Wall clock time and date at job start Tue Mar 31 2020 22:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48497 * 109.47344 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46982 * 120.00094 * 3 2 1 6 6 H 1.48496 * 109.47263 * 239.99536 * 3 2 1 7 7 C 1.37871 * 119.99865 * 180.27438 * 2 1 3 8 8 H 1.08004 * 120.00020 * 186.28922 * 7 2 1 9 9 C 1.50700 * 120.00278 * 6.29736 * 7 2 1 10 10 H 1.08998 * 109.47312 * 30.30075 * 9 7 2 11 11 C 1.52999 * 109.47616 * 150.30886 * 9 7 2 12 12 C 1.50700 * 109.46629 * 294.05384 * 11 9 7 13 13 O 1.21275 * 120.00181 * 359.97438 * 12 11 9 14 14 N 1.34781 * 120.00103 * 179.97438 * 12 11 9 15 15 C 1.46494 * 120.00263 * 180.02562 * 14 12 11 16 16 H 1.08998 * 109.42664 * 34.99812 * 15 14 12 17 17 C 1.53027 * 109.42553 * 154.88916 * 15 14 12 18 18 C 1.53386 * 109.72113 * 191.81018 * 17 15 14 19 19 C 1.50879 * 108.19621 * 309.46985 * 18 17 15 20 20 C 1.34574 * 128.32601 * 196.57068 * 19 18 17 21 21 N 1.35193 * 107.61910 * 179.85744 * 20 19 18 22 22 H 0.97003 * 126.00758 * 179.97438 * 21 20 19 23 23 N 1.40318 * 107.99294 * 0.02906 * 21 20 19 24 24 C 1.30130 * 108.12027 * 0.05045 * 23 21 20 25 25 C 1.50925 * 128.30171 * 179.77045 * 24 23 21 26 26 C 1.50703 * 109.46883 * 270.30358 * 9 7 2 27 27 C 1.38234 * 120.00036 * 304.22546 * 26 9 7 28 28 C 1.38241 * 119.99663 * 179.80681 * 27 26 9 29 29 C 1.38237 * 119.99800 * 0.42024 * 28 27 26 30 30 C 1.38227 * 120.00446 * 359.80558 * 29 28 27 31 31 C 1.38237 * 119.99806 * 124.49213 * 26 9 7 32 32 H 0.96993 * 119.99759 * 174.79109 * 1 2 3 33 33 H 1.09001 * 109.47092 * 54.05095 * 11 9 7 34 34 H 1.09000 * 109.47719 * 174.05503 * 11 9 7 35 35 H 0.96999 * 119.99699 * 0.02562 * 14 12 11 36 36 H 1.08998 * 109.43127 * 311.88842 * 17 15 14 37 37 H 1.09002 * 109.43060 * 71.78969 * 17 15 14 38 38 H 1.09008 * 109.71647 * 69.14610 * 18 17 15 39 39 H 1.09004 * 109.71862 * 189.74390 * 18 17 15 40 40 H 1.07995 * 126.19361 * 359.83719 * 20 19 18 41 41 H 1.09004 * 109.75661 * 77.14494 * 25 24 23 42 42 H 1.09005 * 109.66843 * 316.50925 * 25 24 23 43 43 H 1.07994 * 120.00247 * 359.97438 * 27 26 9 44 44 H 1.08002 * 119.99710 * 180.20579 * 28 27 26 45 45 H 1.08000 * 119.99700 * 179.79111 * 29 28 27 46 46 H 1.08000 * 120.00266 * 179.97438 * 30 29 28 47 47 H 1.08006 * 120.00144 * 359.97438 * 31 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2124 7 6 2.0045 -1.1940 -0.0057 8 1 3.0797 -1.1973 0.0967 9 6 1.2579 -2.4945 -0.1551 10 1 0.3610 -2.3320 -0.7529 11 6 2.1549 -3.5208 -0.8499 12 6 2.4260 -3.0754 -2.2638 13 8 1.9483 -2.0394 -2.6753 14 7 3.1993 -3.8283 -3.0711 15 6 3.4633 -3.3951 -4.4454 16 1 3.5357 -2.3079 -4.4752 17 6 4.7807 -4.0064 -4.9276 18 6 5.2138 -3.3355 -6.2372 19 6 4.0430 -3.3593 -7.1885 20 6 4.0460 -3.1678 -8.5205 21 7 2.7705 -3.2835 -8.9534 22 1 2.4693 -3.1935 -9.8711 23 7 1.9585 -3.5555 -7.8419 24 6 2.7185 -3.5995 -6.7865 25 6 2.3167 -3.8549 -5.3543 26 6 0.8676 -3.0088 1.2066 27 6 1.8349 -3.2066 2.1741 28 6 1.4762 -3.6747 3.4245 29 6 0.1514 -3.9531 3.7044 30 6 -0.8152 -3.7598 2.7354 31 6 -0.4571 -3.2881 1.4863 32 1 -0.4849 -0.8365 -0.0763 33 1 3.0973 -3.6053 -0.3086 34 1 1.6557 -4.4897 -0.8636 35 1 3.5810 -4.6571 -2.7421 36 1 5.5497 -3.8539 -4.1704 37 1 4.6445 -5.0746 -5.0961 38 1 5.5084 -2.3043 -6.0422 39 1 6.0519 -3.8816 -6.6704 40 1 4.9107 -2.9590 -9.1328 41 1 2.1348 -4.9195 -5.2069 42 1 1.4135 -3.2912 -5.1206 43 1 2.8703 -2.9930 1.9541 44 1 2.2315 -3.8260 4.1814 45 1 -0.1283 -4.3220 4.6801 46 1 -1.8502 -3.9777 2.9540 47 1 -1.2124 -3.1372 0.7291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373511590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:38 Heat of formation + Delta-G solvation = 46.663478 kcal Electronic energy + Delta-G solvation = -28796.326083 eV Core-core repulsion = 24944.581791 eV Total energy + Delta-G solvation = -3851.744291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55277 -39.30269 -38.36538 -36.65333 -34.22784 -33.17958 -32.20500 -31.30117 -30.08824 -29.82159 -28.74047 -28.34714 -25.23339 -24.05467 -22.85852 -21.74181 -21.51643 -21.11355 -20.19121 -19.49905 -18.92932 -17.70107 -16.87002 -16.28389 -16.00755 -15.68985 -15.22990 -14.79909 -14.49244 -14.16206 -13.89723 -13.86766 -13.68191 -13.61520 -13.20836 -13.01827 -12.87411 -12.63219 -12.38102 -12.28039 -12.01193 -11.84132 -11.60268 -11.44944 -11.31442 -10.91935 -10.81981 -10.67523 -10.40687 -10.39380 -10.10409 -10.01292 -9.61685 -9.45919 -8.98734 -8.64138 -8.58215 -8.53257 -8.22249 -8.11495 -7.60481 -6.19332 -3.86882 1.78598 2.21486 2.27429 2.64334 2.72372 3.49939 3.53077 3.58703 3.63098 3.73621 4.42487 4.62361 4.63933 4.70061 4.78961 5.00250 5.09572 5.24249 5.39423 5.44864 5.51620 5.54627 5.61809 5.65752 5.67427 5.72703 5.78744 5.85692 5.97652 6.03152 6.03731 6.11114 6.13773 6.19021 6.31483 6.34309 6.45353 6.56594 6.72818 6.81913 6.93838 6.96150 7.16118 7.23463 7.25249 7.41254 7.58862 7.75374 7.88569 8.08042 8.26661 8.54609 9.01057 9.07029 9.82455 11.21102 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002895 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.580473 B = 9668.190630 C =10602.747216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.033 3.967 3 Si 1.062 2.938 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.567 4.567 8 H 0.045 0.955 9 C 0.072 3.928 10 H 0.051 0.949 11 C -0.117 4.117 12 C 0.514 3.486 13 O -0.496 6.496 14 N -0.745 5.745 15 C 0.153 3.847 16 H 0.091 0.909 17 C -0.124 4.124 18 C -0.036 4.036 19 C -0.238 4.238 20 C 0.058 3.942 21 N -0.488 5.488 22 H 0.437 0.563 23 N -0.288 5.288 24 C 0.094 3.906 25 C -0.051 4.051 26 C -0.030 4.030 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.153 4.153 30 C -0.124 4.124 31 C -0.130 4.130 32 H 0.270 0.730 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.393 0.607 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.175 0.825 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.196 -11.995 -11.083 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.173 4.173 3 Si 0.891 3.109 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.605 4.605 8 H 0.063 0.937 9 C 0.053 3.947 10 H 0.069 0.931 11 C -0.158 4.158 12 C 0.300 3.700 13 O -0.367 6.367 14 N -0.400 5.400 15 C 0.047 3.953 16 H 0.109 0.891 17 C -0.162 4.162 18 C -0.075 4.075 19 C -0.249 4.249 20 C -0.087 4.087 21 N -0.196 5.196 22 H 0.281 0.719 23 N -0.110 5.110 24 C -0.075 4.075 25 C -0.092 4.092 26 C -0.031 4.031 27 C -0.126 4.126 28 C -0.148 4.148 29 C -0.172 4.172 30 C -0.143 4.143 31 C -0.148 4.148 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.227 0.773 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.192 0.808 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.133 0.867 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.437 -9.631 -11.745 17.375 hybrid contribution 1.062 -1.823 -0.201 2.119 sum 9.499 -11.453 -11.946 19.082 Atomic orbital electron populations 1.70758 1.06888 1.31137 1.45349 1.25557 0.96422 1.02171 0.93154 0.83655 0.75080 0.75972 0.76179 1.21000 1.21785 1.21520 1.21518 0.93732 0.90619 1.54598 0.93682 1.17863 0.96178 0.92948 0.87702 0.93105 1.21688 1.02056 0.99791 0.92239 1.20883 0.77716 0.83753 0.87619 1.90756 1.48222 1.22465 1.75276 1.46221 1.54694 1.26777 1.12257 1.20729 0.92556 1.00790 0.81186 0.89088 1.21825 0.96820 1.00293 0.97227 1.19927 0.93985 1.01078 0.92489 1.20154 0.95964 1.15197 0.93631 1.22027 0.88980 1.02063 0.95674 1.46339 1.04967 1.58750 1.09557 0.71900 1.77065 1.17633 1.23474 0.92870 1.22300 0.91684 0.98271 0.95270 1.20559 1.00292 1.02298 0.86035 1.20839 0.92272 0.90922 0.99069 1.20916 0.99693 0.99200 0.92815 1.21011 0.95792 1.01106 0.96876 1.20816 0.93554 1.04135 0.98659 1.20964 0.98339 1.00858 0.94099 1.21075 0.96477 1.00601 0.96681 0.91860 0.90283 0.91669 0.77344 0.90617 0.91370 0.90864 0.90921 0.80809 0.89815 0.89227 0.86735 0.87482 0.87627 0.87495 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.83 13.63 55.43 0.76 -27.07 16 2 C 0.03 0.94 5.45 -17.82 -0.10 0.85 16 3 Si 1.06 26.45 29.91 -169.99 -5.08 21.37 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.57 -15.38 6.41 -34.44 -0.22 -15.60 16 8 H 0.04 1.22 7.82 -52.48 -0.41 0.81 16 9 C 0.07 1.72 1.31 -92.92 -0.12 1.60 16 10 H 0.05 1.37 6.24 -51.93 -0.32 1.05 16 11 C -0.12 -2.23 4.94 -27.88 -0.14 -2.37 16 12 C 0.51 9.96 7.55 -10.98 -0.08 9.87 16 13 O -0.50 -12.25 14.68 5.56 0.08 -12.17 16 14 N -0.75 -10.50 5.08 -53.61 -0.27 -10.77 16 15 C 0.15 2.06 2.40 -67.73 -0.16 1.90 16 16 H 0.09 1.51 7.53 -51.93 -0.39 1.12 16 17 C -0.12 -1.20 5.33 -26.52 -0.14 -1.34 16 18 C -0.04 -0.33 6.28 -27.60 -0.17 -0.50 16 19 C -0.24 -2.67 5.89 -104.99 -0.62 -3.29 16 20 C 0.06 0.53 11.95 -17.37 -0.21 0.32 16 21 N -0.49 -4.94 7.37 30.35 0.22 -4.72 16 22 H 0.44 2.87 8.96 -182.43 -1.64 1.24 16 23 N -0.29 -4.12 12.68 33.74 0.43 -3.69 16 24 C 0.09 1.30 7.10 -82.36 -0.58 0.71 16 25 C -0.05 -0.72 5.88 -27.58 -0.16 -0.88 16 26 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 27 C -0.11 -2.20 8.88 -39.58 -0.35 -2.55 16 28 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 29 C -0.15 -2.67 10.05 -39.59 -0.40 -3.07 16 30 C -0.12 -2.30 10.05 -39.59 -0.40 -2.70 16 31 C -0.13 -2.73 9.67 -39.58 -0.38 -3.12 16 32 H 0.27 8.20 6.68 -40.82 -0.27 7.93 16 33 H 0.08 1.39 7.86 -51.93 -0.41 0.98 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.39 4.20 8.60 -40.82 -0.35 3.85 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.11 2.26 7.80 -52.49 -0.41 1.85 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 45 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.11 2.29 7.95 -52.48 -0.42 1.87 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -36.10 387.22 -11.23 -47.33 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.06 Total: 7.95 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -5.14 Total: -24.06 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 1.13 Total: -46.25 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -5.08 Total: 21.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.10 -11.23 -47.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373511590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.994 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds