Wall clock time and date at job start Tue Mar 31 2020 22:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99938 * 2 1 4 4 H 1.48503 * 109.46899 * 269.93404 * 3 2 1 5 5 H 1.48501 * 109.47036 * 29.93023 * 3 2 1 6 6 H 1.48494 * 109.46996 * 149.93357 * 3 2 1 7 7 C 1.38812 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00102 * 340.98533 * 7 2 1 9 9 N 1.36938 * 119.99692 * 160.98545 * 7 2 1 10 10 C 1.46927 * 120.62983 * 151.29962 * 9 7 2 11 11 C 1.53198 * 108.77356 * 126.39168 * 10 9 7 12 12 C 1.53041 * 109.31225 * 54.63717 * 11 10 9 13 13 C 1.53036 * 109.53712 * 298.63532 * 12 11 10 14 14 H 1.08998 * 109.49978 * 301.37904 * 13 12 11 15 15 C 1.53008 * 109.49746 * 181.31499 * 13 12 11 16 16 N 1.46501 * 109.47202 * 175.06361 * 15 13 12 17 17 C 1.34775 * 119.99968 * 180.02562 * 16 15 13 18 18 O 1.21582 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.47550 * 119.99741 * 180.02562 * 17 16 15 20 20 C 1.38698 * 120.39011 * 354.14127 * 19 17 16 21 21 C 1.38966 * 120.53519 * 180.02562 * 20 19 17 22 22 C 1.36204 * 121.24014 * 0.26240 * 21 20 19 23 23 C 1.40710 * 120.19995 * 359.49249 * 22 21 20 24 24 N 1.33691 * 120.94138 * 180.22813 * 23 22 21 25 25 C 1.31068 * 121.34277 * 180.26966 * 24 23 22 26 26 C 1.39340 * 121.70459 * 0.02562 * 25 24 23 27 27 C 1.36681 * 119.86906 * 359.97438 * 26 25 24 28 28 C 1.40465 * 118.16732 * 0.02562 * 27 26 25 29 29 C 1.46938 * 120.60576 * 331.28352 * 9 7 2 30 30 H 0.97002 * 119.99773 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58377 * 6.60649 * 10 9 7 32 32 H 1.08997 * 109.71067 * 246.24866 * 10 9 7 33 33 H 1.09001 * 109.49530 * 294.68733 * 11 10 9 34 34 H 1.08997 * 109.49734 * 174.59008 * 11 10 9 35 35 H 1.08998 * 109.45878 * 178.61210 * 12 11 10 36 36 H 1.09000 * 109.44775 * 58.64476 * 12 11 10 37 37 H 1.08999 * 109.46772 * 55.06883 * 15 13 12 38 38 H 1.09001 * 109.46969 * 295.06343 * 15 13 12 39 39 H 0.97009 * 119.99652 * 0.02562 * 16 15 13 40 40 H 1.07997 * 119.72833 * 0.05420 * 20 19 17 41 41 H 1.08003 * 119.38206 * 179.97438 * 21 20 19 42 42 H 1.08006 * 119.90090 * 179.71713 * 22 21 20 43 43 H 1.07997 * 119.14731 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.06673 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.90880 * 180.02562 * 27 26 25 46 46 H 1.08998 * 109.56256 * 113.80505 * 29 9 7 47 47 H 1.08994 * 109.61457 * 353.37522 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4991 2.0456 -1.4001 5 1 1.4469 2.6531 0.6986 6 1 3.5470 1.4406 0.7014 7 6 2.0103 -1.2022 0.0005 8 1 1.5144 -2.1118 0.3057 9 7 3.3236 -1.2347 -0.3858 10 6 4.2391 -2.2470 0.1580 11 6 4.9123 -2.9796 -1.0069 12 6 5.5814 -1.9575 -1.9287 13 6 4.5217 -1.0127 -2.5000 14 1 3.7761 -1.5902 -3.0465 15 6 5.1871 -0.0119 -3.4469 16 7 4.1593 0.8156 -4.0836 17 6 4.5144 1.7726 -4.9636 18 8 5.6877 1.9489 -5.2295 19 6 3.4793 2.6063 -5.6044 20 6 2.1345 2.3345 -5.4013 21 6 1.1571 3.1174 -6.0037 22 6 1.4881 4.1642 -6.8099 23 6 2.8398 4.4803 -7.0403 24 7 3.1814 5.5072 -7.8252 25 6 4.4379 5.8054 -8.0494 26 6 5.4773 5.0698 -7.4837 27 6 5.1957 4.0073 -6.6713 28 6 3.8474 3.6925 -6.4348 29 6 3.8434 -0.2577 -1.3525 30 1 -0.4850 0.8401 -0.0004 31 1 3.6782 -2.9597 0.7627 32 1 4.9981 -1.7637 0.7731 33 1 4.1626 -3.5386 -1.5669 34 1 5.6642 -3.6666 -0.6187 35 1 6.0821 -2.4779 -2.7451 36 1 6.3132 -1.3820 -1.3618 37 1 5.7447 -0.5514 -4.2124 38 1 5.8680 0.6250 -2.8823 39 1 3.2232 0.6746 -3.8717 40 1 1.8446 1.5079 -4.7696 41 1 0.1154 2.8888 -5.8332 42 1 0.7108 4.7556 -7.2708 43 1 4.6736 6.6429 -8.6892 44 1 6.5034 5.3392 -7.6860 45 1 5.9881 3.4259 -6.2237 46 1 4.5696 0.3904 -0.8619 47 1 3.0219 0.3417 -1.7447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267239146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:54 Heat of formation + Delta-G solvation = 23.945891 kcal Electronic energy + Delta-G solvation = -29279.663840 eV Core-core repulsion = 25426.934440 eV Total energy + Delta-G solvation = -3852.729400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17100 -40.71859 -39.55851 -37.99700 -36.39334 -34.88461 -34.38751 -33.01607 -32.30530 -31.60691 -31.03538 -27.40518 -27.10701 -25.61832 -24.55329 -24.41396 -23.85227 -22.37362 -21.80377 -20.84786 -19.34314 -18.86418 -18.67527 -17.93030 -17.46354 -17.09941 -17.04210 -16.55702 -15.95904 -15.83320 -15.56372 -15.45759 -15.31076 -14.98328 -14.93931 -14.72970 -14.51346 -14.15703 -14.04470 -13.79915 -13.66631 -13.36913 -13.17638 -13.07361 -12.79198 -12.58829 -12.39733 -12.20468 -12.09364 -11.69986 -11.62773 -11.56954 -11.44531 -11.28243 -11.23623 -10.65969 -10.34393 -10.27628 -9.89188 -9.39389 -8.90757 -8.17422 -5.50094 -0.97221 -0.26413 0.61547 1.22567 1.38875 1.44907 1.55588 1.97093 2.10137 2.36630 3.03935 3.04537 3.24742 3.30359 3.42357 3.64592 3.74959 3.78054 3.83237 3.91000 3.96181 4.02576 4.10561 4.29997 4.35529 4.37970 4.45503 4.48537 4.59421 4.69371 4.70935 4.73451 4.76783 4.85928 4.95372 4.97667 5.03431 5.10592 5.17629 5.20904 5.23521 5.25914 5.30291 5.39988 5.50560 5.58841 5.73208 5.88025 6.13459 6.29220 6.81410 6.92068 6.97455 7.61804 8.03464 9.02509 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.003432 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.141620 B = 8157.537193 C = 9488.186641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.023 4.023 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.315 1.315 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.054 0.946 9 N -0.621 5.621 10 C 0.136 3.864 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.106 4.106 14 H 0.077 0.923 15 C 0.131 3.869 16 N -0.717 5.717 17 C 0.560 3.440 18 O -0.561 6.561 19 C -0.139 4.139 20 C -0.070 4.070 21 C -0.110 4.110 22 C -0.065 4.065 23 C 0.095 3.905 24 N -0.495 5.495 25 C 0.130 3.870 26 C -0.167 4.167 27 C -0.087 4.087 28 C -0.083 4.083 29 C 0.129 3.871 30 H 0.262 0.738 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.406 0.594 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.197 0.803 44 H 0.170 0.830 45 H 0.165 0.835 46 H 0.022 0.978 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 5.776 -15.657 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.219 4.219 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.244 1.244 6 H -0.200 1.200 7 C -0.377 4.377 8 H 0.072 0.928 9 N -0.345 5.345 10 C 0.012 3.988 11 C -0.163 4.163 12 C -0.136 4.136 13 C -0.127 4.127 14 H 0.095 0.905 15 C 0.007 3.993 16 N -0.368 5.368 17 C 0.349 3.651 18 O -0.442 6.442 19 C -0.143 4.143 20 C -0.089 4.089 21 C -0.129 4.129 22 C -0.084 4.084 23 C -0.025 4.025 24 N -0.203 5.203 25 C -0.043 4.043 26 C -0.186 4.186 27 C -0.112 4.112 28 C -0.086 4.086 29 C 0.004 3.996 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.243 0.757 40 H 0.160 0.840 41 H 0.186 0.814 42 H 0.178 0.822 43 H 0.214 0.786 44 H 0.188 0.812 45 H 0.182 0.818 46 H 0.040 0.960 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.580 6.363 -16.118 20.303 hybrid contribution -0.003 0.266 1.052 1.085 sum 10.577 6.630 -15.066 19.566 Atomic orbital electron populations 1.69928 1.07081 1.27095 1.55697 1.25779 0.95657 1.00078 1.00356 0.86122 0.78149 0.80980 0.78123 1.19226 1.24427 1.19993 1.18888 0.85977 0.93368 1.39430 0.92826 1.44492 1.06895 1.35621 1.47477 1.21186 0.91986 0.90686 0.94942 1.21888 0.99710 0.97745 0.96994 1.21376 0.96308 0.96495 0.99457 1.21812 0.98769 0.96716 0.95398 0.90502 1.21491 0.89940 0.92263 0.95564 1.46097 1.11866 1.35435 1.43353 1.18267 0.88099 0.79864 0.78872 1.90513 1.19759 1.69809 1.64163 1.19901 0.94062 0.98286 1.02066 1.21796 0.91512 0.98971 0.96630 1.21191 1.01343 0.94378 0.95979 1.21316 0.94069 0.96628 0.96384 1.19153 0.94408 0.93017 0.95960 1.68106 1.22032 1.15366 1.14842 1.23672 0.87002 0.98221 0.95386 1.22416 1.02880 0.95632 0.97719 1.22654 0.96500 0.96618 0.95429 1.18818 0.95473 0.96028 0.98285 1.21411 0.96293 0.91759 0.90145 0.92870 0.92868 0.95159 0.92737 0.89305 0.89569 0.91565 0.89568 0.91698 0.75710 0.83990 0.81438 0.82206 0.78586 0.81215 0.81773 0.96043 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 13.97 21.65 0.30 -57.05 16 2 C -0.02 -1.31 5.25 84.86 0.45 -0.87 16 3 Si 0.94 45.38 24.32 68.60 1.67 47.05 16 4 H -0.27 -11.77 6.52 99.48 0.65 -11.12 16 5 H -0.32 -15.81 7.11 99.48 0.71 -15.10 16 6 H -0.27 -13.25 6.74 99.48 0.67 -12.58 16 7 C -0.25 -13.45 10.04 84.03 0.84 -12.61 16 8 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 9 N -0.62 -27.68 2.76 -699.06 -1.93 -29.60 16 10 C 0.14 4.94 6.52 86.36 0.56 5.50 16 11 C -0.12 -3.40 6.08 30.67 0.19 -3.22 16 12 C -0.10 -2.44 5.17 30.62 0.16 -2.28 16 13 C -0.11 -3.15 2.37 -10.71 -0.03 -3.18 16 14 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 15 C 0.13 3.54 5.07 86.38 0.44 3.98 16 16 N -0.72 -20.66 5.28 -466.25 -2.46 -23.12 16 17 C 0.56 17.18 7.73 86.70 0.67 17.85 16 18 O -0.56 -18.86 13.41 -3.98 -0.05 -18.91 16 19 C -0.14 -4.00 5.90 -19.88 -0.12 -4.12 16 20 C -0.07 -1.74 9.52 22.55 0.21 -1.52 16 21 C -0.11 -2.29 9.92 21.97 0.22 -2.07 16 22 C -0.07 -1.44 9.96 22.40 0.22 -1.22 16 23 C 0.10 2.52 6.60 40.27 0.27 2.79 16 24 N -0.50 -12.11 10.34 -188.68 -1.95 -14.06 16 25 C 0.13 2.41 11.15 85.07 0.95 3.36 16 26 C -0.17 -3.19 10.03 22.17 0.22 -2.97 16 27 C -0.09 -2.27 9.29 22.45 0.21 -2.06 16 28 C -0.08 -2.37 5.76 -21.10 -0.12 -2.50 16 29 C 0.13 5.05 3.28 86.36 0.28 5.34 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.41 11.49 5.77 -92.70 -0.53 10.95 16 40 H 0.14 3.23 6.42 -2.91 -0.02 3.21 16 41 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 43 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.17 4.70 4.96 -3.20 -0.02 4.69 16 46 H 0.02 0.87 7.10 -2.39 -0.02 0.85 16 47 H 0.05 2.22 3.70 -2.39 -0.01 2.21 16 Total: -1.00 -71.46 369.69 1.57 -69.89 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.37 Total: 25.59 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.62 Total: 0.21 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -6.04 Total: -123.83 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.05 kcal Total: -71.46 1.57 -69.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267239146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.831 kcal (2) G-P(sol) polarization free energy of solvation -71.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds