Wall clock time and date at job start Tue Mar 31 2020 22:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48497 * 109.47344 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46982 * 120.00094 * 3 2 1 6 6 H 1.48496 * 109.47263 * 239.99536 * 3 2 1 7 7 C 1.37871 * 119.99865 * 180.27438 * 2 1 3 8 8 H 1.08004 * 120.00020 * 186.28922 * 7 2 1 9 9 C 1.50700 * 120.00278 * 6.29736 * 7 2 1 10 10 H 1.08998 * 109.47312 * 30.30075 * 9 7 2 11 11 C 1.52999 * 109.47616 * 150.30886 * 9 7 2 12 12 C 1.50700 * 109.46629 * 294.05384 * 11 9 7 13 13 O 1.21275 * 120.00181 * 359.97438 * 12 11 9 14 14 N 1.34781 * 120.00103 * 179.97438 * 12 11 9 15 15 C 1.46494 * 120.00263 * 180.02562 * 14 12 11 16 16 H 1.08998 * 109.42664 * 34.99812 * 15 14 12 17 17 C 1.53027 * 109.42553 * 154.88916 * 15 14 12 18 18 C 1.53386 * 109.72113 * 191.81018 * 17 15 14 19 19 C 1.50879 * 108.19621 * 309.46985 * 18 17 15 20 20 C 1.34574 * 128.32601 * 196.57068 * 19 18 17 21 21 N 1.35193 * 107.61910 * 179.85744 * 20 19 18 22 22 H 0.97003 * 126.00758 * 179.97438 * 21 20 19 23 23 N 1.40318 * 107.99294 * 0.02906 * 21 20 19 24 24 C 1.30130 * 108.12027 * 0.05045 * 23 21 20 25 25 C 1.50925 * 128.30171 * 179.77045 * 24 23 21 26 26 C 1.50703 * 109.46883 * 270.30358 * 9 7 2 27 27 C 1.38234 * 120.00036 * 304.22546 * 26 9 7 28 28 C 1.38241 * 119.99663 * 179.80681 * 27 26 9 29 29 C 1.38237 * 119.99800 * 0.42024 * 28 27 26 30 30 C 1.38227 * 120.00446 * 359.80558 * 29 28 27 31 31 C 1.38237 * 119.99806 * 124.49213 * 26 9 7 32 32 H 0.96993 * 119.99759 * 174.79109 * 1 2 3 33 33 H 1.09001 * 109.47092 * 54.05095 * 11 9 7 34 34 H 1.09000 * 109.47719 * 174.05503 * 11 9 7 35 35 H 0.96999 * 119.99699 * 0.02562 * 14 12 11 36 36 H 1.08998 * 109.43127 * 311.88842 * 17 15 14 37 37 H 1.09002 * 109.43060 * 71.78969 * 17 15 14 38 38 H 1.09008 * 109.71647 * 69.14610 * 18 17 15 39 39 H 1.09004 * 109.71862 * 189.74390 * 18 17 15 40 40 H 1.07995 * 126.19361 * 359.83719 * 20 19 18 41 41 H 1.09004 * 109.75661 * 77.14494 * 25 24 23 42 42 H 1.09005 * 109.66843 * 316.50925 * 25 24 23 43 43 H 1.07994 * 120.00247 * 359.97438 * 27 26 9 44 44 H 1.08002 * 119.99710 * 180.20579 * 28 27 26 45 45 H 1.08000 * 119.99700 * 179.79111 * 29 28 27 46 46 H 1.08000 * 120.00266 * 179.97438 * 30 29 28 47 47 H 1.08006 * 120.00144 * 359.97438 * 31 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2124 7 6 2.0045 -1.1940 -0.0057 8 1 3.0797 -1.1973 0.0967 9 6 1.2579 -2.4945 -0.1551 10 1 0.3610 -2.3320 -0.7529 11 6 2.1549 -3.5208 -0.8499 12 6 2.4260 -3.0754 -2.2638 13 8 1.9483 -2.0394 -2.6753 14 7 3.1993 -3.8283 -3.0711 15 6 3.4633 -3.3951 -4.4454 16 1 3.5357 -2.3079 -4.4752 17 6 4.7807 -4.0064 -4.9276 18 6 5.2138 -3.3355 -6.2372 19 6 4.0430 -3.3593 -7.1885 20 6 4.0460 -3.1678 -8.5205 21 7 2.7705 -3.2835 -8.9534 22 1 2.4693 -3.1935 -9.8711 23 7 1.9585 -3.5555 -7.8419 24 6 2.7185 -3.5995 -6.7865 25 6 2.3167 -3.8549 -5.3543 26 6 0.8676 -3.0088 1.2066 27 6 1.8349 -3.2066 2.1741 28 6 1.4762 -3.6747 3.4245 29 6 0.1514 -3.9531 3.7044 30 6 -0.8152 -3.7598 2.7354 31 6 -0.4571 -3.2881 1.4863 32 1 -0.4849 -0.8365 -0.0763 33 1 3.0973 -3.6053 -0.3086 34 1 1.6557 -4.4897 -0.8636 35 1 3.5810 -4.6571 -2.7421 36 1 5.5497 -3.8539 -4.1704 37 1 4.6445 -5.0746 -5.0961 38 1 5.5084 -2.3043 -6.0422 39 1 6.0519 -3.8816 -6.6704 40 1 4.9107 -2.9590 -9.1328 41 1 2.1348 -4.9195 -5.2069 42 1 1.4135 -3.2912 -5.1206 43 1 2.8703 -2.9930 1.9541 44 1 2.2315 -3.8260 4.1814 45 1 -0.1283 -4.3220 4.6801 46 1 -1.8502 -3.9777 2.9540 47 1 -1.2124 -3.1372 0.7291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373511590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:37 Heat of formation + Delta-G solvation = 22.782558 kcal Electronic energy + Delta-G solvation = -28797.361637 eV Core-core repulsion = 24944.581791 eV Total energy + Delta-G solvation = -3852.779846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.43113 -40.81913 -39.86369 -37.84724 -36.03511 -34.43302 -33.26688 -33.07884 -31.59253 -31.03823 -29.94927 -29.43113 -27.02639 -25.32940 -24.41249 -23.19869 -22.63482 -21.96552 -21.74206 -21.07671 -19.94031 -18.79327 -18.49084 -17.86588 -17.24598 -17.08576 -16.46961 -16.13651 -15.74959 -15.65087 -15.58709 -15.18833 -15.02561 -14.63313 -14.55795 -14.41680 -14.03495 -14.01501 -13.85851 -13.75971 -13.41245 -13.15385 -12.97935 -12.67921 -12.58850 -12.46905 -12.21401 -12.07135 -11.94122 -11.80604 -11.67717 -11.45833 -11.33918 -10.70798 -10.57985 -10.42110 -10.29220 -9.97135 -9.62540 -9.35157 -9.25134 -8.42985 -6.08571 0.69324 0.75747 0.95844 1.47785 1.59556 1.73602 1.73958 1.89947 1.99392 2.39054 2.62589 3.12367 3.40845 3.51343 3.77169 3.91474 4.09828 4.13738 4.15554 4.29612 4.29961 4.32593 4.38090 4.46207 4.47243 4.53131 4.62884 4.66019 4.68388 4.84764 4.88075 4.89304 4.96551 4.99885 5.14886 5.21215 5.24920 5.26262 5.37899 5.43395 5.45318 5.61800 5.72585 5.76131 5.84414 5.96820 6.26420 6.32901 6.41612 6.49516 6.70469 6.78647 6.82055 7.59443 7.67679 8.97433 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002895 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.580473 B = 9668.190630 C =10602.747216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.026 4.026 3 Si 1.098 2.902 4 H -0.291 1.291 5 H -0.265 1.265 6 H -0.286 1.286 7 C -0.555 4.555 8 H 0.042 0.958 9 C 0.073 3.927 10 H 0.004 0.996 11 C -0.112 4.112 12 C 0.512 3.488 13 O -0.561 6.561 14 N -0.720 5.720 15 C 0.156 3.844 16 H 0.053 0.947 17 C -0.114 4.114 18 C -0.032 4.032 19 C -0.260 4.260 20 C 0.079 3.921 21 N -0.479 5.479 22 H 0.452 0.548 23 N -0.337 5.337 24 C 0.070 3.930 25 C -0.046 4.046 26 C -0.054 4.054 27 C -0.122 4.122 28 C -0.124 4.124 29 C -0.145 4.145 30 C -0.126 4.126 31 C -0.155 4.155 32 H 0.257 0.743 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.224 0.776 41 H 0.096 0.904 42 H 0.045 0.955 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.133 0.867 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.510 -14.160 -10.391 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.224 4.224 3 Si 0.923 3.077 4 H -0.217 1.217 5 H -0.190 1.190 6 H -0.212 1.212 7 C -0.593 4.593 8 H 0.060 0.940 9 C 0.054 3.946 10 H 0.022 0.978 11 C -0.152 4.152 12 C 0.299 3.701 13 O -0.437 6.437 14 N -0.374 5.374 15 C 0.051 3.949 16 H 0.071 0.929 17 C -0.152 4.152 18 C -0.070 4.070 19 C -0.271 4.271 20 C -0.067 4.067 21 N -0.189 5.189 22 H 0.298 0.702 23 N -0.161 5.161 24 C -0.098 4.098 25 C -0.086 4.086 26 C -0.055 4.055 27 C -0.140 4.140 28 C -0.141 4.141 29 C -0.163 4.163 30 C -0.144 4.144 31 C -0.173 4.173 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.252 0.748 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.240 0.760 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.134 0.866 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.151 0.849 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.797 -11.870 -11.055 20.056 hybrid contribution 0.016 -1.274 -0.479 1.361 sum 11.813 -13.143 -11.534 21.103 Atomic orbital electron populations 1.70850 1.07932 1.30383 1.49147 1.26728 0.96584 1.05636 0.93467 0.83190 0.74413 0.72891 0.77249 1.21712 1.18958 1.21205 1.21804 0.93561 0.92018 1.51895 0.93997 1.17692 0.94717 0.93296 0.88876 0.97818 1.21588 1.02256 0.99506 0.91806 1.21024 0.77566 0.83250 0.88221 1.90741 1.51012 1.25504 1.76487 1.45930 1.52684 1.26641 1.12159 1.20765 0.94839 0.98978 0.80365 0.92870 1.21801 0.94276 1.01038 0.98037 1.19988 0.94124 1.01311 0.91601 1.20498 0.95361 1.16197 0.95059 1.22766 0.89472 0.99107 0.95384 1.46389 1.05253 1.57712 1.09518 0.70197 1.76959 1.19518 1.25359 0.94237 1.22325 0.93353 0.99427 0.94713 1.20393 0.98651 1.02239 0.87321 1.20628 0.93356 0.93187 0.98331 1.21016 0.99308 1.00040 0.93634 1.21418 0.97121 0.99212 0.96397 1.21301 0.92917 1.02248 0.99811 1.21286 1.00281 0.99764 0.93041 1.21124 0.95911 1.02292 0.97978 0.93267 0.88194 0.88999 0.74767 0.89109 0.89473 0.91311 0.87517 0.75967 0.88533 0.93661 0.86552 0.83822 0.83580 0.84886 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.59 13.63 21.45 0.29 -61.30 16 2 C -0.03 -1.57 5.45 84.65 0.46 -1.11 16 3 Si 1.10 54.98 29.91 68.60 2.05 57.03 16 4 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.55 -31.26 6.41 25.60 0.16 -31.10 16 8 H 0.04 2.32 7.82 -2.91 -0.02 2.30 16 9 C 0.07 3.67 1.31 -12.29 -0.02 3.66 16 10 H 0.00 0.21 6.24 -2.39 -0.01 0.20 16 11 C -0.11 -4.32 4.94 29.85 0.15 -4.17 16 12 C 0.51 20.76 7.55 87.66 0.66 21.42 16 13 O -0.56 -29.94 14.68 -3.01 -0.04 -29.99 16 14 N -0.72 -20.42 5.08 -441.91 -2.24 -22.66 16 15 C 0.16 4.31 2.40 45.13 0.11 4.42 16 16 H 0.05 1.90 7.53 -2.39 -0.02 1.88 16 17 C -0.11 -1.96 5.33 30.73 0.16 -1.80 16 18 C -0.03 -0.50 6.28 30.03 0.19 -0.31 16 19 C -0.26 -5.42 5.89 -20.10 -0.12 -5.54 16 20 C 0.08 1.21 11.95 83.34 1.00 2.20 16 21 N -0.48 -9.10 7.37 -57.89 -0.43 -9.53 16 22 H 0.45 5.29 8.96 -213.18 -1.91 3.38 16 23 N -0.34 -9.91 12.68 -47.16 -0.60 -10.50 16 24 C 0.07 1.98 7.10 43.43 0.31 2.29 16 25 C -0.05 -1.36 5.88 30.04 0.18 -1.18 16 26 C -0.05 -2.46 4.77 -19.86 -0.09 -2.56 16 27 C -0.12 -4.81 8.88 22.27 0.20 -4.62 16 28 C -0.12 -4.04 10.05 22.27 0.22 -3.81 16 29 C -0.15 -4.52 10.05 22.27 0.22 -4.30 16 30 C -0.13 -4.46 10.05 22.27 0.22 -4.23 16 31 C -0.15 -6.70 9.67 22.27 0.22 -6.49 16 32 H 0.26 16.90 6.68 -92.71 -0.62 16.28 16 33 H 0.10 3.44 7.86 -2.39 -0.02 3.42 16 34 H 0.09 3.03 8.14 -2.39 -0.02 3.02 16 35 H 0.42 8.18 8.60 -92.71 -0.80 7.38 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.22 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.12 4.44 7.80 -2.91 -0.02 4.42 16 44 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 45 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 47 H 0.09 4.18 7.95 -2.91 -0.02 4.16 16 Total: -1.00 -87.34 387.22 1.71 -85.63 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -1.56 Total: 28.53 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 4.23 Total: -37.22 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -2.98 Total: -103.99 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.04 Total: -29.99 kcal Atomic # 14 Polarization: 54.98 SS G_CDS: 2.05 Total: 57.03 kcal Total: -87.34 1.71 -85.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373511590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.412 kcal (2) G-P(sol) polarization free energy of solvation -87.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds