Wall clock time and date at job start Tue Mar 31 2020 22:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48499 * 109.47195 * 240.00500 * 3 2 1 5 5 H 1.48503 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47344 * 120.00271 * 3 2 1 7 7 C 1.37878 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47340 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47468 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46836 * 304.99762 * 11 10 9 13 13 N 1.46907 * 109.47250 * 64.99568 * 11 10 9 14 14 C 1.50696 * 109.47074 * 184.99998 * 11 10 9 15 15 O 1.21287 * 119.99488 * 259.99601 * 14 11 10 16 16 N 1.34771 * 120.00236 * 80.00044 * 14 11 10 17 17 C 1.46505 * 120.00155 * 180.02562 * 16 14 11 18 18 H 1.08998 * 109.46918 * 34.98935 * 17 16 14 19 19 C 1.50692 * 109.47117 * 154.99948 * 17 16 14 20 20 C 1.38233 * 120.00489 * 39.72685 * 19 17 16 21 21 C 1.38231 * 120.00293 * 179.79091 * 20 19 17 22 22 C 1.38240 * 119.99777 * 0.45648 * 21 20 19 23 23 C 1.38236 * 120.00031 * 359.77578 * 22 21 20 24 24 C 1.38234 * 120.00037 * 0.02562 * 23 22 21 25 25 C 1.50706 * 109.46710 * 274.99671 * 17 16 14 26 26 C 1.38675 * 120.41497 * 139.99933 * 25 17 16 27 27 C 1.38631 * 118.41792 * 180.02562 * 26 25 17 28 28 C 1.38221 * 119.16077 * 0.25627 * 27 26 25 29 29 N 1.31860 * 120.76509 * 359.49797 * 28 27 26 30 30 C 1.31882 * 121.72556 * 0.49011 * 29 28 27 31 31 H 0.96999 * 120.00079 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47397 * 59.99758 * 9 7 2 33 33 H 1.09004 * 109.46915 * 299.99780 * 9 7 2 34 34 H 1.09001 * 109.47143 * 59.99516 * 10 9 7 35 35 H 1.09000 * 109.46494 * 300.00009 * 10 9 7 36 36 H 1.00898 * 110.99489 * 296.05108 * 13 11 10 37 37 H 1.00898 * 110.99534 * 60.00317 * 13 11 10 38 38 H 0.97000 * 119.99705 * 359.97438 * 16 14 11 39 39 H 1.07999 * 119.99804 * 359.97438 * 20 19 17 40 40 H 1.07997 * 120.00750 * 180.24943 * 21 20 19 41 41 H 1.08007 * 119.99800 * 179.78891 * 22 21 20 42 42 H 1.08000 * 119.99656 * 180.02562 * 23 22 21 43 43 H 1.07998 * 119.99904 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.79161 * 359.97438 * 26 25 17 45 45 H 1.08002 * 120.41548 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.62066 * 179.74470 * 28 27 26 47 47 H 1.07993 * 119.62126 * 179.75488 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7880 -5.0073 0.8405 13 7 0.7290 -5.1182 -1.2567 14 6 2.4550 -6.1298 0.1226 15 8 2.7871 -6.7531 -0.8634 16 7 2.9575 -6.4592 1.3290 17 6 3.9054 -7.5698 1.4493 18 1 4.5406 -7.6028 0.5641 19 6 4.7603 -7.3701 2.6741 20 6 4.1965 -6.8841 3.8389 21 6 4.9798 -6.7050 4.9636 22 6 6.3290 -7.0030 4.9208 23 6 6.8939 -7.4845 3.7546 24 6 6.1097 -7.6675 2.6311 25 6 3.1471 -8.8664 1.5719 26 6 3.5927 -10.0049 0.9176 27 6 2.8630 -11.1752 1.0587 28 6 1.7207 -11.1669 1.8369 29 7 1.3292 -10.0663 2.4485 30 6 1.9986 -8.9355 2.3373 31 1 -0.4850 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 2.8721 -3.6043 0.8894 35 1 2.8719 -3.6043 -0.8905 36 1 0.0243 -4.4001 -1.3329 37 1 1.3491 -5.1022 -2.0525 38 1 2.6921 -5.9605 2.1175 39 1 3.1433 -6.6471 3.8710 40 1 4.5386 -6.3291 5.8749 41 1 6.9418 -6.8598 5.7987 42 1 7.9479 -7.7177 3.7214 43 1 6.5511 -8.0432 1.7198 44 1 4.4865 -9.9804 0.3119 45 1 3.1806 -12.0807 0.5630 46 1 1.1443 -12.0734 1.9485 47 1 1.6450 -8.0532 2.8499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424163087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:15 Heat of formation + Delta-G solvation = -6.533646 kcal Electronic energy + Delta-G solvation = -28686.204399 eV Core-core repulsion = 24832.153307 eV Total energy + Delta-G solvation = -3854.051092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.84424 -40.60116 -39.96270 -37.25637 -36.48451 -34.84264 -33.61537 -32.62501 -31.83621 -31.68986 -31.51547 -28.54477 -27.17014 -25.48952 -24.63592 -23.69558 -23.48680 -22.50079 -21.66154 -21.11800 -19.06692 -18.29360 -18.20312 -17.90332 -17.40623 -16.98134 -16.58974 -16.38813 -16.15318 -15.76595 -15.74203 -15.64815 -15.14727 -14.88927 -14.78517 -14.53489 -14.38916 -14.24162 -13.99554 -13.97603 -13.77029 -13.45965 -13.33375 -12.93835 -12.80432 -12.67245 -12.54838 -12.15293 -11.94089 -11.81141 -11.72870 -11.32116 -10.89682 -10.72098 -10.63216 -10.55688 -10.28325 -9.97362 -9.84002 -9.67683 -9.64140 -8.21310 -6.31749 0.05149 0.29987 0.42522 0.48000 1.39792 1.41190 1.49145 1.56777 2.02532 2.39924 2.80120 2.86504 3.12323 3.47266 3.62872 3.68472 3.73290 3.82999 3.85358 4.00832 4.04403 4.10912 4.14130 4.15979 4.23206 4.28377 4.42168 4.59481 4.59916 4.65555 4.71167 4.80625 4.83791 5.00738 5.08025 5.10577 5.13507 5.18467 5.32361 5.46382 5.52697 5.60635 5.61640 5.65464 5.74041 5.80538 6.04262 6.06638 6.21134 6.42728 6.46473 6.83573 6.99406 7.15379 7.37334 8.89243 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010855 B = 0.002991 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.843274 B = 9360.118764 C =11050.148296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.119 4.119 11 C 0.081 3.919 12 H 0.108 0.892 13 N -0.830 5.830 14 C 0.533 3.467 15 O -0.561 6.561 16 N -0.714 5.714 17 C 0.241 3.759 18 H 0.095 0.905 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.146 4.146 26 C -0.071 4.071 27 C -0.166 4.166 28 C 0.082 3.918 29 N -0.511 5.511 30 C 0.100 3.900 31 H 0.264 0.736 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.353 0.647 37 H 0.344 0.656 38 H 0.411 0.589 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.150 0.850 45 H 0.167 0.833 46 H 0.180 0.820 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.157 -21.488 9.302 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.034 4.034 12 H 0.125 0.875 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.439 6.439 16 N -0.367 5.367 17 C 0.135 3.865 18 H 0.113 0.887 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.134 4.134 25 C -0.149 4.149 26 C -0.098 4.098 27 C -0.186 4.186 28 C -0.074 4.074 29 N -0.220 5.220 30 C -0.057 4.057 31 H 0.073 0.927 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.249 0.751 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.168 0.832 45 H 0.185 0.815 46 H 0.197 0.803 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.238 -22.551 9.384 26.887 hybrid contribution 0.984 2.361 -0.538 2.614 sum 12.222 -20.190 8.847 25.205 Atomic orbital electron populations 1.70051 1.07489 1.27827 1.51260 1.25856 0.95716 1.02944 0.94744 0.85610 0.78393 0.78678 0.79043 1.19625 1.20846 1.19195 1.21590 0.93347 0.92453 1.50974 0.92698 1.18959 0.94006 0.91978 0.95708 1.22122 0.98751 0.93608 1.01449 1.21403 0.94727 0.91317 0.95963 0.87461 1.58755 1.18392 1.55692 1.03306 1.20693 0.80636 0.83852 0.82814 1.90620 1.60740 1.54358 1.38178 1.46026 1.46447 1.34402 1.09846 1.18394 0.88430 0.82647 0.97018 0.88670 1.19694 0.94466 1.01680 0.94106 1.21115 1.00553 0.99512 0.92810 1.21427 0.94494 0.99515 0.98669 1.21552 0.95343 0.98175 0.98937 1.21441 1.00912 0.98945 0.92653 1.21204 0.92507 0.99840 0.99813 1.21122 0.97850 0.96417 0.99500 1.21760 0.99937 0.92000 0.96087 1.22461 0.96181 0.99860 1.00060 1.23302 0.94827 0.96724 0.92584 1.67693 1.32309 1.00069 1.21885 1.22562 0.91470 0.95947 0.95694 0.92729 0.97969 0.97981 0.91571 0.93625 0.83216 0.84285 0.75109 0.85470 0.84169 0.83853 0.83704 0.84722 0.83181 0.81532 0.80329 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 2 C 0.01 0.33 5.46 84.66 0.46 0.80 16 3 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -29.88 9.11 25.60 0.23 -29.64 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.50 4.74 29.85 0.14 1.64 16 10 C -0.12 -4.62 4.78 30.59 0.15 -4.47 16 11 C 0.08 2.72 3.21 44.17 0.14 2.86 16 12 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 13 N -0.83 -28.86 8.94 -171.79 -1.54 -30.39 16 14 C 0.53 17.01 7.04 87.66 0.62 17.62 16 15 O -0.56 -21.13 15.91 -3.05 -0.05 -21.18 16 16 N -0.71 -17.67 4.29 -449.69 -1.93 -19.60 16 17 C 0.24 5.38 2.40 43.50 0.10 5.48 16 18 H 0.10 2.33 7.33 -2.39 -0.02 2.31 16 19 C -0.10 -1.93 4.94 -19.87 -0.10 -2.03 16 20 C -0.12 -2.22 8.89 22.27 0.20 -2.03 16 21 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 22 C -0.12 -1.78 10.05 22.27 0.22 -1.56 16 23 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 24 C -0.12 -1.98 9.67 22.27 0.22 -1.76 16 25 C -0.15 -3.32 4.91 -19.77 -0.10 -3.42 16 26 C -0.07 -1.41 9.82 22.47 0.22 -1.19 16 27 C -0.17 -2.81 10.11 22.36 0.23 -2.58 16 28 C 0.08 1.61 11.18 84.68 0.95 2.56 16 29 N -0.51 -12.91 10.36 -195.85 -2.03 -14.94 16 30 C 0.10 2.45 10.33 84.67 0.87 3.32 16 31 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.00 0.10 6.87 -2.39 -0.02 0.09 16 33 H 0.00 0.09 8.14 -2.38 -0.02 0.08 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.35 12.45 7.55 -89.70 -0.68 11.77 16 37 H 0.34 12.13 8.58 -89.70 -0.77 11.36 16 38 H 0.41 8.68 6.85 -92.71 -0.64 8.04 16 39 H 0.13 2.06 6.50 -2.91 -0.02 2.04 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.13 1.90 8.04 -2.91 -0.02 1.87 16 44 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 47 H 0.15 3.36 7.33 -2.91 -0.02 3.34 16 Total: -1.00 -71.18 396.38 0.70 -70.48 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: -1.07 Total: 42.12 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 5.00 Total: -17.74 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -5.21 Total: -118.97 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -71.18 0.70 -70.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424163087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.944 kcal (2) G-P(sol) polarization free energy of solvation -71.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds