Wall clock time and date at job start Tue Mar 31 2020 22:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99965 * 2 1 4 4 H 1.48502 * 109.47331 * 270.00191 * 3 2 1 5 5 H 1.48509 * 109.47008 * 29.99993 * 3 2 1 6 6 H 1.48492 * 109.47256 * 149.99894 * 3 2 1 7 7 C 1.37867 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00116 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00427 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47680 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47369 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47256 * 305.00440 * 11 10 9 13 13 N 1.46902 * 109.46871 * 65.00019 * 11 10 9 14 14 C 1.50695 * 109.46952 * 184.99698 * 11 10 9 15 15 O 1.21281 * 120.00267 * 259.99976 * 14 11 10 16 16 N 1.34783 * 119.99875 * 80.00747 * 14 11 10 17 17 C 1.46498 * 120.00009 * 179.97438 * 16 14 11 18 18 H 1.08997 * 109.47484 * 34.99635 * 17 16 14 19 19 C 1.50701 * 109.46823 * 154.99890 * 17 16 14 20 20 C 1.38228 * 120.00279 * 39.72608 * 19 17 16 21 21 C 1.38235 * 120.00077 * 179.78903 * 20 19 17 22 22 C 1.38234 * 119.99887 * 0.43997 * 21 20 19 23 23 C 1.38232 * 119.99846 * 359.80978 * 22 21 20 24 24 C 1.38228 * 120.00212 * 359.97438 * 23 22 21 25 25 C 1.50703 * 109.47037 * 274.99489 * 17 16 14 26 26 C 1.38651 * 120.78951 * 320.02521 * 25 17 16 27 27 C 1.38203 * 119.16168 * 179.97438 * 26 25 17 28 28 N 1.31874 * 120.76322 * 0.02562 * 27 26 25 29 29 C 1.31870 * 121.72652 * 0.02562 * 28 27 26 30 30 C 1.38201 * 120.76299 * 359.97438 * 29 28 27 31 31 H 0.96998 * 120.00327 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46958 * 59.99550 * 9 7 2 33 33 H 1.08999 * 109.47145 * 300.00399 * 9 7 2 34 34 H 1.09005 * 109.46778 * 59.99754 * 10 9 7 35 35 H 1.08999 * 109.47161 * 300.00394 * 10 9 7 36 36 H 1.00907 * 110.99945 * 60.00224 * 13 11 10 37 37 H 1.00895 * 111.00198 * 183.94863 * 13 11 10 38 38 H 0.97006 * 119.99693 * 359.97438 * 16 14 11 39 39 H 1.07996 * 120.00159 * 359.97438 * 20 19 17 40 40 H 1.08007 * 120.00280 * 180.27494 * 21 20 19 41 41 H 1.08005 * 119.99747 * 179.83892 * 22 21 20 42 42 H 1.08005 * 120.00000 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.00009 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.42195 * 359.97438 * 26 25 17 45 45 H 1.07996 * 119.61854 * 180.30069 * 27 26 25 46 46 H 1.08001 * 119.61693 * 179.97438 * 29 28 27 47 47 H 1.07997 * 120.41815 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0022 12 1 5.9149 -2.0477 -0.8400 13 7 6.0412 -2.0501 1.2570 14 6 6.0538 -4.0519 -0.1204 15 8 6.4280 -4.6503 0.8660 16 7 6.0875 -4.6530 -1.3263 17 6 6.5763 -6.0288 -1.4456 18 1 6.2883 -6.5949 -0.5598 19 6 5.9754 -6.6710 -2.6694 20 6 5.8349 -5.9409 -3.8347 21 6 5.2878 -6.5312 -4.9585 22 6 4.8727 -7.8491 -4.9143 23 6 5.0085 -8.5776 -3.7475 24 6 5.5597 -7.9886 -2.6250 25 6 8.0782 -6.0194 -1.5695 26 6 8.7210 -5.0600 -2.3368 27 6 10.0999 -5.0825 -2.4265 28 7 10.8022 -6.0019 -1.7936 29 6 10.2246 -6.9299 -1.0560 30 6 8.8499 -6.9704 -0.9196 31 1 -0.4850 0.8400 -0.0004 32 1 3.8745 -0.6799 0.8911 33 1 3.8752 -0.6803 -0.8888 34 1 3.6585 -3.1509 -0.8875 35 1 3.6579 -3.1498 0.8924 36 1 5.7177 -2.5784 2.0535 37 1 7.0477 -1.9796 1.2546 38 1 5.7880 -4.1745 -2.1152 39 1 6.1554 -4.9101 -3.8681 40 1 5.1821 -5.9621 -5.8704 41 1 4.4428 -8.3095 -5.7917 42 1 4.6838 -9.6072 -3.7128 43 1 5.6654 -8.5578 -1.7132 44 1 8.1514 -4.3047 -2.8579 45 1 10.6085 -4.3358 -3.0182 46 1 10.8328 -7.6669 -0.5526 47 1 8.3827 -7.7327 -0.3138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:25 Heat of formation + Delta-G solvation = 18.096214 kcal Electronic energy + Delta-G solvation = -28731.363798 eV Core-core repulsion = 24878.380737 eV Total energy + Delta-G solvation = -3852.983061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.04278 -39.74851 -39.27427 -36.10279 -35.25816 -32.81620 -32.62252 -31.51290 -31.32748 -31.12198 -30.51884 -27.51841 -26.18981 -24.01453 -23.49920 -22.96856 -22.80020 -21.14221 -20.44017 -19.95416 -17.87491 -17.35819 -17.05691 -16.70639 -16.53029 -16.08680 -15.75771 -15.58152 -15.28889 -14.88934 -14.56276 -14.36446 -14.14629 -13.96721 -13.88779 -13.69727 -13.53198 -13.45356 -13.02069 -12.67881 -12.58039 -12.41436 -11.88072 -11.69261 -11.58726 -11.36834 -11.06756 -10.90023 -10.49420 -9.98654 -9.94766 -9.83387 -9.80772 -9.60862 -9.42883 -9.34386 -9.23610 -9.13044 -9.08738 -8.53412 -8.43807 -6.00951 -3.98785 0.80646 0.88828 1.07443 1.10981 2.59289 2.99898 3.34363 3.42624 3.44661 3.50404 3.56195 4.20525 4.25291 4.40224 4.45959 4.49961 4.61113 4.65953 4.70176 4.78573 4.83721 4.88808 4.93586 5.08421 5.16137 5.29376 5.31795 5.34750 5.35858 5.51105 5.59109 5.62276 5.67846 5.69996 5.95563 6.06531 6.11519 6.19317 6.25153 6.33787 6.42481 6.43762 6.63561 6.83792 7.16876 7.32560 7.39318 7.56435 7.61642 7.71306 7.84643 8.12277 8.56235 9.03666 9.61967 11.12537 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003077 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.887190 B = 9098.397322 C =10658.286277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.087 4.087 11 C 0.077 3.923 12 H 0.098 0.902 13 N -0.810 5.810 14 C 0.488 3.512 15 O -0.545 6.545 16 N -0.723 5.723 17 C 0.224 3.776 18 H 0.107 0.893 19 C -0.090 4.090 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.103 4.103 25 C -0.040 4.040 26 C -0.157 4.157 27 C 0.097 3.903 28 N -0.487 5.487 29 C 0.098 3.902 30 C -0.157 4.157 31 H 0.262 0.738 32 H 0.034 0.966 33 H 0.008 0.992 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.350 0.650 37 H 0.335 0.665 38 H 0.404 0.596 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.155 0.845 46 H 0.156 0.844 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.894 -16.834 -9.545 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.126 4.126 11 C -0.039 4.039 12 H 0.116 0.884 13 N -0.338 5.338 14 C 0.274 3.726 15 O -0.421 6.421 16 N -0.376 5.376 17 C 0.119 3.881 18 H 0.125 0.875 19 C -0.090 4.090 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.134 4.134 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.049 4.049 26 C -0.177 4.177 27 C -0.059 4.059 28 N -0.196 5.196 29 C -0.059 4.059 30 C -0.177 4.177 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.164 0.836 37 H 0.147 0.853 38 H 0.240 0.760 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.172 0.828 46 H 0.173 0.827 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.483 -16.453 -9.069 26.355 hybrid contribution -0.317 0.125 -0.269 0.434 sum 18.167 -16.327 -9.338 26.150 Atomic orbital electron populations 1.69920 1.06372 1.26842 1.51415 1.25011 0.94693 0.99216 0.94568 0.86778 0.80727 0.83469 0.78394 1.20512 1.21595 1.18406 1.21171 0.89727 0.94337 1.50721 0.91320 1.19484 0.96373 0.91105 0.97171 1.21477 0.87841 1.01639 1.01603 1.21870 0.99443 0.87449 0.95166 0.88418 1.59033 1.15383 1.55967 1.03372 1.22740 0.76456 0.91045 0.82388 1.90662 1.48080 1.66440 1.36939 1.46290 1.66531 1.13958 1.10845 1.18563 0.88030 0.84476 0.97037 0.87506 1.19680 1.00148 0.94851 0.94342 1.20918 0.99449 0.99700 0.92558 1.21158 0.98343 0.95291 0.98352 1.21229 0.99409 0.94592 0.98166 1.21148 0.99190 1.00102 0.92967 1.20985 0.98189 0.94127 0.98898 1.20511 0.95609 0.94328 0.94469 1.21914 0.96045 0.99674 1.00026 1.22733 0.90986 0.95965 0.96237 1.67664 1.41134 1.03359 1.07427 1.22727 0.92252 0.95903 0.94972 1.21984 0.95247 0.99901 1.00584 0.92826 0.94774 0.97366 0.92181 0.92154 0.83552 0.85305 0.75988 0.86073 0.85612 0.85854 0.85726 0.85768 0.85136 0.82769 0.82717 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 10 C -0.09 -1.64 4.78 -26.73 -0.13 -1.76 16 11 C 0.08 1.15 3.15 -68.87 -0.22 0.93 16 12 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 13 N -0.81 -12.38 8.44 -5.66 -0.05 -12.43 16 14 C 0.49 6.92 7.02 -10.98 -0.08 6.85 16 15 O -0.54 -9.20 15.91 5.56 0.09 -9.11 16 16 N -0.72 -8.10 4.35 -56.07 -0.24 -8.34 16 17 C 0.22 2.35 2.41 -70.23 -0.17 2.18 16 18 H 0.11 1.26 7.34 -51.93 -0.38 0.87 16 19 C -0.09 -0.85 4.94 -104.63 -0.52 -1.37 16 20 C -0.11 -0.95 8.92 -39.59 -0.35 -1.30 16 21 C -0.11 -0.94 10.05 -39.58 -0.40 -1.33 16 22 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 23 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 24 C -0.10 -0.92 9.67 -39.59 -0.38 -1.31 16 25 C -0.04 -0.41 4.92 -104.32 -0.51 -0.93 16 26 C -0.16 -1.52 9.29 -39.44 -0.37 -1.89 16 27 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 28 N -0.49 -5.51 10.36 -13.25 -0.14 -5.64 16 29 C 0.10 0.97 11.18 -17.55 -0.20 0.78 16 30 C -0.16 -1.55 9.78 -39.44 -0.39 -1.93 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 33 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.35 5.51 8.58 -39.29 -0.34 5.17 16 37 H 0.34 4.46 9.06 -39.29 -0.36 4.10 16 38 H 0.40 3.84 6.85 -40.82 -0.28 3.56 16 39 H 0.12 0.88 6.59 -52.49 -0.35 0.54 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.12 0.93 8.04 -52.48 -0.42 0.50 16 44 H 0.13 1.04 7.49 -52.49 -0.39 0.65 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 395.10 15.07 5.95 5.95 Total: -1.00 -34.91 395.10 -10.17 -45.08 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.65 Total: 11.06 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -5.23 Total: -16.40 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.34 Total: -53.67 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.91 -10.17 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.177 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds