Wall clock time and date at job start Tue Mar 31 2020 22:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48495 * 109.47305 * 270.00247 * 3 2 1 5 5 H 1.48498 * 109.46868 * 149.99998 * 3 2 1 6 6 H 1.48504 * 109.47021 * 30.00655 * 3 2 1 7 7 C 1.37883 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99306 * 173.64527 * 7 2 1 9 9 C 1.50692 * 120.00089 * 353.65008 * 7 2 1 10 10 H 1.09002 * 109.47508 * 327.67701 * 9 7 2 11 11 C 1.52998 * 109.47194 * 207.67869 * 9 7 2 12 12 C 1.50702 * 109.47192 * 65.98339 * 11 9 7 13 13 O 1.21281 * 120.00018 * 359.97438 * 12 11 9 14 14 N 1.34778 * 119.99915 * 180.02562 * 12 11 9 15 15 C 1.46500 * 119.99977 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.42298 * 34.99687 * 15 14 12 17 17 C 1.53020 * 109.42411 * 154.88186 * 15 14 12 18 18 C 1.53413 * 109.71508 * 191.84582 * 17 15 14 19 19 C 1.50881 * 108.15685 * 309.37342 * 18 17 15 20 20 C 1.34568 * 128.32721 * 196.72402 * 19 18 17 21 21 N 1.35196 * 107.61859 * 179.83576 * 20 19 18 22 22 H 0.97002 * 126.00747 * 180.02562 * 21 20 19 23 23 N 1.40311 * 107.99440 * 0.03742 * 21 20 19 24 24 C 1.30127 * 108.12300 * 0.02799 * 23 21 20 25 25 C 1.50952 * 128.28847 * 179.87189 * 24 23 21 26 26 C 1.50703 * 109.47189 * 87.67542 * 9 7 2 27 27 C 1.38235 * 119.99515 * 55.91127 * 26 9 7 28 28 C 1.38245 * 119.99671 * 179.80765 * 27 26 9 29 29 C 1.38233 * 119.99650 * 0.42050 * 28 27 26 30 30 C 1.38236 * 120.00406 * 359.80890 * 29 28 27 31 31 C 1.38230 * 119.99747 * 0.02562 * 30 29 28 32 32 H 0.96995 * 119.99912 * 182.90576 * 1 2 3 33 33 H 1.09000 * 109.47201 * 185.98510 * 11 9 7 34 34 H 1.09001 * 109.46665 * 305.98378 * 11 9 7 35 35 H 0.97001 * 119.99811 * 359.97438 * 14 12 11 36 36 H 1.09003 * 109.43162 * 311.87516 * 17 15 14 37 37 H 1.08999 * 109.42702 * 71.71601 * 17 15 14 38 38 H 1.08999 * 109.71246 * 189.72652 * 18 17 15 39 39 H 1.08994 * 109.79153 * 69.06844 * 18 17 15 40 40 H 1.08003 * 126.19531 * 359.85805 * 20 19 18 41 41 H 1.08998 * 109.71136 * 77.06723 * 25 24 23 42 42 H 1.08990 * 109.71371 * 316.41726 * 25 24 23 43 43 H 1.08000 * 120.00349 * 359.97438 * 27 26 9 44 44 H 1.08001 * 120.00126 * 180.20910 * 28 27 26 45 45 H 1.08006 * 119.99695 * 179.79045 * 29 28 27 46 46 H 1.07994 * 119.99905 * 179.97438 * 30 29 28 47 47 H 1.08001 * 120.00204 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 3.5467 1.4400 0.7000 6 1 1.4467 2.6526 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1969 -0.1041 9 6 1.2579 -2.4952 0.1432 10 1 0.3808 -2.3433 0.7722 11 6 2.1723 -3.5395 0.7869 12 6 2.4882 -3.1269 2.2015 13 8 2.0277 -2.0987 2.6505 14 7 3.2832 -3.9002 2.9673 15 6 3.5908 -3.4988 4.3423 16 1 2.7228 -3.0042 4.7783 17 6 3.9383 -4.7389 5.1687 18 6 3.9716 -4.3752 6.6588 19 6 4.8469 -3.1577 6.8261 20 6 5.4040 -2.6790 7.9536 21 7 6.1076 -1.5724 7.6245 22 1 6.6158 -1.0169 8.2361 23 7 5.9734 -1.3684 6.2428 24 6 5.2191 -2.3151 5.7652 25 6 4.7803 -2.5307 4.3371 26 6 0.8233 -2.9779 -1.2166 27 6 1.7596 -3.1598 -2.2172 28 6 1.3615 -3.6064 -3.4635 29 6 0.0260 -3.8627 -3.7116 30 6 -0.9109 -3.6762 -2.7124 31 6 -0.5124 -3.2330 -1.4653 32 1 -0.4850 -0.8389 0.0426 33 1 1.6703 -4.5070 0.7941 34 1 3.0972 -3.6143 0.2151 35 1 3.6518 -4.7224 2.6081 36 1 3.1854 -5.5092 5.0010 37 1 4.9149 -5.1153 4.8645 38 1 4.3842 -5.2062 7.2309 39 1 2.9630 -4.1537 7.0072 40 1 5.3070 -3.1023 8.9424 41 1 5.6005 -2.9591 3.7612 42 1 4.4787 -1.5800 3.8976 43 1 2.8025 -2.9557 -2.0245 44 1 2.0934 -3.7518 -4.2442 45 1 -0.2855 -4.2084 -4.6863 46 1 -1.9543 -3.8761 -2.9065 47 1 -1.2444 -3.0868 -0.6847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373511591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:40 Heat of formation + Delta-G solvation = 22.323657 kcal Electronic energy + Delta-G solvation = -28847.290938 eV Core-core repulsion = 24994.491193 eV Total energy + Delta-G solvation = -3852.799745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42568 -40.82032 -39.86420 -37.84319 -36.04342 -34.43132 -33.27048 -33.07169 -31.58951 -31.03490 -29.95234 -29.42782 -27.02846 -25.34061 -24.40511 -23.19453 -22.62959 -21.95784 -21.74056 -21.07459 -19.94243 -18.79464 -18.49990 -17.85937 -17.26496 -17.13213 -16.36553 -16.15069 -15.74011 -15.68945 -15.60510 -15.25275 -14.98681 -14.61981 -14.52207 -14.41627 -14.04462 -13.99647 -13.92204 -13.71671 -13.40400 -13.16272 -12.98291 -12.66419 -12.59049 -12.50903 -12.20306 -12.08367 -11.96948 -11.80382 -11.67422 -11.47147 -11.33151 -10.70892 -10.60120 -10.41546 -10.30200 -9.97580 -9.62067 -9.34605 -9.25033 -8.44528 -6.09495 0.69877 0.75990 0.96756 1.44594 1.56712 1.69798 1.74310 1.88762 2.01010 2.39225 2.59222 3.12584 3.38621 3.52049 3.77759 3.91810 4.10158 4.13824 4.16033 4.29697 4.30150 4.32882 4.38454 4.46530 4.48065 4.52604 4.63361 4.66225 4.70056 4.85190 4.87474 4.89735 4.97640 5.01175 5.14650 5.21547 5.25538 5.26401 5.38116 5.43345 5.45613 5.62293 5.72917 5.76545 5.84591 5.96843 6.26070 6.32813 6.41875 6.50518 6.71438 6.78481 6.82032 7.59017 7.65112 8.96453 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.003000 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.572697 B = 9332.180950 C =10694.211526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.024 4.024 3 Si 1.097 2.903 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.292 1.292 7 C -0.554 4.554 8 H 0.037 0.963 9 C 0.075 3.925 10 H 0.005 0.995 11 C -0.111 4.111 12 C 0.512 3.488 13 O -0.561 6.561 14 N -0.720 5.720 15 C 0.158 3.842 16 H 0.056 0.944 17 C -0.113 4.113 18 C -0.031 4.031 19 C -0.260 4.260 20 C 0.079 3.921 21 N -0.479 5.479 22 H 0.451 0.549 23 N -0.339 5.339 24 C 0.070 3.930 25 C -0.048 4.048 26 C -0.055 4.055 27 C -0.123 4.123 28 C -0.125 4.125 29 C -0.145 4.145 30 C -0.125 4.125 31 C -0.152 4.152 32 H 0.260 0.740 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.415 0.585 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.225 0.775 41 H 0.093 0.907 42 H 0.042 0.958 43 H 0.114 0.886 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.134 0.866 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.495 -16.410 11.111 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.222 4.222 3 Si 0.922 3.078 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.218 1.218 7 C -0.592 4.592 8 H 0.056 0.944 9 C 0.055 3.945 10 H 0.024 0.976 11 C -0.151 4.151 12 C 0.299 3.701 13 O -0.437 6.437 14 N -0.374 5.374 15 C 0.052 3.948 16 H 0.074 0.926 17 C -0.151 4.151 18 C -0.069 4.069 19 C -0.271 4.271 20 C -0.067 4.067 21 N -0.189 5.189 22 H 0.298 0.702 23 N -0.162 5.162 24 C -0.098 4.098 25 C -0.088 4.088 26 C -0.055 4.055 27 C -0.141 4.141 28 C -0.143 4.143 29 C -0.163 4.163 30 C -0.143 4.143 31 C -0.171 4.171 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.252 0.748 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.241 0.759 41 H 0.112 0.888 42 H 0.061 0.939 43 H 0.132 0.868 44 H 0.160 0.840 45 H 0.164 0.836 46 H 0.152 0.848 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.644 -12.981 11.127 20.140 hybrid contribution -0.079 -1.356 0.485 1.442 sum 10.565 -14.337 11.613 21.261 Atomic orbital electron populations 1.70807 1.07772 1.30334 1.49274 1.26615 0.96641 1.05375 0.93612 0.83189 0.74197 0.73155 0.77237 1.19637 1.21033 1.21826 1.21803 0.93380 0.92136 1.51892 0.94449 1.17680 0.94564 0.93186 0.89039 0.97642 1.21581 1.01922 0.99752 0.91884 1.21026 0.77629 0.83041 0.88382 1.90738 1.52898 1.25797 1.74313 1.45940 1.51334 1.26713 1.13438 1.20766 0.95454 0.96149 0.82437 0.92607 1.21805 1.03681 0.95128 0.94494 1.19994 0.97783 0.93677 0.95472 1.20511 1.10664 1.04033 0.91887 1.22779 0.94015 0.88720 1.01203 1.46395 1.42514 1.23954 1.06018 0.70220 1.76975 1.23919 1.24148 0.91201 1.22332 0.96556 0.93696 0.97226 1.20410 0.98759 0.99899 0.89760 1.20621 0.93434 0.93309 0.98158 1.21008 0.99435 1.00174 0.93477 1.21405 0.96906 0.99397 0.96550 1.21303 0.93015 1.02270 0.99663 1.21291 1.00342 0.99783 0.92898 1.21121 0.95650 1.02258 0.98025 0.92945 0.88623 0.88532 0.74770 0.88859 0.89649 0.87504 0.91086 0.75882 0.88833 0.93875 0.86796 0.83969 0.83595 0.84768 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.29 13.62 21.45 0.29 -61.00 16 2 C -0.02 -1.45 5.45 84.66 0.46 -0.99 16 3 Si 1.10 56.34 29.91 68.60 2.05 58.40 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 7 C -0.55 -31.59 6.41 25.60 0.16 -31.42 16 8 H 0.04 2.13 7.82 -2.91 -0.02 2.11 16 9 C 0.07 3.72 1.26 -12.29 -0.02 3.71 16 10 H 0.01 0.31 6.38 -2.39 -0.02 0.30 16 11 C -0.11 -4.31 4.94 29.85 0.15 -4.16 16 12 C 0.51 20.71 7.55 87.66 0.66 21.37 16 13 O -0.56 -29.82 14.68 -3.03 -0.04 -29.87 16 14 N -0.72 -20.37 5.08 -441.90 -2.24 -22.62 16 15 C 0.16 4.33 2.40 45.12 0.11 4.44 16 16 H 0.06 1.93 7.53 -2.38 -0.02 1.91 16 17 C -0.11 -1.89 5.33 30.74 0.16 -1.73 16 18 C -0.03 -0.46 6.28 30.04 0.19 -0.27 16 19 C -0.26 -5.41 5.89 -20.10 -0.12 -5.53 16 20 C 0.08 1.21 11.95 83.33 1.00 2.21 16 21 N -0.48 -9.33 7.37 -57.89 -0.43 -9.75 16 22 H 0.45 5.50 8.96 -213.18 -1.91 3.59 16 23 N -0.34 -10.28 12.68 -47.13 -0.60 -10.88 16 24 C 0.07 2.03 7.10 43.44 0.31 2.34 16 25 C -0.05 -1.48 5.88 30.05 0.18 -1.31 16 26 C -0.05 -2.46 4.67 -19.87 -0.09 -2.56 16 27 C -0.12 -4.90 8.88 22.27 0.20 -4.70 16 28 C -0.12 -4.11 10.05 22.27 0.22 -3.88 16 29 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 30 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 31 C -0.15 -6.52 9.37 22.27 0.21 -6.31 16 32 H 0.26 16.89 6.37 -92.71 -0.59 16.30 16 33 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.10 3.39 7.85 -2.39 -0.02 3.37 16 35 H 0.42 8.17 8.60 -92.71 -0.80 7.37 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 38 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.22 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.11 4.44 7.80 -2.91 -0.02 4.42 16 44 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 45 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 47 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -87.60 386.60 1.73 -85.86 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -1.53 Total: 27.12 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 4.23 Total: -37.26 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -2.98 Total: -104.24 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.04 Total: -29.87 kcal Atomic # 14 Polarization: 56.34 SS G_CDS: 2.05 Total: 58.40 kcal Total: -87.60 1.73 -85.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373511591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.188 kcal (2) G-P(sol) polarization free energy of solvation -87.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds