Wall clock time and date at job start Tue Mar 31 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48499 * 109.47195 * 240.00500 * 3 2 1 5 5 H 1.48503 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47344 * 120.00271 * 3 2 1 7 7 C 1.37878 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47340 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47468 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46836 * 304.99762 * 11 10 9 13 13 N 1.46907 * 109.47250 * 64.99568 * 11 10 9 14 14 C 1.50696 * 109.47074 * 184.99998 * 11 10 9 15 15 O 1.21287 * 119.99488 * 259.99601 * 14 11 10 16 16 N 1.34771 * 120.00236 * 80.00044 * 14 11 10 17 17 C 1.46505 * 120.00155 * 180.02562 * 16 14 11 18 18 H 1.08998 * 109.46918 * 34.98935 * 17 16 14 19 19 C 1.50692 * 109.47117 * 154.99948 * 17 16 14 20 20 C 1.38233 * 120.00489 * 39.72685 * 19 17 16 21 21 C 1.38231 * 120.00293 * 179.79091 * 20 19 17 22 22 C 1.38240 * 119.99777 * 0.45648 * 21 20 19 23 23 C 1.38236 * 120.00031 * 359.77578 * 22 21 20 24 24 C 1.38234 * 120.00037 * 0.02562 * 23 22 21 25 25 C 1.50706 * 109.46710 * 274.99671 * 17 16 14 26 26 C 1.38675 * 120.41497 * 139.99933 * 25 17 16 27 27 C 1.38631 * 118.41792 * 180.02562 * 26 25 17 28 28 C 1.38221 * 119.16077 * 0.25627 * 27 26 25 29 29 N 1.31860 * 120.76509 * 359.49797 * 28 27 26 30 30 C 1.31882 * 121.72556 * 0.49011 * 29 28 27 31 31 H 0.96999 * 120.00079 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47397 * 59.99758 * 9 7 2 33 33 H 1.09004 * 109.46915 * 299.99780 * 9 7 2 34 34 H 1.09001 * 109.47143 * 59.99516 * 10 9 7 35 35 H 1.09000 * 109.46494 * 300.00009 * 10 9 7 36 36 H 1.00898 * 110.99489 * 296.05108 * 13 11 10 37 37 H 1.00898 * 110.99534 * 60.00317 * 13 11 10 38 38 H 0.97000 * 119.99705 * 359.97438 * 16 14 11 39 39 H 1.07999 * 119.99804 * 359.97438 * 20 19 17 40 40 H 1.07997 * 120.00750 * 180.24943 * 21 20 19 41 41 H 1.08007 * 119.99800 * 179.78891 * 22 21 20 42 42 H 1.08000 * 119.99656 * 180.02562 * 23 22 21 43 43 H 1.07998 * 119.99904 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.79161 * 359.97438 * 26 25 17 45 45 H 1.08002 * 120.41548 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.62066 * 179.74470 * 28 27 26 47 47 H 1.07993 * 119.62126 * 179.75488 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7880 -5.0073 0.8405 13 7 0.7290 -5.1182 -1.2567 14 6 2.4550 -6.1298 0.1226 15 8 2.7871 -6.7531 -0.8634 16 7 2.9575 -6.4592 1.3290 17 6 3.9054 -7.5698 1.4493 18 1 4.5406 -7.6028 0.5641 19 6 4.7603 -7.3701 2.6741 20 6 4.1965 -6.8841 3.8389 21 6 4.9798 -6.7050 4.9636 22 6 6.3290 -7.0030 4.9208 23 6 6.8939 -7.4845 3.7546 24 6 6.1097 -7.6675 2.6311 25 6 3.1471 -8.8664 1.5719 26 6 3.5927 -10.0049 0.9176 27 6 2.8630 -11.1752 1.0587 28 6 1.7207 -11.1669 1.8369 29 7 1.3292 -10.0663 2.4485 30 6 1.9986 -8.9355 2.3373 31 1 -0.4850 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 2.8721 -3.6043 0.8894 35 1 2.8719 -3.6043 -0.8905 36 1 0.0243 -4.4001 -1.3329 37 1 1.3491 -5.1022 -2.0525 38 1 2.6921 -5.9605 2.1175 39 1 3.1433 -6.6471 3.8710 40 1 4.5386 -6.3291 5.8749 41 1 6.9418 -6.8598 5.7987 42 1 7.9479 -7.7177 3.7214 43 1 6.5511 -8.0432 1.7198 44 1 4.4865 -9.9804 0.3119 45 1 3.1806 -12.0807 0.5630 46 1 1.1443 -12.0734 1.9485 47 1 1.6450 -8.0532 2.8499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424163087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:16 Heat of formation + Delta-G solvation = 14.477873 kcal Electronic energy + Delta-G solvation = -28685.293271 eV Core-core repulsion = 24832.153307 eV Total energy + Delta-G solvation = -3853.139964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92984 -39.56544 -39.11854 -35.95544 -35.22515 -32.88843 -32.69880 -31.74014 -31.16566 -30.78487 -29.89851 -27.24739 -25.85226 -24.06159 -23.63135 -22.90548 -22.75947 -21.17954 -20.52525 -19.83755 -17.79980 -17.39416 -17.03754 -16.60501 -16.18967 -16.07901 -15.60808 -15.27993 -14.81265 -14.61840 -14.46999 -14.41898 -14.15162 -13.85211 -13.68624 -13.54434 -13.22409 -13.14503 -13.05579 -12.94580 -12.52394 -12.16693 -12.04048 -11.71520 -11.44978 -11.29638 -11.09605 -10.92545 -10.72253 -10.03039 -10.00492 -9.91488 -9.72510 -9.46581 -9.28688 -9.20805 -9.18447 -9.04396 -8.94220 -8.44735 -8.20306 -6.09300 -4.12574 0.83783 1.07587 1.13110 1.18500 2.85936 3.10712 3.27749 3.32721 3.35055 3.52270 3.65630 4.25538 4.38506 4.41501 4.55901 4.61819 4.68917 4.72406 4.84172 4.85977 4.89153 5.00835 5.15245 5.19318 5.23218 5.26828 5.31898 5.43604 5.55571 5.59142 5.67406 5.73209 5.74835 5.92351 6.03120 6.16005 6.19202 6.25080 6.26645 6.44073 6.50009 6.52827 6.70140 6.85658 7.37678 7.50027 7.58311 7.64228 7.82032 7.87320 7.89365 8.29869 8.38347 8.93152 9.52338 11.01544 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010855 B = 0.002991 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.843274 B = 9360.118764 C =11050.148296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.097 0.903 13 N -0.830 5.830 14 C 0.530 3.470 15 O -0.532 6.532 16 N -0.729 5.729 17 C 0.234 3.766 18 H 0.105 0.895 19 C -0.087 4.087 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.105 4.105 25 C -0.136 4.136 26 C -0.059 4.059 27 C -0.173 4.173 28 C 0.094 3.906 29 N -0.483 5.483 30 C 0.118 3.882 31 H 0.262 0.738 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.355 0.645 37 H 0.345 0.655 38 H 0.402 0.598 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.154 0.846 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.437 -20.736 8.514 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.177 4.177 11 C -0.039 4.039 12 H 0.115 0.885 13 N -0.362 5.362 14 C 0.317 3.683 15 O -0.407 6.407 16 N -0.383 5.383 17 C 0.128 3.872 18 H 0.123 0.877 19 C -0.088 4.088 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.140 4.140 26 C -0.086 4.086 27 C -0.192 4.192 28 C -0.063 4.063 29 N -0.191 5.191 30 C -0.039 4.039 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.238 0.762 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.171 0.829 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.502 -21.790 8.559 25.265 hybrid contribution 1.509 2.204 -0.330 2.691 sum 11.011 -19.585 8.229 23.928 Atomic orbital electron populations 1.69934 1.06012 1.26913 1.50306 1.25005 0.94863 0.99278 0.95109 0.86648 0.79604 0.83047 0.78667 1.20228 1.21207 1.20212 1.21137 0.92978 0.90902 1.51290 0.92779 1.19095 0.93687 0.91066 0.97367 1.22386 0.99879 0.93901 1.01533 1.21468 0.94603 0.92144 0.95721 0.88544 1.58738 1.18435 1.55944 1.03113 1.20957 0.80871 0.84232 0.82235 1.90634 1.59706 1.53318 1.37016 1.46149 1.47129 1.34354 1.10653 1.18411 0.88882 0.83219 0.96673 0.87688 1.19748 0.94137 1.00410 0.94496 1.20952 1.00010 0.99191 0.92555 1.21156 0.94059 0.99552 0.98345 1.21212 0.95265 0.99000 0.98132 1.21133 0.99845 0.99513 0.93014 1.20973 0.92726 0.99788 0.98836 1.21084 0.97832 0.95966 0.99073 1.21409 0.99122 0.91907 0.96120 1.22101 0.97096 0.99069 1.00969 1.22772 0.94123 0.96488 0.92895 1.67704 1.31437 0.99269 1.20714 1.22470 0.90897 0.95666 0.94898 0.92805 0.96401 0.96318 0.92487 0.92669 0.82966 0.84154 0.76156 0.85966 0.85655 0.85966 0.85846 0.85817 0.84848 0.84752 0.82859 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 10 C -0.14 -2.65 4.78 -26.73 -0.13 -2.77 16 11 C 0.08 1.27 3.21 -68.86 -0.22 1.05 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -14.29 8.94 -5.65 -0.05 -14.34 16 14 C 0.53 8.49 7.04 -10.99 -0.08 8.42 16 15 O -0.53 -10.02 15.91 5.55 0.09 -9.93 16 16 N -0.73 -9.12 4.29 -56.07 -0.24 -9.36 16 17 C 0.23 2.66 2.40 -70.23 -0.17 2.49 16 18 H 0.11 1.29 7.33 -51.93 -0.38 0.91 16 19 C -0.09 -0.88 4.94 -104.63 -0.52 -1.40 16 20 C -0.11 -1.03 8.89 -39.59 -0.35 -1.39 16 21 C -0.11 -0.99 10.05 -39.58 -0.40 -1.39 16 22 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.10 -0.96 9.67 -39.58 -0.38 -1.35 16 25 C -0.14 -1.58 4.91 -104.48 -0.51 -2.10 16 26 C -0.06 -0.62 9.82 -39.28 -0.39 -1.00 16 27 C -0.17 -1.62 10.11 -39.44 -0.40 -2.02 16 28 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 29 N -0.48 -6.20 10.36 -13.25 -0.14 -6.34 16 30 C 0.12 1.45 10.33 -17.55 -0.18 1.27 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.35 6.13 7.55 -39.29 -0.30 5.84 16 37 H 0.35 6.01 8.58 -39.29 -0.34 5.67 16 38 H 0.40 4.33 6.85 -40.82 -0.28 4.05 16 39 H 0.12 1.01 6.50 -52.49 -0.34 0.67 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 44 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.15 1.63 7.33 -52.49 -0.38 1.25 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -33.33 396.38 -10.48 -43.80 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -6.57 Total: 13.96 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -5.26 Total: -14.76 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.31 Total: -55.22 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.33 -10.48 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424163087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.280 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds