Wall clock time and date at job start Tue Mar 31 2020 22:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86806 * 119.99643 * 2 1 4 4 H 1.48495 * 109.46980 * 240.00060 * 3 2 1 5 5 H 1.48498 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47040 * 120.00118 * 3 2 1 7 7 C 1.38947 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99947 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00197 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99695 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00338 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47330 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00140 * 180.02562 * 13 12 10 15 15 O 1.21591 * 120.00222 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00273 * 180.02562 * 14 13 12 17 17 C 1.47431 * 125.64579 * 0.03748 * 16 14 13 18 18 C 1.55392 * 104.87127 * 204.10006 * 17 16 14 19 19 C 1.55157 * 101.36576 * 323.01456 * 18 17 16 20 20 H 1.09002 * 110.72219 * 277.04408 * 19 18 17 21 21 N 1.46505 * 110.71610 * 153.94856 * 19 18 17 22 22 C 1.34779 * 119.99500 * 157.44358 * 21 19 18 23 23 O 1.21587 * 120.00037 * 359.97438 * 22 21 19 24 24 N 1.34773 * 119.99698 * 180.02562 * 22 21 19 25 25 C 1.46502 * 120.00056 * 179.97438 * 24 22 21 26 26 C 1.52997 * 117.49850 * 223.74543 * 25 24 22 27 27 C 1.53001 * 117.50133 * 155.08416 * 25 24 22 28 28 C 1.47019 * 125.65277 * 179.97438 * 16 14 13 29 29 H 0.96992 * 120.00357 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00571 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47095 * 59.99848 * 12 10 9 32 32 H 1.09004 * 109.47106 * 300.00335 * 12 10 9 33 33 H 0.96995 * 119.99945 * 359.97438 * 13 12 10 34 34 H 1.08999 * 110.36190 * 322.93058 * 17 16 14 35 35 H 1.08998 * 110.36491 * 85.14737 * 17 16 14 36 36 H 1.09004 * 111.18705 * 204.97719 * 18 17 16 37 37 H 1.09001 * 111.02055 * 80.98222 * 18 17 16 38 38 H 0.96996 * 120.00388 * 337.43707 * 21 19 18 39 39 H 0.97001 * 120.00018 * 359.97438 * 24 22 21 40 40 H 1.08995 * 115.55046 * 9.41171 * 25 24 22 41 41 H 1.08997 * 117.49921 * 359.97438 * 26 25 24 42 42 H 1.09005 * 117.50115 * 145.01729 * 26 25 24 43 43 H 1.08997 * 117.50020 * 214.97571 * 27 25 24 44 44 H 1.09001 * 117.49806 * 359.97438 * 27 25 24 45 45 H 1.09001 * 109.88251 * 59.55144 * 28 16 14 46 46 H 1.09003 * 110.01193 * 298.46519 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3236 -2.3905 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5576 0.0010 12 6 1.2441 -4.8629 0.0011 13 7 2.1962 -5.9763 0.0016 14 6 1.7470 -7.2470 0.0017 15 8 0.5516 -7.4693 0.0018 16 7 2.6229 -8.2714 0.0026 17 6 4.0918 -8.1459 0.0045 18 6 4.6067 -9.4778 -0.6083 19 6 3.5930 -10.4960 -0.0223 20 1 3.8835 -10.7930 0.9854 21 7 3.4746 -11.6687 -0.8924 22 6 3.0315 -12.8383 -0.3903 23 8 2.7304 -12.9202 0.7849 24 7 2.9230 -13.9172 -1.1906 25 6 2.4419 -15.1888 -0.6447 26 6 3.1864 -16.4607 -1.0554 27 6 1.7917 -16.1744 -1.6177 28 6 2.2717 -9.6991 0.0033 29 1 -0.4850 0.8399 -0.0004 30 1 0.3536 -2.3907 0.0005 31 1 0.6171 -4.9208 -0.8886 32 1 0.6177 -4.9204 0.8914 33 1 3.1498 -5.7991 0.0012 34 1 4.4010 -7.3011 -0.6110 35 1 4.4611 -8.0276 1.0232 36 1 5.6203 -9.6993 -0.2742 37 1 4.5520 -9.4544 -1.6966 38 1 3.7151 -11.6033 -1.8298 39 1 3.1636 -13.8519 -2.1280 40 1 2.0426 -15.1443 0.3685 41 1 4.0339 -16.3516 -1.7321 42 1 3.2765 -17.2533 -0.3125 43 1 0.9649 -16.7787 -1.2444 44 1 1.7215 -15.8767 -2.6639 45 1 1.6791 -9.9355 -0.8804 46 1 1.7082 -9.9442 0.9037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358306623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:19 Heat of formation + Delta-G solvation = -56.542085 kcal Electronic energy + Delta-G solvation = -28302.323222 eV Core-core repulsion = 24035.254339 eV Total energy + Delta-G solvation = -4267.068883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74712 -39.97476 -38.50590 -37.88645 -37.15313 -34.53299 -34.40524 -33.63912 -33.06266 -31.37804 -30.65662 -28.86734 -27.21622 -24.67635 -23.61469 -22.89788 -22.78435 -21.44510 -21.17797 -19.79756 -19.59705 -19.01318 -18.33920 -17.84321 -17.24011 -16.60443 -15.85001 -15.65265 -15.51900 -15.30189 -15.13295 -14.77322 -14.69018 -14.30322 -14.14393 -13.99879 -13.62074 -13.40242 -13.20102 -13.03586 -12.68503 -12.31366 -12.17733 -12.08963 -12.01123 -11.84991 -11.75840 -11.62194 -11.21451 -11.09911 -10.99858 -10.59125 -10.50412 -10.30996 -10.03550 -9.61993 -9.61613 -9.11415 -8.93662 -8.61864 -8.44781 -8.09169 -6.50436 -3.92635 2.07755 2.65024 2.74361 3.14123 3.21990 3.25707 3.37627 3.46981 3.69305 3.75970 4.00153 4.10848 4.17628 4.27680 4.39310 4.45836 4.49656 4.68310 4.88250 4.92044 5.03173 5.12026 5.18151 5.26851 5.37304 5.40370 5.41896 5.55999 5.59500 5.65918 5.72601 5.91745 6.01948 6.04688 6.06668 6.09330 6.22401 6.47442 6.76034 7.13228 7.46454 7.54319 7.92897 8.16419 8.18364 8.46063 8.78390 9.05243 9.40322 9.88218 10.66339 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040765 B = 0.001575 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.707217 B =17776.868887 C =18195.516419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.722 5.722 14 C 0.723 3.277 15 O -0.593 6.593 16 N -0.638 5.638 17 C 0.099 3.901 18 C -0.136 4.136 19 C 0.153 3.847 20 H 0.109 0.891 21 N -0.734 5.734 22 C 0.709 3.291 23 O -0.583 6.583 24 N -0.718 5.718 25 C 0.101 3.899 26 C -0.196 4.196 27 C -0.191 4.191 28 C 0.118 3.882 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.399 0.601 39 H 0.397 0.603 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.933 -28.671 -5.100 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.380 5.380 14 C 0.425 3.575 15 O -0.471 6.471 16 N -0.378 5.378 17 C -0.024 4.024 18 C -0.175 4.175 19 C 0.047 3.953 20 H 0.127 0.873 21 N -0.389 5.389 22 C 0.409 3.591 23 O -0.460 6.460 24 N -0.371 5.371 25 C -0.006 4.006 26 C -0.235 4.235 27 C -0.230 4.230 28 C -0.007 4.007 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.244 0.756 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.233 0.767 39 H 0.231 0.769 40 H 0.157 0.843 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.086 0.914 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.351 -28.589 -3.983 29.787 hybrid contribution 0.433 0.979 -1.045 1.496 sum 7.784 -27.610 -5.028 29.123 Atomic orbital electron populations 1.69607 1.06000 1.28626 1.49203 1.25321 0.95656 0.99903 0.96776 0.85871 0.78770 0.80182 0.79121 1.19815 1.20860 1.19784 1.19678 0.93431 0.82019 1.48420 0.87733 1.41776 1.09500 1.04422 1.62614 1.19744 0.88281 0.84987 0.85531 1.90482 1.13750 1.86874 1.57443 1.20801 0.91222 0.84807 1.03203 1.44771 1.11291 1.03084 1.78805 1.15320 0.84182 0.79931 0.78091 1.90920 1.13612 1.83874 1.58692 1.47356 1.05776 1.05207 1.79480 1.22360 0.80480 0.98063 1.01533 1.23145 0.99187 0.93650 1.01471 1.21845 0.94373 0.83584 0.95503 0.87293 1.45025 1.71485 1.09018 1.13374 1.15855 0.78114 0.80074 0.85066 1.90958 1.55886 1.84141 1.14985 1.44456 1.71157 1.09098 1.12380 1.21442 1.01448 0.78910 0.98786 1.23472 0.95566 1.00119 1.04340 1.23421 0.96792 1.03102 0.99660 1.22113 0.96712 0.78893 1.02960 0.91537 0.76994 0.90004 0.89950 0.75558 0.89879 0.90730 0.88833 0.89833 0.76691 0.76860 0.84252 0.88578 0.87934 0.87761 0.88486 0.91380 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.31 9.68 -14.94 -0.14 -8.45 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.64 5.29 -10.97 -0.06 -13.70 16 10 C 0.43 9.89 7.85 -10.99 -0.09 9.80 16 11 O -0.60 -15.24 15.24 5.55 0.08 -15.15 16 12 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 13 N -0.72 -12.61 5.49 -66.41 -0.36 -12.97 16 14 C 0.72 12.55 8.49 -86.92 -0.74 11.81 16 15 O -0.59 -12.36 16.67 5.29 0.09 -12.27 16 16 N -0.64 -8.39 3.33 -175.93 -0.59 -8.98 16 17 C 0.10 0.92 6.59 -2.26 -0.01 0.91 16 18 C -0.14 -0.85 6.74 -24.32 -0.16 -1.01 16 19 C 0.15 1.27 3.26 -66.09 -0.22 1.05 16 20 H 0.11 1.02 7.62 -51.93 -0.40 0.63 16 21 N -0.73 -5.01 5.12 -56.88 -0.29 -5.30 16 22 C 0.71 6.61 8.57 -86.92 -0.74 5.87 16 23 O -0.58 -8.01 15.59 5.29 0.08 -7.93 16 24 N -0.72 -4.53 5.57 -58.68 -0.33 -4.86 16 25 C 0.10 0.65 6.43 -67.93 -0.44 0.21 16 26 C -0.20 -0.88 10.46 -26.69 -0.28 -1.16 16 27 C -0.19 -0.84 10.46 -26.69 -0.28 -1.12 16 28 C 0.12 1.39 6.62 -3.07 -0.02 1.37 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.41 6.84 5.91 -40.82 -0.24 6.60 16 34 H 0.08 0.78 7.30 -51.93 -0.38 0.40 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.44 8.01 -51.93 -0.42 0.03 16 38 H 0.40 1.55 8.55 -40.82 -0.35 1.20 16 39 H 0.40 1.35 8.84 -40.82 -0.36 0.99 16 40 H 0.14 1.15 7.40 -51.93 -0.38 0.76 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -35.61 391.33 -9.60 -45.21 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -6.58 Total: 15.47 kcal Atomic # 6 Polarization: 25.54 SS G_CDS: -3.25 Total: 22.29 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.90 Total: -68.98 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: 0.26 Total: -35.36 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.61 -9.60 -45.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358306623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.329 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds