14.05564 -13.87708 -13.68336 -13.59126 -13.08564 -12.98051 -12.86593 -12.72522 -12.55218 -12.33034 -12.27752 -11.95801 -11.82610 -11.56470 -11.52304 -11.39182 -11.18504 -11.07303 -10.56131 -10.29155 -10.19347 -9.83371 -9.32935 -8.57327 -7.86265 -5.40735 -0.90691 -0.20784 0.66913 1.46847 1.48869 1.58791 1.63030 2.04183 2.17057 2.50747 3.09593 3.30134 3.30237 3.49120 3.60059 3.74224 3.80497 3.85112 3.99369 4.01627 4.06337 4.07096 4.17270 4.40523 4.41959 4.44665 4.57895 4.61753 4.75781 4.77449 4.79236 4.88035 4.91131 4.99332 5.02616 5.10400 5.12098 5.23758 5.25690 5.30763 5.35149 5.39925 5.47397 5.56062 5.57398 5.68191 5.77545 5.78489 6.41053 6.44442 6.85473 7.08870 7.17308 7.85619 8.41684 9.19567 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002614 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.900028 B =10708.461910 C =12194.945126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.608 5.608 10 C 0.177 3.823 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.101 4.101 14 H 0.080 0.920 15 C 0.137 3.863 16 N -0.708 5.708 17 C 0.559 3.441 18 O -0.568 6.568 19 C -0.137 4.137 20 C -0.063 4.063 21 C -0.105 4.105 22 C -0.070 4.070 23 C 0.094 3.906 24 N -0.497 5.497 25 C 0.128 3.872 26 C -0.171 4.171 27 C -0.088 4.088 28 C -0.086 4.086 29 C 0.152 3.848 30 H 0.249 0.751 31 H -0.008 1.008 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.411 0.589 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.157 0.843 43 H 0.194 0.806 44 H 0.166 0.834 45 H 0.164 0.836 46 H 0.057 0.943 47 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.821 -17.325 -4.015 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.121 4.121 14 H 0.098 0.902 15 C 0.013 3.987 16 N -0.359 5.359 17 C 0.348 3.652 18 O -0.450 6.450 19 C -0.141 4.141 20 C -0.082 4.082 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.026 4.026 24 N -0.205 5.205 25 C -0.044 4.044 26 C -0.190 4.190 27 C -0.113 4.113 28 C -0.088 4.088 29 C 0.027 3.973 30 H 0.058 0.942 31 H 0.010 0.990 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.249 0.751 40 H 0.172 0.828 41 H 0.190 0.810 42 H 0.175 0.825 43 H 0.211 0.789 44 H 0.184 0.816 45 H 0.181 0.819 46 H 0.075 0.925 47 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 14.069 -17.682 -4.423 23.025 hybrid contribution -0.876 1.455 0.316 1.727 sum 13.193 -16.227 -4.107 21.313 Atomic orbital electron populations 1.70172 1.06918 1.25771 1.55290 1.26026 0.96046 1.01813 1.00488 0.85231 0.79001 0.79818 0.76554 1.18374 1.22173 1.21965 1.19515 0.91484 0.85038 1.43276 0.91262 1.44222 1.37692 1.04835 1.46387 1.20544 0.88291 0.96467 0.89560 1.22002 1.01082 0.95836 0.97989 1.21331 0.96732 0.97160 0.98273 1.21731 0.99459 0.93365 0.97541 0.90199 1.21349 0.85190 0.97404 0.94738 1.45935 1.25740 1.15055 1.49177 1.18322 0.84748 0.83342 0.78813 1.90534 1.59833 1.29894 1.64705 1.19860 0.96407 0.96497 1.01299 1.21841 0.93718 0.95762 0.96844 1.21229 0.95967 1.00112 0.95174 1.21325 0.99624 0.90490 0.97405 1.19192 0.92854 0.95376 0.95206 1.68100 1.33452 1.01364 1.17601 1.23615 0.90673 0.94651 0.95509 1.22389 0.98066 1.01201 0.97357 1.22665 1.00667 0.91912 0.96039 1.18842 0.96287 0.95498 0.98215 1.21035 0.97239 0.86297 0.92749 0.94219 0.98968 0.93982 0.91321 0.92633 0.92732 0.90031 0.92209 0.90432 0.75137 0.82756 0.80986 0.82526 0.78878 0.81597 0.81927 0.92459 0.97912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.90 11.42 21.65 0.25 -54.65 16 2 C -0.05 -2.61 4.99 84.86 0.42 -2.18 16 3 Si 0.97 43.43 29.57 68.60 2.03 45.46 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.26 -13.77 9.53 84.03 0.80 -12.97 16 8 H 0.07 3.45 7.86 -2.91 -0.02 3.43 16 9 N -0.61 -29.11 2.96 -699.12 -2.07 -31.18 16 10 C 0.18 8.30 5.24 86.36 0.45 8.75 16 11 C -0.13 -4.53 6.08 30.67 0.19 -4.35 16 12 C -0.10 -2.82 5.17 30.62 0.16 -2.66 16 13 C -0.10 -2.93 2.37 -10.72 -0.03 -2.96 16 14 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 15 C 0.14 3.52 5.07 86.38 0.44 3.96 16 16 N -0.71 -17.10 5.28 -466.26 -2.46 -19.56 16 17 C 0.56 15.14 7.73 86.70 0.67 15.81 16 18 O -0.57 -18.18 13.40 -4.02 -0.05 -18.24 16 19 C -0.14 -3.31 5.90 -19.89 -0.12 -3.43 16 20 C -0.06 -1.14 9.52 22.55 0.21 -0.93 16 21 C -0.11 -1.60 9.92 21.97 0.22 -1.38 16 22 C -0.07 -1.27 9.96 22.40 0.22 -1.05 16 23 C 0.09 2.24 6.60 40.27 0.27 2.51 16 24 N -0.50 -11.28 10.34 -188.69 -1.95 -13.23 16 25 C 0.13 2.24 11.15 85.07 0.95 3.19 16 26 C -0.17 -3.11 10.03 22.17 0.22 -2.89 16 27 C -0.09 -2.16 9.29 22.45 0.21 -1.95 16 28 C -0.09 -2.20 5.76 -21.10 -0.12 -2.33 16 29 C 0.15 5.82 5.60 86.36 0.48 6.30 16 30 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.04 2.24 6.45 -2.39 -0.02 2.23 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.41 8.53 5.77 -92.70 -0.54 7.99 16 40 H 0.15 2.11 6.42 -2.91 -0.02 2.09 16 41 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.16 4.49 4.96 -3.23 -0.02 4.47 16 46 H 0.06 2.06 7.14 -2.39 -0.02 2.04 16 47 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -71.28 376.63 1.85 -69.44 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.46 Total: 20.51 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.65 Total: 1.45 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -6.23 Total: -118.62 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -71.28 1.85 -69.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267239141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.310 kcal (2) G-P(sol) polarization free energy of solvation -71.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds