Wall clock time and date at job start Tue Mar 31 2020 22:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86806 * 119.99643 * 2 1 4 4 H 1.48495 * 109.46980 * 240.00060 * 3 2 1 5 5 H 1.48498 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47040 * 120.00118 * 3 2 1 7 7 C 1.38947 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99947 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00197 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99695 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00338 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47330 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00140 * 180.02562 * 13 12 10 15 15 O 1.21591 * 120.00222 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00273 * 180.02562 * 14 13 12 17 17 C 1.47431 * 125.64579 * 0.03748 * 16 14 13 18 18 C 1.55392 * 104.87127 * 204.10006 * 17 16 14 19 19 C 1.55157 * 101.36576 * 323.01456 * 18 17 16 20 20 H 1.09002 * 110.72219 * 277.04408 * 19 18 17 21 21 N 1.46505 * 110.71610 * 153.94856 * 19 18 17 22 22 C 1.34779 * 119.99500 * 157.44358 * 21 19 18 23 23 O 1.21587 * 120.00037 * 359.97438 * 22 21 19 24 24 N 1.34773 * 119.99698 * 180.02562 * 22 21 19 25 25 C 1.46502 * 120.00056 * 179.97438 * 24 22 21 26 26 C 1.52997 * 117.49850 * 223.74543 * 25 24 22 27 27 C 1.53001 * 117.50133 * 155.08416 * 25 24 22 28 28 C 1.47019 * 125.65277 * 179.97438 * 16 14 13 29 29 H 0.96992 * 120.00357 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00571 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47095 * 59.99848 * 12 10 9 32 32 H 1.09004 * 109.47106 * 300.00335 * 12 10 9 33 33 H 0.96995 * 119.99945 * 359.97438 * 13 12 10 34 34 H 1.08999 * 110.36190 * 322.93058 * 17 16 14 35 35 H 1.08998 * 110.36491 * 85.14737 * 17 16 14 36 36 H 1.09004 * 111.18705 * 204.97719 * 18 17 16 37 37 H 1.09001 * 111.02055 * 80.98222 * 18 17 16 38 38 H 0.96996 * 120.00388 * 337.43707 * 21 19 18 39 39 H 0.97001 * 120.00018 * 359.97438 * 24 22 21 40 40 H 1.08995 * 115.55046 * 9.41171 * 25 24 22 41 41 H 1.08997 * 117.49921 * 359.97438 * 26 25 24 42 42 H 1.09005 * 117.50115 * 145.01729 * 26 25 24 43 43 H 1.08997 * 117.50020 * 214.97571 * 27 25 24 44 44 H 1.09001 * 117.49806 * 359.97438 * 27 25 24 45 45 H 1.09001 * 109.88251 * 59.55144 * 28 16 14 46 46 H 1.09003 * 110.01193 * 298.46519 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3236 -2.3905 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5576 0.0010 12 6 1.2441 -4.8629 0.0011 13 7 2.1962 -5.9763 0.0016 14 6 1.7470 -7.2470 0.0017 15 8 0.5516 -7.4693 0.0018 16 7 2.6229 -8.2714 0.0026 17 6 4.0918 -8.1459 0.0045 18 6 4.6067 -9.4778 -0.6083 19 6 3.5930 -10.4960 -0.0223 20 1 3.8835 -10.7930 0.9854 21 7 3.4746 -11.6687 -0.8924 22 6 3.0315 -12.8383 -0.3903 23 8 2.7304 -12.9202 0.7849 24 7 2.9230 -13.9172 -1.1906 25 6 2.4419 -15.1888 -0.6447 26 6 3.1864 -16.4607 -1.0554 27 6 1.7917 -16.1744 -1.6177 28 6 2.2717 -9.6991 0.0033 29 1 -0.4850 0.8399 -0.0004 30 1 0.3536 -2.3907 0.0005 31 1 0.6171 -4.9208 -0.8886 32 1 0.6177 -4.9204 0.8914 33 1 3.1498 -5.7991 0.0012 34 1 4.4010 -7.3011 -0.6110 35 1 4.4611 -8.0276 1.0232 36 1 5.6203 -9.6993 -0.2742 37 1 4.5520 -9.4544 -1.6966 38 1 3.7151 -11.6033 -1.8298 39 1 3.1636 -13.8519 -2.1280 40 1 2.0426 -15.1443 0.3685 41 1 4.0339 -16.3516 -1.7321 42 1 3.2765 -17.2533 -0.3125 43 1 0.9649 -16.7787 -1.2444 44 1 1.7215 -15.8767 -2.6639 45 1 1.6791 -9.9355 -0.8804 46 1 1.7082 -9.9442 0.9037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358306623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:19 Heat of formation + Delta-G solvation = -85.533654 kcal Electronic energy + Delta-G solvation = -28303.580391 eV Core-core repulsion = 24035.254339 eV Total energy + Delta-G solvation = -4268.326052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66112 -41.04256 -40.13180 -38.88256 -37.90418 -36.24931 -35.47795 -35.18967 -33.72647 -33.35656 -31.51681 -29.92664 -28.63407 -26.43171 -24.68290 -23.41507 -23.23343 -22.10035 -21.91688 -21.36985 -21.03949 -20.11724 -19.74063 -19.22643 -17.99098 -17.50219 -17.41471 -17.02033 -16.63470 -16.53544 -16.15650 -15.97363 -15.81281 -15.67048 -15.29671 -15.19826 -14.83490 -14.50953 -14.16709 -13.93561 -13.71688 -13.63854 -13.52163 -13.38674 -12.89666 -12.86471 -12.77693 -12.46418 -12.45745 -12.31709 -12.12840 -11.89276 -11.55141 -11.48504 -11.46072 -11.36398 -10.55568 -10.37968 -10.35065 -10.08989 -9.63057 -9.58631 -8.49695 -6.00215 1.26627 1.39147 1.44195 1.55037 1.67555 1.89457 2.01335 2.03438 2.28910 2.85176 3.04055 3.16473 3.17312 3.17714 3.44458 3.55560 3.84958 4.05124 4.08956 4.11004 4.15800 4.20213 4.28783 4.41404 4.43802 4.59817 4.68344 4.72253 4.80022 4.85273 4.94588 5.03297 5.06351 5.22297 5.24002 5.27223 5.39294 5.44324 5.55194 5.90906 5.92606 5.96223 6.48477 6.85845 7.03846 7.03985 7.38941 7.47159 7.52952 7.94441 8.66911 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.040765 B = 0.001575 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.707217 B =17776.868887 C =18195.516419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.558 5.558 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.141 3.859 13 N -0.719 5.719 14 C 0.719 3.281 15 O -0.633 6.633 16 N -0.633 5.633 17 C 0.089 3.911 18 C -0.115 4.115 19 C 0.164 3.836 20 H 0.099 0.901 21 N -0.718 5.718 22 C 0.703 3.297 23 O -0.633 6.633 24 N -0.703 5.703 25 C 0.071 3.929 26 C -0.183 4.183 27 C -0.177 4.177 28 C 0.117 3.883 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.411 0.589 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.417 0.583 39 H 0.414 0.586 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 -29.478 -6.554 31.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.510 6.510 12 C 0.012 3.988 13 N -0.377 5.377 14 C 0.421 3.579 15 O -0.515 6.515 16 N -0.371 5.371 17 C -0.034 4.034 18 C -0.153 4.153 19 C 0.057 3.943 20 H 0.117 0.883 21 N -0.374 5.374 22 C 0.403 3.597 23 O -0.514 6.514 24 N -0.357 5.357 25 C -0.036 4.036 26 C -0.222 4.222 27 C -0.216 4.216 28 C -0.008 4.008 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.249 0.751 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.254 0.746 39 H 0.251 0.749 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.079 0.921 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.089 -29.448 -5.501 31.306 hybrid contribution -0.104 1.116 -0.587 1.265 sum 8.984 -28.332 -6.088 30.340 Atomic orbital electron populations 1.69679 1.07055 1.29697 1.49177 1.26138 0.96512 1.02700 0.95721 0.84914 0.77692 0.76172 0.79122 1.19392 1.19737 1.19487 1.19726 0.93041 0.83476 1.50521 0.89384 1.41822 1.09590 1.04569 1.63370 1.20319 0.88106 0.85755 0.83648 1.90457 1.15010 1.87506 1.58030 1.20605 0.91020 0.83157 1.04010 1.44650 1.11114 1.02873 1.79090 1.15448 0.84152 0.80362 0.77971 1.90885 1.15586 1.84491 1.60559 1.47373 1.07233 1.04769 1.77742 1.22699 0.77865 1.00161 1.02636 1.23131 0.99584 0.90334 1.02282 1.21649 0.92882 0.83947 0.95843 0.88258 1.44798 1.70706 1.07802 1.14098 1.16096 0.77913 0.81043 0.84677 1.90928 1.58083 1.85013 1.17358 1.44289 1.70241 1.08312 1.12850 1.21437 1.03870 0.79678 0.98567 1.23522 0.96008 0.98433 1.04190 1.23489 0.96955 1.01422 0.99697 1.22194 0.98617 0.78629 1.01323 0.91087 0.76733 0.89018 0.89257 0.75071 0.89520 0.89883 0.85868 0.88030 0.74567 0.74907 0.86854 0.87423 0.87541 0.87330 0.87206 0.92061 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 3 Si 1.00 41.51 29.55 68.60 2.03 43.54 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.12 5.29 -306.99 -1.62 -29.74 16 10 C 0.43 20.16 7.85 87.66 0.69 20.85 16 11 O -0.62 -31.79 15.24 -3.07 -0.05 -31.84 16 12 C 0.14 5.35 6.15 85.63 0.53 5.87 16 13 N -0.72 -24.93 5.49 -482.29 -2.65 -27.58 16 14 C 0.72 25.01 8.49 179.06 1.52 26.53 16 15 O -0.63 -26.89 16.67 -4.00 -0.07 -26.96 16 16 N -0.63 -16.36 3.33 -828.77 -2.76 -19.12 16 17 C 0.09 1.48 6.59 87.02 0.57 2.06 16 18 C -0.12 -1.07 6.74 32.16 0.22 -0.86 16 19 C 0.16 2.50 3.26 46.18 0.15 2.65 16 20 H 0.10 1.80 7.62 -2.39 -0.02 1.78 16 21 N -0.72 -8.65 5.12 -452.13 -2.32 -10.97 16 22 C 0.70 12.79 8.57 179.05 1.53 14.32 16 23 O -0.63 -18.02 15.59 -3.99 -0.06 -18.08 16 24 N -0.70 -8.11 5.57 -457.82 -2.55 -10.66 16 25 C 0.07 0.89 6.43 44.99 0.29 1.18 16 26 C -0.18 -1.34 10.46 30.62 0.32 -1.02 16 27 C -0.18 -1.27 10.46 30.62 0.32 -0.94 16 28 C 0.12 2.77 6.62 86.73 0.57 3.35 16 29 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 33 H 0.41 13.59 5.91 -92.71 -0.55 13.04 16 34 H 0.09 1.44 7.30 -2.39 -0.02 1.42 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.10 0.66 8.01 -2.39 -0.02 0.64 16 38 H 0.42 2.07 8.55 -92.71 -0.79 1.28 16 39 H 0.41 1.89 8.84 -92.71 -0.82 1.07 16 40 H 0.11 2.02 7.40 -2.39 -0.02 2.00 16 41 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 1.52 8.03 -2.39 -0.02 1.51 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -79.00 391.33 -3.59 -82.60 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -1.83 Total: 41.09 kcal Atomic # 6 Polarization: 48.18 SS G_CDS: 7.99 Total: 56.18 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -11.61 Total: -146.53 kcal Atomic # 8 Polarization: -76.70 SS G_CDS: -0.18 Total: -76.88 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -79.00 -3.59 -82.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358306623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.938 kcal (2) G-P(sol) polarization free energy of solvation -79.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds