Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48495 * 109.47305 * 270.00247 * 3 2 1 5 5 H 1.48498 * 109.46868 * 149.99998 * 3 2 1 6 6 H 1.48504 * 109.47021 * 30.00655 * 3 2 1 7 7 C 1.37883 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99306 * 173.64527 * 7 2 1 9 9 C 1.50692 * 120.00089 * 353.65008 * 7 2 1 10 10 H 1.09002 * 109.47508 * 327.67701 * 9 7 2 11 11 C 1.52998 * 109.47194 * 207.67869 * 9 7 2 12 12 C 1.50702 * 109.47192 * 65.98339 * 11 9 7 13 13 O 1.21281 * 120.00018 * 359.97438 * 12 11 9 14 14 N 1.34778 * 119.99915 * 180.02562 * 12 11 9 15 15 C 1.46500 * 119.99977 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.42298 * 34.99687 * 15 14 12 17 17 C 1.53020 * 109.42411 * 154.88186 * 15 14 12 18 18 C 1.53413 * 109.71508 * 191.84582 * 17 15 14 19 19 C 1.50881 * 108.15685 * 309.37342 * 18 17 15 20 20 C 1.34568 * 128.32721 * 196.72402 * 19 18 17 21 21 N 1.35196 * 107.61859 * 179.83576 * 20 19 18 22 22 H 0.97002 * 126.00747 * 180.02562 * 21 20 19 23 23 N 1.40311 * 107.99440 * 0.03742 * 21 20 19 24 24 C 1.30127 * 108.12300 * 0.02799 * 23 21 20 25 25 C 1.50952 * 128.28847 * 179.87189 * 24 23 21 26 26 C 1.50703 * 109.47189 * 87.67542 * 9 7 2 27 27 C 1.38235 * 119.99515 * 55.91127 * 26 9 7 28 28 C 1.38245 * 119.99671 * 179.80765 * 27 26 9 29 29 C 1.38233 * 119.99650 * 0.42050 * 28 27 26 30 30 C 1.38236 * 120.00406 * 359.80890 * 29 28 27 31 31 C 1.38230 * 119.99747 * 0.02562 * 30 29 28 32 32 H 0.96995 * 119.99912 * 182.90576 * 1 2 3 33 33 H 1.09000 * 109.47201 * 185.98510 * 11 9 7 34 34 H 1.09001 * 109.46665 * 305.98378 * 11 9 7 35 35 H 0.97001 * 119.99811 * 359.97438 * 14 12 11 36 36 H 1.09003 * 109.43162 * 311.87516 * 17 15 14 37 37 H 1.08999 * 109.42702 * 71.71601 * 17 15 14 38 38 H 1.08999 * 109.71246 * 189.72652 * 18 17 15 39 39 H 1.08994 * 109.79153 * 69.06844 * 18 17 15 40 40 H 1.08003 * 126.19531 * 359.85805 * 20 19 18 41 41 H 1.08998 * 109.71136 * 77.06723 * 25 24 23 42 42 H 1.08990 * 109.71371 * 316.41726 * 25 24 23 43 43 H 1.08000 * 120.00349 * 359.97438 * 27 26 9 44 44 H 1.08001 * 120.00126 * 180.20910 * 28 27 26 45 45 H 1.08006 * 119.99695 * 179.79045 * 29 28 27 46 46 H 1.07994 * 119.99905 * 179.97438 * 30 29 28 47 47 H 1.08001 * 120.00204 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 3.5467 1.4400 0.7000 6 1 1.4467 2.6526 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1969 -0.1041 9 6 1.2579 -2.4952 0.1432 10 1 0.3808 -2.3433 0.7722 11 6 2.1723 -3.5395 0.7869 12 6 2.4882 -3.1269 2.2015 13 8 2.0277 -2.0987 2.6505 14 7 3.2832 -3.9002 2.9673 15 6 3.5908 -3.4988 4.3423 16 1 2.7228 -3.0042 4.7783 17 6 3.9383 -4.7389 5.1687 18 6 3.9716 -4.3752 6.6588 19 6 4.8469 -3.1577 6.8261 20 6 5.4040 -2.6790 7.9536 21 7 6.1076 -1.5724 7.6245 22 1 6.6158 -1.0169 8.2361 23 7 5.9734 -1.3684 6.2428 24 6 5.2191 -2.3151 5.7652 25 6 4.7803 -2.5307 4.3371 26 6 0.8233 -2.9779 -1.2166 27 6 1.7596 -3.1598 -2.2172 28 6 1.3615 -3.6064 -3.4635 29 6 0.0260 -3.8627 -3.7116 30 6 -0.9109 -3.6762 -2.7124 31 6 -0.5124 -3.2330 -1.4653 32 1 -0.4850 -0.8389 0.0426 33 1 1.6703 -4.5070 0.7941 34 1 3.0972 -3.6143 0.2151 35 1 3.6518 -4.7224 2.6081 36 1 3.1854 -5.5092 5.0010 37 1 4.9149 -5.1153 4.8645 38 1 4.3842 -5.2062 7.2309 39 1 2.9630 -4.1537 7.0072 40 1 5.3070 -3.1023 8.9424 41 1 5.6005 -2.9591 3.7612 42 1 4.4787 -1.5800 3.8976 43 1 2.8025 -2.9557 -2.0245 44 1 2.0934 -3.7518 -4.2442 45 1 -0.2855 -4.2084 -4.6863 46 1 -1.9543 -3.8761 -2.9065 47 1 -1.2444 -3.0868 -0.6847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373511591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = 46.320820 kcal Electronic energy + Delta-G solvation = -28846.250343 eV Core-core repulsion = 24994.491193 eV Total energy + Delta-G solvation = -3851.759150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53252 -39.30471 -38.36514 -36.64905 -34.22842 -33.18143 -32.18091 -31.29450 -30.08491 -29.81266 -28.73514 -28.33501 -25.22276 -24.06255 -22.85155 -21.73882 -21.50952 -21.09190 -20.19005 -19.49368 -18.91460 -17.68698 -16.86697 -16.26685 -16.03868 -15.71127 -15.20268 -14.79871 -14.38493 -14.13193 -14.08783 -13.78521 -13.66977 -13.60993 -13.22027 -12.94312 -12.84951 -12.66677 -12.36435 -12.27945 -12.00507 -11.84621 -11.60169 -11.40308 -11.31295 -10.97028 -10.77493 -10.67063 -10.40245 -10.37412 -10.10149 -10.00072 -9.63323 -9.42970 -8.98773 -8.66922 -8.55465 -8.52360 -8.22781 -8.11075 -7.59803 -6.19390 -3.86538 1.80856 2.21937 2.27695 2.66668 2.74716 3.49209 3.53742 3.60899 3.63822 3.73804 4.43356 4.63607 4.64431 4.70598 4.78702 4.99672 5.11467 5.25177 5.39775 5.45456 5.52961 5.54784 5.62143 5.66075 5.67411 5.72806 5.79083 5.85690 5.98694 6.02258 6.04084 6.12001 6.17424 6.20643 6.30644 6.34546 6.45573 6.59512 6.72571 6.82192 6.93561 6.96204 7.18306 7.23726 7.25610 7.41499 7.61919 7.76091 7.88846 8.07516 8.27032 8.56008 9.01282 9.06496 9.82337 11.21320 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.003000 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.572697 B = 9332.180950 C =10694.211526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.032 3.968 3 Si 1.064 2.936 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.566 4.566 8 H 0.046 0.954 9 C 0.073 3.927 10 H 0.050 0.950 11 C -0.117 4.117 12 C 0.514 3.486 13 O -0.497 6.497 14 N -0.745 5.745 15 C 0.155 3.845 16 H 0.089 0.911 17 C -0.124 4.124 18 C -0.035 4.035 19 C -0.239 4.239 20 C 0.058 3.942 21 N -0.488 5.488 22 H 0.437 0.563 23 N -0.287 5.287 24 C 0.095 3.905 25 C -0.053 4.053 26 C -0.031 4.031 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.153 4.153 30 C -0.125 4.125 31 C -0.129 4.129 32 H 0.270 0.730 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.393 0.607 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.174 0.826 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.016 -13.219 11.221 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.174 4.174 3 Si 0.893 3.107 4 H -0.219 1.219 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.604 4.604 8 H 0.064 0.936 9 C 0.054 3.946 10 H 0.068 0.932 11 C -0.157 4.157 12 C 0.300 3.700 13 O -0.368 6.368 14 N -0.400 5.400 15 C 0.049 3.951 16 H 0.107 0.893 17 C -0.162 4.162 18 C -0.074 4.074 19 C -0.251 4.251 20 C -0.088 4.088 21 N -0.196 5.196 22 H 0.281 0.719 23 N -0.109 5.109 24 C -0.075 4.075 25 C -0.093 4.093 26 C -0.032 4.032 27 C -0.126 4.126 28 C -0.148 4.148 29 C -0.171 4.171 30 C -0.143 4.143 31 C -0.148 4.148 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.227 0.773 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.192 0.808 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.133 0.867 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.108 -9.729 11.246 17.438 hybrid contribution 0.335 -2.261 0.408 2.321 sum 9.443 -11.989 11.653 19.202 Atomic orbital electron populations 1.70730 1.06912 1.30932 1.45668 1.25553 0.96415 1.02192 0.93191 0.83624 0.75048 0.75763 0.76235 1.21868 1.21552 1.21139 1.21542 0.93771 0.90551 1.54507 0.93618 1.17860 0.95812 0.92989 0.87985 0.93235 1.21677 1.01904 0.99899 0.92252 1.20885 0.77621 0.83549 0.87918 1.90755 1.50085 1.22865 1.73068 1.46228 1.53311 1.26997 1.13421 1.20717 0.97287 0.94293 0.82839 0.89250 1.21831 1.02322 0.97318 0.94703 1.19919 0.98053 0.93565 0.95843 1.20148 1.09575 1.03131 0.92247 1.22020 0.96602 0.90335 0.99826 1.46352 1.42643 1.23370 1.07257 0.71909 1.77090 1.22328 1.22841 0.88634 1.22330 0.95619 0.92460 0.97050 1.20578 0.98117 1.02015 0.88636 1.20848 0.92383 0.90990 0.98956 1.20919 0.99804 0.99226 0.92632 1.21011 0.95620 1.01218 0.96979 1.20818 0.93627 1.04226 0.98468 1.20960 0.98420 1.00958 0.93943 1.21065 0.96229 1.00718 0.96749 0.91824 0.91656 0.90247 0.77333 0.90730 0.91313 0.90952 0.90951 0.80847 0.89773 0.88907 0.86722 0.87488 0.87633 0.87500 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.86 13.62 55.43 0.76 -27.11 16 2 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 3 Si 1.06 26.83 29.91 -169.99 -5.08 21.75 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.57 -15.40 6.41 -34.44 -0.22 -15.63 16 8 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 9 C 0.07 1.73 1.26 -92.93 -0.12 1.61 16 10 H 0.05 1.33 6.38 -51.93 -0.33 1.00 16 11 C -0.12 -2.22 4.94 -27.88 -0.14 -2.36 16 12 C 0.51 9.93 7.55 -10.98 -0.08 9.84 16 13 O -0.50 -12.21 14.68 5.56 0.08 -12.13 16 14 N -0.75 -10.47 5.08 -53.61 -0.27 -10.74 16 15 C 0.15 2.07 2.40 -67.73 -0.16 1.91 16 16 H 0.09 1.44 7.53 -51.93 -0.39 1.05 16 17 C -0.12 -1.17 5.33 -26.51 -0.14 -1.31 16 18 C -0.03 -0.31 6.28 -27.58 -0.17 -0.49 16 19 C -0.24 -2.70 5.89 -104.98 -0.62 -3.32 16 20 C 0.06 0.53 11.95 -17.37 -0.21 0.32 16 21 N -0.49 -5.07 7.37 30.35 0.22 -4.85 16 22 H 0.44 2.99 8.96 -182.44 -1.64 1.36 16 23 N -0.29 -4.24 12.68 33.75 0.43 -3.81 16 24 C 0.09 1.35 7.10 -82.34 -0.58 0.76 16 25 C -0.05 -0.77 5.88 -27.57 -0.16 -0.93 16 26 C -0.03 -0.69 4.67 -104.62 -0.49 -1.18 16 27 C -0.11 -2.20 8.88 -39.58 -0.35 -2.55 16 28 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 29 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 30 C -0.12 -2.30 10.05 -39.59 -0.40 -2.70 16 31 C -0.13 -2.71 9.37 -39.59 -0.37 -3.09 16 32 H 0.27 8.18 6.37 -40.82 -0.26 7.92 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.40 7.85 -51.93 -0.41 1.00 16 35 H 0.39 4.19 8.60 -40.82 -0.35 3.84 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 43 H 0.11 2.27 7.80 -52.49 -0.41 1.86 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.11 2.28 7.95 -52.49 -0.42 1.87 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -36.17 386.60 -11.21 -47.38 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.06 Total: 7.75 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -5.11 Total: -24.08 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 1.13 Total: -46.51 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -5.08 Total: 21.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.17 -11.21 -47.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373511591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.704 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds