Wall clock time and date at job start Tue Mar 31 2020 22:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47305 * 265.01418 * 3 2 1 5 5 H 1.48493 * 109.47366 * 25.01518 * 3 2 1 6 6 H 1.48500 * 109.46812 * 145.01412 * 3 2 1 7 7 C 1.37877 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00434 * 6.44030 * 7 2 1 9 9 C 1.50698 * 119.99852 * 186.44267 * 7 2 1 10 10 H 1.09000 * 109.47043 * 334.62106 * 9 7 2 11 11 C 1.52993 * 109.47266 * 214.61616 * 9 7 2 12 12 C 1.50699 * 109.47170 * 65.37111 * 11 9 7 13 13 O 1.21290 * 119.99913 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00532 * 180.02562 * 12 11 9 15 15 C 1.46496 * 120.00427 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.42611 * 35.10748 * 15 14 12 17 17 C 1.53031 * 109.42980 * 154.99537 * 15 14 12 18 18 C 1.53370 * 109.75245 * 191.73623 * 17 15 14 19 19 C 1.50945 * 108.20331 * 309.33988 * 18 17 15 20 20 N 1.30130 * 128.28403 * 196.99739 * 19 18 17 21 21 N 1.40318 * 108.12332 * 180.02562 * 20 19 18 22 22 H 0.96998 * 126.00567 * 179.87732 * 21 20 19 23 23 C 1.35192 * 107.99188 * 359.66013 * 21 20 19 24 24 C 1.34576 * 107.62149 * 0.25518 * 23 21 20 25 25 C 1.50879 * 128.33368 * 179.81880 * 24 23 21 26 26 C 1.50699 * 109.47208 * 94.61358 * 9 7 2 27 27 C 1.38236 * 119.99546 * 56.36150 * 26 9 7 28 28 C 1.38244 * 119.99874 * 179.78427 * 27 26 9 29 29 C 1.38239 * 119.99735 * 0.46702 * 28 27 26 30 30 C 1.38229 * 120.00209 * 359.76594 * 29 28 27 31 31 C 1.38237 * 120.00019 * 0.02562 * 30 29 28 32 32 H 0.97002 * 119.99828 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.47499 * 305.37021 * 11 9 7 34 34 H 1.09004 * 109.47305 * 185.36579 * 11 9 7 35 35 H 0.97008 * 119.99209 * 359.97438 * 14 12 11 36 36 H 1.09000 * 109.41772 * 71.64991 * 17 15 14 37 37 H 1.08996 * 109.37746 * 311.80034 * 17 15 14 38 38 H 1.09003 * 109.71398 * 189.66718 * 18 17 15 39 39 H 1.08997 * 109.71679 * 69.02109 * 18 17 15 40 40 H 1.08005 * 126.19486 * 180.27480 * 23 21 20 41 41 H 1.08997 * 109.71890 * 77.03437 * 25 24 23 42 42 H 1.09003 * 109.75064 * 316.41005 * 25 24 23 43 43 H 1.07997 * 120.00671 * 359.97438 * 27 26 9 44 44 H 1.08000 * 119.99843 * 180.24763 * 28 27 26 45 45 H 1.08001 * 119.99535 * 179.78888 * 29 28 27 46 46 H 1.07998 * 120.00211 * 180.02562 * 30 29 28 47 47 H 1.07998 * 120.00196 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6021 1.9855 -1.3947 5 1 1.3980 2.6807 0.5920 6 1 3.4901 1.4727 0.8028 7 6 2.0045 -1.1941 -0.0005 8 1 1.4696 -2.1263 -0.1058 9 6 3.5043 -1.1984 0.1459 10 1 3.9062 -0.2475 -0.2039 11 6 4.0947 -2.3387 -0.6859 12 6 3.8456 -2.0747 -2.1485 13 8 3.2537 -1.0733 -2.4918 14 7 4.2797 -2.9519 -3.0751 15 6 4.0371 -2.6955 -4.4970 16 1 4.0972 -1.6240 -4.6876 17 6 5.0940 -3.4211 -5.3326 18 6 5.0325 -2.9315 -6.7848 19 6 3.5990 -3.0150 -7.2503 20 7 3.1446 -2.9923 -8.4694 21 7 1.7463 -3.0966 -8.4161 22 1 1.1456 -3.1038 -9.1777 23 6 1.3838 -3.1901 -7.1171 24 6 2.5063 -3.1412 -6.3763 25 6 2.6400 -3.2030 -4.8747 26 6 3.8670 -1.3940 1.5955 27 6 3.4001 -2.4995 2.2816 28 6 3.7364 -2.6813 3.6101 29 6 4.5316 -1.7526 4.2551 30 6 4.9945 -0.6446 3.5703 31 6 4.6618 -0.4650 2.2407 32 1 -0.4850 0.8401 0.0004 33 1 3.6224 -3.2787 -0.4008 34 1 5.1679 -2.4019 -0.5058 35 1 4.7528 -3.7530 -2.8005 36 1 4.9049 -4.4942 -5.3036 37 1 6.0827 -3.2161 -4.9224 38 1 5.6605 -3.5634 -7.4128 39 1 5.3773 -1.8989 -6.8396 40 1 0.3757 -3.2869 -6.7416 41 1 2.5188 -4.2322 -4.5368 42 1 1.8817 -2.5720 -4.4111 43 1 2.7751 -3.2228 1.7790 44 1 3.3748 -3.5471 4.1450 45 1 4.7915 -1.8929 5.2939 46 1 5.6162 0.0807 4.0741 47 1 5.0231 0.4008 1.7058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356119548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:29 Heat of formation + Delta-G solvation = 51.437641 kcal Electronic energy + Delta-G solvation = -28888.069856 eV Core-core repulsion = 25036.532588 eV Total energy + Delta-G solvation = -3851.537268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49229 -39.30745 -38.43433 -36.63932 -34.07609 -33.26259 -31.83192 -31.56233 -30.34506 -30.18002 -29.08742 -27.73242 -25.77329 -24.35802 -22.68085 -21.89943 -21.48630 -21.03215 -20.10468 -19.31752 -18.74999 -17.63772 -16.91180 -16.48646 -16.00100 -15.75164 -15.30033 -14.66028 -14.61549 -14.28306 -14.06603 -13.76746 -13.71393 -13.31136 -13.17942 -12.90918 -12.72245 -12.64207 -12.49966 -12.38992 -12.14256 -12.02033 -11.79322 -11.68771 -11.12031 -10.99164 -10.80959 -10.73648 -10.52370 -10.40164 -10.31013 -9.84574 -9.58186 -9.45141 -9.16937 -8.88382 -8.59119 -8.40925 -8.35736 -8.18212 -7.79134 -5.96136 -3.92263 1.84673 2.12146 2.17253 2.70084 2.78217 3.45534 3.49480 3.50734 3.56156 3.66063 4.40602 4.55047 4.61203 4.72798 4.79935 5.02742 5.20344 5.32224 5.33745 5.46435 5.51130 5.54073 5.58106 5.58457 5.67834 5.71037 5.75483 5.84375 5.94578 5.97143 6.03516 6.10978 6.17034 6.26847 6.30547 6.35124 6.36483 6.63435 6.65900 6.72427 6.86130 6.97386 7.05155 7.16654 7.21930 7.29890 7.60407 7.60835 7.75041 7.85241 8.09912 8.55490 9.02761 9.07026 9.69728 11.16753 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.002950 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.627401 B = 9488.884831 C =10382.922685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.086 3.914 3 Si 0.872 3.128 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.485 4.485 8 H 0.071 0.929 9 C 0.056 3.944 10 H 0.049 0.951 11 C -0.118 4.118 12 C 0.514 3.486 13 O -0.500 6.500 14 N -0.745 5.745 15 C 0.151 3.849 16 H 0.087 0.913 17 C -0.122 4.122 18 C -0.033 4.033 19 C 0.080 3.920 20 N -0.294 5.294 21 N -0.488 5.488 22 H 0.437 0.563 23 C 0.061 3.939 24 C -0.224 4.224 25 C -0.053 4.053 26 C -0.038 4.038 27 C -0.102 4.102 28 C -0.128 4.128 29 C -0.150 4.150 30 C -0.126 4.126 31 C -0.136 4.136 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.393 0.607 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.177 0.823 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.854 -9.657 -8.600 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.116 4.116 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.089 0.911 9 C 0.037 3.963 10 H 0.067 0.933 11 C -0.158 4.158 12 C 0.301 3.699 13 O -0.371 6.371 14 N -0.399 5.399 15 C 0.046 3.954 16 H 0.105 0.895 17 C -0.161 4.161 18 C -0.073 4.073 19 C -0.089 4.089 20 N -0.117 5.117 21 N -0.196 5.196 22 H 0.281 0.719 23 C -0.084 4.084 24 C -0.236 4.236 25 C -0.093 4.093 26 C -0.039 4.039 27 C -0.120 4.120 28 C -0.146 4.146 29 C -0.168 4.168 30 C -0.145 4.145 31 C -0.155 4.155 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.194 0.806 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.517 -8.676 -10.055 16.339 hybrid contribution -0.375 0.515 0.587 0.866 sum 9.142 -8.161 -9.468 15.486 Atomic orbital electron populations 1.69900 1.06428 1.26795 1.50609 1.24872 0.94451 0.98834 0.93476 0.86942 0.80341 0.83817 0.78840 1.19820 1.22420 1.18595 1.20564 0.87792 0.94459 1.49410 0.91132 1.18118 0.97868 0.94233 0.86124 0.93314 1.21675 1.00348 1.02391 0.91414 1.20825 0.78062 0.82902 0.88120 1.90746 1.37603 1.27155 1.81623 1.46203 1.61654 1.26328 1.05694 1.20777 0.93247 1.00810 0.80550 0.89517 1.21827 0.99506 1.00765 0.93956 1.20046 0.88946 1.02832 0.95488 1.22355 0.97110 0.99209 0.90224 1.76939 0.88595 1.24929 1.21202 1.46277 1.05747 1.60663 1.06930 0.71909 1.22114 1.00220 1.01651 0.84444 1.20113 0.91639 1.14839 0.97012 1.20414 0.98366 1.01603 0.88906 1.20754 0.91523 0.92504 0.99069 1.20958 0.98858 0.98370 0.93776 1.21051 0.99169 0.99106 0.95261 1.20854 1.00963 0.95940 0.99056 1.20962 1.00895 0.97726 0.94877 1.21156 0.99794 0.99649 0.94857 0.92924 0.89784 0.91410 0.77389 0.91048 0.90317 0.89727 0.89554 0.80591 0.91165 0.89917 0.86284 0.87233 0.87479 0.87429 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 3 Si 0.87 22.75 27.04 -169.99 -4.60 18.15 16 4 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.26 -6.30 5.15 56.52 0.29 -6.01 16 7 C -0.49 -13.10 6.94 -34.44 -0.24 -13.33 16 8 H 0.07 2.06 8.06 -52.49 -0.42 1.63 16 9 C 0.06 1.25 1.28 -92.93 -0.12 1.13 16 10 H 0.05 1.17 4.79 -51.93 -0.25 0.92 16 11 C -0.12 -2.11 4.94 -27.89 -0.14 -2.24 16 12 C 0.51 9.55 7.54 -10.99 -0.08 9.47 16 13 O -0.50 -11.87 14.66 5.55 0.08 -11.79 16 14 N -0.74 -10.10 5.08 -53.60 -0.27 -10.38 16 15 C 0.15 1.98 2.40 -67.73 -0.16 1.82 16 16 H 0.09 1.37 7.54 -51.93 -0.39 0.98 16 17 C -0.12 -1.15 5.33 -26.52 -0.14 -1.29 16 18 C -0.03 -0.33 6.31 -27.57 -0.17 -0.51 16 19 C 0.08 1.02 7.10 -82.34 -0.58 0.43 16 20 N -0.29 -3.89 12.68 33.75 0.43 -3.47 16 21 N -0.49 -5.22 7.37 30.35 0.22 -5.00 16 22 H 0.44 3.14 8.96 -182.43 -1.64 1.50 16 23 C 0.06 0.69 11.95 -17.37 -0.21 0.48 16 24 C -0.22 -2.92 5.89 -104.98 -0.62 -3.54 16 25 C -0.05 -0.73 5.85 -27.61 -0.16 -0.89 16 26 C -0.04 -0.78 4.77 -104.62 -0.50 -1.28 16 27 C -0.10 -1.95 8.87 -39.58 -0.35 -2.30 16 28 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 29 C -0.15 -2.43 10.05 -39.58 -0.40 -2.83 16 30 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 31 C -0.14 -2.67 9.13 -39.58 -0.36 -3.03 16 32 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 33 H 0.08 1.40 7.80 -51.93 -0.41 0.99 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.39 3.99 8.60 -40.82 -0.35 3.64 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.12 2.25 7.77 -52.49 -0.41 1.84 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 47 H 0.11 2.15 6.96 -52.49 -0.37 1.79 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -35.77 382.02 -10.86 -46.63 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.12 Total: 7.83 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -5.13 Total: -20.63 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 1.15 Total: -45.96 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.60 Total: 18.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.77 -10.86 -46.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356119548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.069 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds