Wall clock time and date at job start Tue Mar 31 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 C 1.50693 * 109.47115 * 179.97438 * 15 13 12 17 17 C 1.38281 * 119.93703 * 269.72561 * 16 15 13 18 18 C 1.38116 * 120.06860 * 179.76620 * 17 16 15 19 19 C 1.38826 * 119.93281 * 0.53155 * 18 17 16 20 20 N 1.40200 * 120.06745 * 179.70217 * 19 18 17 21 21 C 1.36567 * 125.66897 * 179.71803 * 20 19 18 22 22 C 1.34857 * 108.20236 * 179.86771 * 21 20 19 23 23 C 1.40942 * 107.46199 * 0.38346 * 22 21 20 24 24 C 1.34853 * 107.46954 * 359.76306 * 23 22 21 25 25 C 1.38830 * 119.86829 * 359.72461 * 19 18 17 26 26 C 1.38122 * 119.93483 * 359.97438 * 25 19 18 27 27 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 28 28 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 29 29 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 31 31 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 32 32 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 33 33 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 34 34 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 35 35 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 36 36 H 1.08007 * 119.96234 * 0.02562 * 17 16 15 37 37 H 1.07996 * 120.03545 * 180.25529 * 18 17 16 38 38 H 1.08000 * 125.89930 * 359.97438 * 21 20 19 39 39 H 1.07996 * 126.26607 * 180.14647 * 22 21 20 40 40 H 1.08001 * 126.26276 * 179.75593 * 23 22 21 41 41 H 1.07999 * 125.89418 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.03174 * 179.97438 * 25 19 18 43 43 H 1.08000 * 119.96787 * 179.97438 * 26 25 19 44 44 H 1.08996 * 109.61476 * 295.47839 * 27 12 11 45 45 H 1.09010 * 109.75120 * 175.04934 * 27 12 11 46 46 H 1.09003 * 109.61422 * 354.94072 * 28 9 7 47 47 H 1.08999 * 109.61487 * 115.28316 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 6 -0.0583 -8.1473 2.2133 17 6 0.3019 -8.7960 3.3802 18 6 -0.4897 -9.8114 3.8801 19 6 -1.6422 -10.1881 3.2039 20 7 -2.4444 -11.2227 3.7055 21 6 -3.5996 -11.6806 3.1392 22 6 -4.0789 -12.6792 3.9084 23 6 -3.1939 -12.8392 4.9935 24 6 -2.2035 -11.9362 4.8448 25 6 -1.9985 -9.5386 2.0298 26 6 -1.2062 -8.5196 1.5381 27 6 0.5344 -3.2876 2.4474 28 6 0.2343 -2.3368 1.2819 29 1 -0.4850 0.8401 -0.0004 30 1 1.0134 -4.0707 -0.8208 31 1 2.7052 -3.5085 -0.8012 32 1 3.0125 -4.2759 1.4845 33 1 2.2517 -5.6159 0.5906 34 1 0.7252 -7.0092 0.5866 35 1 1.8423 -7.2118 1.9575 36 1 1.2010 -8.5054 3.9034 37 1 -0.2100 -10.3149 4.7937 38 1 -4.0505 -11.3085 2.2311 39 1 -4.9785 -13.2490 3.7281 40 1 -3.2912 -13.5542 5.7972 41 1 -1.3646 -11.8010 5.5113 42 1 -2.8943 -9.8298 1.5014 43 1 -1.4826 -8.0142 0.6246 44 1 1.3246 -2.8665 3.0689 45 1 -0.3658 -3.4283 3.0458 46 1 0.0946 -1.3248 1.6621 47 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524814091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:43 Heat of formation + Delta-G solvation = 63.110027 kcal Electronic energy + Delta-G solvation = -28210.282980 eV Core-core repulsion = 24359.251865 eV Total energy + Delta-G solvation = -3851.031115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54368 -41.19963 -39.78523 -38.34002 -35.61801 -34.86888 -33.06892 -32.43827 -32.24953 -31.30864 -29.76288 -28.86257 -27.59908 -25.41667 -24.46689 -24.05241 -23.40393 -22.07425 -20.93164 -20.91618 -20.06757 -19.47059 -18.74280 -17.78759 -17.11326 -16.75310 -16.66935 -16.10348 -15.92701 -15.88524 -15.74662 -15.47776 -15.24671 -15.00756 -14.89771 -14.61137 -14.29214 -14.23257 -14.05137 -13.38732 -13.36397 -13.22731 -13.17950 -13.03527 -12.90091 -12.65987 -12.48201 -12.43949 -12.29605 -12.00500 -11.98892 -11.84272 -11.67362 -10.95827 -10.60506 -10.56388 -10.02802 -9.79001 -9.21872 -8.89972 -8.65058 -7.88363 -5.37080 -0.08595 0.33147 1.46251 1.48093 1.50789 1.57147 1.69128 1.89114 2.04710 2.11777 2.51250 2.78280 3.26547 3.61184 3.65615 3.65977 3.78700 3.80710 4.09058 4.10367 4.24946 4.26910 4.31116 4.35798 4.42536 4.49357 4.52243 4.56736 4.65179 4.67556 4.70132 4.80213 4.84249 4.92455 4.98336 5.08121 5.08265 5.21324 5.27673 5.31284 5.37679 5.47114 5.55780 5.61365 5.69216 5.78839 5.97390 6.24970 6.35514 6.47774 6.57517 7.09603 7.23980 7.80077 8.32868 9.16496 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.001919 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.190769 B =14588.430996 C =14773.663692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.123 3.877 11 C 0.098 3.902 12 N -0.603 5.603 13 C 0.508 3.492 14 O -0.589 6.589 15 C -0.092 4.092 16 C -0.083 4.083 17 C -0.082 4.082 18 C -0.144 4.144 19 C 0.118 3.882 20 N -0.403 5.403 21 C -0.034 4.034 22 C -0.203 4.203 23 C -0.204 4.204 24 C -0.031 4.031 25 C -0.146 4.146 26 C -0.087 4.087 27 C 0.103 3.897 28 C 0.170 3.830 29 H 0.250 0.750 30 H 0.017 0.983 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.178 0.822 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.182 0.818 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.066 0.934 47 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -24.719 5.460 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.391 4.391 8 H 0.094 0.906 9 N -0.333 5.333 10 C -0.003 4.003 11 C -0.026 4.026 12 N -0.335 5.335 13 C 0.298 3.702 14 O -0.470 6.470 15 C -0.131 4.131 16 C -0.084 4.084 17 C -0.101 4.101 18 C -0.163 4.163 19 C 0.026 3.974 20 N -0.075 5.075 21 C -0.160 4.160 22 C -0.227 4.227 23 C -0.228 4.228 24 C -0.157 4.157 25 C -0.166 4.166 26 C -0.106 4.106 27 C -0.021 4.021 28 C 0.043 3.957 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.195 0.805 39 H 0.174 0.826 40 H 0.175 0.825 41 H 0.199 0.801 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 1.229 -24.351 5.726 25.046 hybrid contribution -0.298 1.469 -0.104 1.503 sum 0.930 -22.882 5.622 23.581 Atomic orbital electron populations 1.70181 1.06883 1.26015 1.55285 1.25864 0.95947 1.01798 1.01186 0.85324 0.77480 0.79066 0.78462 1.19832 1.22601 1.20311 1.19538 0.93200 0.85667 1.40728 0.90574 1.44257 1.36248 1.02955 1.49797 1.21617 0.98561 0.85957 0.94182 1.22522 0.87612 1.02025 0.90417 1.48166 1.33394 1.06116 1.45860 1.21250 0.81954 0.86200 0.80843 1.90669 1.30492 1.87512 1.38338 1.20753 1.01677 0.87425 1.03230 1.19562 0.96232 0.96493 0.96096 1.21108 1.00088 0.94222 0.94640 1.20984 0.94079 0.99922 1.01351 1.18114 0.92862 0.90759 0.95642 1.41823 1.19154 1.26176 1.20310 1.22333 0.89772 1.01074 1.02839 1.21326 1.02762 1.01305 0.97331 1.21329 0.96668 1.02913 1.01855 1.22362 1.04016 0.97689 0.91647 1.20946 1.01809 0.98058 0.95757 1.21085 0.93480 0.95605 1.00426 1.22023 0.99654 0.83830 0.96623 1.20857 0.88176 0.97688 0.88946 0.94137 0.96459 0.90128 0.90612 0.85771 0.85601 0.84572 0.83428 0.83632 0.80456 0.82624 0.82505 0.80062 0.84125 0.84396 0.91853 0.91153 0.91581 0.99132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.83 11.20 21.65 0.24 -54.59 16 2 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 3 Si 0.97 43.48 29.59 68.60 2.03 45.51 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.26 -13.55 9.57 84.03 0.80 -12.74 16 8 H 0.08 3.74 7.89 -2.91 -0.02 3.71 16 9 N -0.61 -28.80 2.96 -697.35 -2.06 -30.86 16 10 C 0.12 4.36 6.70 86.56 0.58 4.94 16 11 C 0.10 2.56 6.52 86.56 0.56 3.13 16 12 N -0.60 -19.53 2.95 -817.15 -2.41 -21.94 16 13 C 0.51 15.44 7.69 87.66 0.67 16.11 16 14 O -0.59 -23.08 15.44 -3.02 -0.05 -23.13 16 15 C -0.09 -1.74 4.17 29.10 0.12 -1.62 16 16 C -0.08 -1.76 4.38 -19.85 -0.09 -1.85 16 17 C -0.08 -1.61 9.69 22.25 0.22 -1.40 16 18 C -0.14 -2.84 9.45 22.38 0.21 -2.63 16 19 C 0.12 2.59 6.62 38.08 0.25 2.84 16 20 N -0.40 -8.57 2.97 -346.67 -1.03 -9.60 16 21 C -0.03 -0.66 10.74 83.18 0.89 0.23 16 22 C -0.20 -3.72 10.86 22.16 0.24 -3.47 16 23 C -0.20 -3.65 10.86 22.15 0.24 -3.41 16 24 C -0.03 -0.58 10.74 83.18 0.89 0.32 16 25 C -0.15 -3.10 9.45 22.38 0.21 -2.89 16 26 C -0.09 -1.89 9.69 22.25 0.22 -1.67 16 27 C 0.10 4.09 6.59 86.42 0.57 4.66 16 28 C 0.17 8.22 5.51 86.42 0.48 8.69 16 29 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 2.63 7.93 -2.39 -0.02 2.61 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.12 2.03 5.91 -2.39 -0.01 2.02 16 34 H 0.13 1.88 7.67 -2.39 -0.02 1.86 16 35 H 0.14 1.68 7.85 -2.38 -0.02 1.66 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.15 2.21 6.71 -2.91 -0.02 2.19 16 38 H 0.18 2.68 7.01 -2.91 -0.02 2.66 16 39 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.18 2.45 7.01 -2.91 -0.02 2.43 16 42 H 0.14 2.46 6.71 -2.91 -0.02 2.44 16 43 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 44 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 45 H 0.07 2.90 7.00 -2.38 -0.02 2.89 16 46 H 0.07 3.61 6.00 -2.39 -0.01 3.60 16 47 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 Total: -1.00 -73.39 381.35 5.19 -68.20 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.97 Total: 19.61 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 7.49 Total: 6.81 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -5.26 Total: -117.00 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -73.39 5.19 -68.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524814091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.314 kcal (2) G-P(sol) polarization free energy of solvation -73.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds