Wall clock time and date at job start Tue Mar 31 2020 22:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 C 1.50693 * 109.47115 * 179.97438 * 15 13 12 17 17 C 1.38281 * 119.93703 * 269.72561 * 16 15 13 18 18 C 1.38116 * 120.06860 * 179.76620 * 17 16 15 19 19 C 1.38826 * 119.93281 * 0.53155 * 18 17 16 20 20 N 1.40200 * 120.06745 * 179.70217 * 19 18 17 21 21 C 1.36567 * 125.66897 * 179.71803 * 20 19 18 22 22 C 1.34857 * 108.20236 * 179.86771 * 21 20 19 23 23 C 1.40942 * 107.46199 * 0.38346 * 22 21 20 24 24 C 1.34853 * 107.46954 * 359.76306 * 23 22 21 25 25 C 1.38830 * 119.86829 * 359.72461 * 19 18 17 26 26 C 1.38122 * 119.93483 * 359.97438 * 25 19 18 27 27 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 28 28 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 29 29 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 31 31 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 32 32 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 33 33 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 34 34 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 35 35 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 36 36 H 1.08007 * 119.96234 * 0.02562 * 17 16 15 37 37 H 1.07996 * 120.03545 * 180.25529 * 18 17 16 38 38 H 1.08000 * 125.89930 * 359.97438 * 21 20 19 39 39 H 1.07996 * 126.26607 * 180.14647 * 22 21 20 40 40 H 1.08001 * 126.26276 * 179.75593 * 23 22 21 41 41 H 1.07999 * 125.89418 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.03174 * 179.97438 * 25 19 18 43 43 H 1.08000 * 119.96787 * 179.97438 * 26 25 19 44 44 H 1.08996 * 109.61476 * 295.47839 * 27 12 11 45 45 H 1.09010 * 109.75120 * 175.04934 * 27 12 11 46 46 H 1.09003 * 109.61422 * 354.94072 * 28 9 7 47 47 H 1.08999 * 109.61487 * 115.28316 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 6 -0.0583 -8.1473 2.2133 17 6 0.3019 -8.7960 3.3802 18 6 -0.4897 -9.8114 3.8801 19 6 -1.6422 -10.1881 3.2039 20 7 -2.4444 -11.2227 3.7055 21 6 -3.5996 -11.6806 3.1392 22 6 -4.0789 -12.6792 3.9084 23 6 -3.1939 -12.8392 4.9935 24 6 -2.2035 -11.9362 4.8448 25 6 -1.9985 -9.5386 2.0298 26 6 -1.2062 -8.5196 1.5381 27 6 0.5344 -3.2876 2.4474 28 6 0.2343 -2.3368 1.2819 29 1 -0.4850 0.8401 -0.0004 30 1 1.0134 -4.0707 -0.8208 31 1 2.7052 -3.5085 -0.8012 32 1 3.0125 -4.2759 1.4845 33 1 2.2517 -5.6159 0.5906 34 1 0.7252 -7.0092 0.5866 35 1 1.8423 -7.2118 1.9575 36 1 1.2010 -8.5054 3.9034 37 1 -0.2100 -10.3149 4.7937 38 1 -4.0505 -11.3085 2.2311 39 1 -4.9785 -13.2490 3.7281 40 1 -3.2912 -13.5542 5.7972 41 1 -1.3646 -11.8010 5.5113 42 1 -2.8943 -9.8298 1.5014 43 1 -1.4826 -8.0142 0.6246 44 1 1.3246 -2.8665 3.0689 45 1 -0.3658 -3.4283 3.0458 46 1 0.0946 -1.3248 1.6621 47 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524814091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:44 Heat of formation + Delta-G solvation = 79.560423 kcal Electronic energy + Delta-G solvation = -28209.569637 eV Core-core repulsion = 24359.251865 eV Total energy + Delta-G solvation = -3850.317773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80536 -40.00417 -38.81456 -36.80147 -34.04620 -33.91403 -31.46723 -31.34714 -31.15930 -30.05033 -29.04398 -27.44895 -26.36900 -23.73760 -23.26953 -23.05916 -22.33950 -20.63303 -20.19709 -20.06420 -18.79948 -18.55757 -17.23029 -16.20098 -15.98602 -15.74456 -15.16523 -15.11314 -14.93336 -14.81373 -14.74570 -14.14766 -13.73534 -13.58249 -13.54726 -13.46920 -13.37745 -13.20506 -12.71974 -12.51910 -12.47999 -12.36470 -11.93776 -11.88893 -11.60003 -11.23665 -11.22341 -10.84461 -10.78332 -10.62991 -10.29708 -10.02447 -9.98359 -9.90611 -9.38810 -9.22792 -8.62962 -8.48654 -8.28298 -8.09827 -6.76072 -5.88920 -3.34729 0.72889 1.13195 2.24281 2.63076 2.76652 2.93081 3.32118 3.33162 3.38921 3.39641 3.67851 4.40493 4.42167 4.53088 4.54664 4.79510 4.85166 4.86427 4.92952 5.11023 5.20085 5.23436 5.25037 5.28654 5.39702 5.42316 5.58704 5.67714 5.71259 5.74588 5.82573 5.83452 5.95922 6.03440 6.10809 6.11576 6.29028 6.33636 6.38148 6.45072 6.57293 6.63999 6.67810 6.81690 6.97958 7.21252 7.22644 7.50400 7.67972 7.86377 8.32037 8.52240 9.07622 9.70386 10.26916 11.18433 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.001919 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.190769 B =14588.430996 C =14773.663692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.087 3.913 12 N -0.597 5.597 13 C 0.509 3.491 14 O -0.548 6.548 15 C -0.102 4.102 16 C -0.067 4.067 17 C -0.077 4.077 18 C -0.137 4.137 19 C 0.131 3.869 20 N -0.393 5.393 21 C -0.015 4.015 22 C -0.194 4.194 23 C -0.194 4.194 24 C -0.016 4.016 25 C -0.136 4.136 26 C -0.075 4.075 27 C 0.088 3.912 28 C 0.158 3.842 29 H 0.256 0.744 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.164 0.836 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -22.694 5.351 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.330 5.330 13 C 0.297 3.703 14 O -0.426 6.426 15 C -0.142 4.142 16 C -0.067 4.067 17 C -0.096 4.096 18 C -0.156 4.156 19 C 0.039 3.961 20 N -0.064 5.064 21 C -0.142 4.142 22 C -0.218 4.218 23 C -0.218 4.218 24 C -0.143 4.143 25 C -0.155 4.155 26 C -0.094 4.094 27 C -0.036 4.036 28 C 0.032 3.968 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.181 0.819 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.181 0.819 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.117 0.883 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.871 -22.274 5.631 22.991 hybrid contribution 0.396 0.945 -0.066 1.027 sum -0.475 -21.329 5.565 22.048 Atomic orbital electron populations 1.70013 1.05338 1.25933 1.53134 1.25098 0.95300 0.98626 1.00465 0.86333 0.78904 0.83108 0.78175 1.20808 1.21578 1.20923 1.19139 0.92696 0.84667 1.42392 0.91498 1.44000 1.36539 1.01595 1.49212 1.21363 0.98431 0.87473 0.92439 1.22489 0.88468 1.00309 0.92478 1.48082 1.32600 1.06908 1.45374 1.20366 0.83073 0.85101 0.81804 1.90683 1.28694 1.86824 1.36439 1.20714 1.00141 0.91054 1.02320 1.19408 0.95836 0.96020 0.95477 1.20830 0.99442 0.94458 0.94848 1.20710 0.94343 0.99842 1.00749 1.17870 0.92414 0.90497 0.95333 1.41672 1.18881 1.26007 1.19859 1.21920 0.89634 1.00638 1.01988 1.20978 1.02149 1.01324 0.97391 1.20975 0.96835 1.02646 1.01376 1.21900 1.03155 0.97676 0.91536 1.20738 1.01265 0.98008 0.95531 1.20874 0.93256 0.95355 0.99906 1.22491 0.99816 0.82818 0.98452 1.21187 0.88996 0.98615 0.88001 0.93352 0.95883 0.91451 0.91504 0.90901 0.87819 0.88048 0.85251 0.85385 0.81871 0.84285 0.84304 0.81921 0.85316 0.85086 0.92237 0.90183 0.88283 0.95894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.20 55.49 0.62 -24.79 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.91 20.93 29.59 -169.99 -5.03 15.90 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.75 9.57 -15.06 -0.14 -6.90 16 8 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -13.98 2.96 -171.77 -0.51 -14.49 16 10 C 0.13 2.44 6.70 -3.37 -0.02 2.42 16 11 C 0.09 1.31 6.52 -3.37 -0.02 1.28 16 12 N -0.60 -10.24 2.95 -172.21 -0.51 -10.75 16 13 C 0.51 8.28 7.69 -10.98 -0.08 8.20 16 14 O -0.55 -10.90 15.44 5.56 0.09 -10.81 16 15 C -0.10 -1.17 4.17 -29.04 -0.12 -1.29 16 16 C -0.07 -0.79 4.38 -104.59 -0.46 -1.24 16 17 C -0.08 -0.85 9.69 -39.61 -0.38 -1.23 16 18 C -0.14 -1.47 9.45 -39.41 -0.37 -1.84 16 19 C 0.13 1.50 6.62 -83.59 -0.55 0.95 16 20 N -0.39 -4.37 2.97 -60.93 -0.18 -4.55 16 21 C -0.01 -0.15 10.74 -16.64 -0.18 -0.33 16 22 C -0.19 -1.89 10.86 -39.76 -0.43 -2.32 16 23 C -0.19 -1.87 10.86 -39.76 -0.43 -2.30 16 24 C -0.02 -0.16 10.74 -16.65 -0.18 -0.34 16 25 C -0.14 -1.50 9.45 -39.40 -0.37 -1.87 16 26 C -0.08 -0.87 9.69 -39.61 -0.38 -1.25 16 27 C 0.09 1.72 6.59 -3.60 -0.02 1.70 16 28 C 0.16 3.70 5.51 -3.59 -0.02 3.68 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.80 5.91 -51.93 -0.31 0.50 16 34 H 0.10 1.01 7.67 -51.93 -0.40 0.62 16 35 H 0.10 0.91 7.85 -51.92 -0.41 0.50 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.13 1.10 6.71 -52.49 -0.35 0.75 16 38 H 0.16 1.29 7.01 -52.49 -0.37 0.92 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.16 1.24 7.01 -52.49 -0.37 0.87 16 42 H 0.13 1.17 6.71 -52.48 -0.35 0.81 16 43 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.60 7.00 -51.92 -0.36 1.24 16 46 H 0.10 2.57 6.00 -51.93 -0.31 2.26 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -32.67 381.35 -10.61 -43.28 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.57 Total: 3.11 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -4.27 Total: -2.65 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.58 Total: -54.58 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.67 -10.61 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524814091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.839 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds