Wall clock time and date at job start Tue Mar 31 2020 22:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39768 * 120.08006 * 10.46586 * 3 2 1 5 5 C 1.37698 * 119.91880 * 179.97438 * 4 3 2 6 6 C 1.39105 * 120.07803 * 359.97438 * 5 4 3 7 7 N 1.39552 * 119.91984 * 179.97438 * 6 5 4 8 8 C 1.46755 * 124.34946 * 186.03878 * 7 6 5 9 9 C 1.54485 * 105.47441 * 197.03635 * 8 7 6 10 10 C 1.54634 * 101.76226 * 334.58458 * 9 8 7 11 11 H 1.09002 * 110.59530 * 266.06462 * 10 9 8 12 12 N 1.46893 * 110.48445 * 143.47473 * 10 9 8 13 13 C 1.46849 * 111.00451 * 68.95115 * 12 10 9 14 14 C 1.53028 * 109.52881 * 174.15907 * 13 12 10 15 15 C 1.53125 * 109.27816 * 59.17730 * 14 13 12 16 16 C 1.53112 * 109.16138 * 302.34945 * 15 14 13 17 17 H 1.09006 * 109.50306 * 297.71065 * 16 15 14 18 18 C 1.50702 * 109.50418 * 177.63252 * 16 15 14 19 19 H 1.07995 * 120.00453 * 240.07590 * 18 16 15 20 20 C 1.37887 * 119.99794 * 60.07607 * 18 16 15 21 21 N 1.31515 * 119.99819 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99823 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47227 * 60.00357 * 22 20 18 24 24 H 1.48498 * 109.47088 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47358 * 300.00231 * 22 20 18 26 26 C 1.46931 * 110.99016 * 304.72233 * 12 10 9 27 27 C 1.34424 * 124.34782 * 6.05941 * 7 6 5 28 28 O 1.21277 * 124.94062 * 359.54120 * 27 7 6 29 29 C 1.39107 * 120.16257 * 0.25652 * 6 5 4 30 30 C 1.37691 * 120.07748 * 359.48631 * 29 6 5 31 31 H 1.07995 * 120.04292 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.96433 * 179.97438 * 5 4 3 33 33 H 1.09003 * 110.25045 * 316.03521 * 8 7 6 34 34 H 1.08998 * 110.24584 * 78.03657 * 8 7 6 35 35 H 1.08994 * 110.97308 * 216.46563 * 9 8 7 36 36 H 1.08998 * 110.97145 * 92.70034 * 9 8 7 37 37 H 1.08997 * 109.45905 * 54.13871 * 13 12 10 38 38 H 1.08997 * 109.46118 * 294.17990 * 13 12 10 39 39 H 1.09004 * 109.50311 * 299.23840 * 14 13 12 40 40 H 1.08995 * 109.53908 * 179.13868 * 14 13 12 41 41 H 1.09007 * 109.52076 * 182.44287 * 15 14 13 42 42 H 1.09003 * 109.51760 * 62.25212 * 15 14 13 43 43 H 0.96998 * 119.99623 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.45515 * 65.83619 * 26 12 10 45 45 H 1.09002 * 109.51304 * 305.84623 * 26 12 10 46 46 H 1.07999 * 119.95859 * 179.71874 * 29 6 5 47 47 H 1.08002 * 120.04525 * 180.25059 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2690 -1.1884 -0.2197 5 6 4.6460 -1.1838 -0.2195 6 6 5.3392 0.0023 -0.0016 7 7 6.7347 0.0030 -0.0015 8 6 7.5622 1.1654 0.3416 9 6 8.9702 0.8457 -0.2078 10 6 8.9598 -0.7005 -0.2210 11 1 9.3905 -1.0947 0.6995 12 7 9.6914 -1.2096 -1.3887 13 6 11.1302 -0.9432 -1.2655 14 6 11.8751 -1.6120 -2.4230 15 6 11.3467 -1.0605 -3.7501 16 6 9.8379 -1.3076 -3.8319 17 1 9.6435 -2.3801 -3.8173 18 6 9.2997 -0.7161 -5.1093 19 1 8.5424 0.0529 -5.0712 20 6 9.7741 -1.1568 -6.3266 21 7 10.6960 -2.0937 -6.3730 22 14 9.1065 -0.4242 -7.9099 23 1 9.3711 1.0369 -7.9294 24 1 9.7742 -1.0642 -9.0716 25 1 7.6428 -0.6632 -7.9874 26 6 9.1512 -0.6475 -2.6341 27 6 7.4937 -1.0609 -0.3163 28 8 7.0654 -2.1512 -0.6303 29 6 4.6448 1.1867 0.2222 30 6 3.2679 1.1907 0.2182 31 1 2.7315 -2.1094 -0.3902 32 1 5.1885 -2.1023 -0.3888 33 1 7.1669 2.0633 -0.1334 34 1 7.5999 1.2954 1.4232 35 1 9.7445 1.2249 0.4590 36 1 9.0956 1.2435 -1.2148 37 1 11.4941 -1.3441 -0.3195 38 1 11.3042 0.1324 -1.2948 39 1 11.7128 -2.6892 -2.3862 40 1 12.9414 -1.4016 -2.3403 41 1 11.8441 -1.5655 -4.5783 42 1 11.5439 0.0102 -3.8039 43 1 11.0294 -2.4039 -7.2294 44 1 9.3345 0.4267 -2.6571 45 1 8.0783 -0.8338 -2.6825 46 1 5.1864 2.1049 0.3956 47 1 2.7294 2.1113 0.3880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:04 Heat of formation + Delta-G solvation = 38.497023 kcal Electronic energy + Delta-G solvation = -29338.938492 eV Core-core repulsion = 25486.840077 eV Total energy + Delta-G solvation = -3852.098415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49330 -39.38950 -37.97294 -36.81761 -36.31148 -34.19233 -32.63369 -31.40462 -31.04828 -29.97954 -29.16410 -27.09408 -25.04130 -24.22743 -23.89104 -22.59980 -21.63029 -21.19429 -19.82155 -19.13387 -18.52697 -17.80324 -16.95043 -16.50317 -15.83925 -15.27762 -14.94899 -14.71339 -14.67185 -14.32769 -14.23863 -14.03896 -13.99808 -13.83828 -13.77473 -13.29845 -13.05617 -12.90927 -12.78846 -12.67053 -12.39910 -12.28819 -12.24940 -11.81623 -11.67943 -11.42858 -11.34491 -10.94403 -10.73483 -10.71696 -10.39635 -10.16901 -9.89783 -9.64958 -9.51796 -9.33501 -9.15002 -8.76149 -8.32983 -8.17223 -7.83645 -5.99639 -4.06032 0.51806 1.09013 2.30869 2.50641 2.51855 2.90878 3.30880 3.36077 3.38322 3.68858 3.74725 3.95140 4.11599 4.40522 4.49329 4.58868 4.60716 4.69833 4.76793 4.92244 5.14028 5.15951 5.26111 5.29714 5.30586 5.52978 5.55960 5.64765 5.68302 5.70717 5.79940 5.91589 5.96347 6.10932 6.15410 6.18821 6.26251 6.40147 6.61042 6.65952 6.73269 6.78114 6.88312 7.12683 7.27714 7.32693 7.44627 7.59760 7.73105 7.97813 8.05089 8.13262 8.43069 8.97175 9.58360 11.06429 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.003269 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.142664 B = 8562.297062 C =10288.548088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.263 3.737 3 C -0.071 4.071 4 C -0.035 4.035 5 C -0.163 4.163 6 C 0.211 3.789 7 N -0.564 5.564 8 C 0.100 3.900 9 C -0.176 4.176 10 C 0.059 3.941 11 H 0.118 0.882 12 N -0.515 5.515 13 C 0.065 3.935 14 C -0.118 4.118 15 C -0.111 4.111 16 C 0.057 3.943 17 H 0.036 0.964 18 C -0.516 4.516 19 H 0.051 0.949 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.065 3.935 27 C 0.528 3.472 28 O -0.475 6.475 29 C -0.167 4.167 30 C -0.038 4.038 31 H 0.136 0.864 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.261 0.739 44 H 0.026 0.974 45 H 0.057 0.943 46 H 0.136 0.864 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 8.074 17.518 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.052 4.052 3 C -0.076 4.076 4 C -0.056 4.056 5 C -0.183 4.183 6 C 0.114 3.886 7 N -0.287 5.287 8 C -0.022 4.022 9 C -0.215 4.215 10 C -0.054 4.054 11 H 0.135 0.865 12 N -0.238 5.238 13 C -0.062 4.062 14 C -0.156 4.156 15 C -0.149 4.149 16 C 0.039 3.961 17 H 0.054 0.946 18 C -0.555 4.555 19 H 0.070 0.930 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.718 3.282 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.062 4.062 27 C 0.316 3.684 28 O -0.346 6.346 29 C -0.188 4.188 30 C -0.059 4.059 31 H 0.154 0.846 32 H 0.184 0.816 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.154 0.846 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.613 6.811 17.176 19.311 hybrid contribution 0.187 1.462 -0.879 1.716 sum -5.426 8.272 16.298 19.065 Atomic orbital electron populations 1.81243 1.12151 1.07529 1.09817 1.25707 0.92617 0.93607 0.93246 1.15975 0.84268 0.95589 1.11777 1.21070 0.93492 0.96714 0.94302 1.21658 0.93964 0.99211 1.03489 1.18060 0.81572 0.94489 0.94518 1.45887 1.03685 1.14404 1.64765 1.22238 0.90618 0.88382 1.00976 1.23439 0.95905 0.97842 1.04359 1.22421 0.91823 0.92918 0.98259 0.86482 1.62077 1.02919 1.58171 1.00672 1.22056 0.86931 0.98011 0.99229 1.21691 0.97162 1.00778 0.95996 1.21673 0.99583 0.98414 0.95265 1.18636 0.91021 0.96820 0.89668 0.94596 1.21059 1.22160 1.21611 0.90668 0.93029 1.24912 0.94984 0.94903 0.98878 1.69872 1.28691 1.28644 1.25362 0.86700 0.79276 0.79249 0.83018 1.20375 1.21259 1.20276 1.22459 0.98790 0.96000 0.88924 1.20969 0.89131 0.83192 0.75116 1.90625 1.77522 1.23092 1.43364 1.20661 0.93873 0.96872 1.07407 1.20869 0.93237 0.96588 0.95230 0.84593 0.81619 0.89447 0.89905 0.88668 0.88329 0.92041 0.95260 0.91857 0.93182 0.88948 0.95100 0.92942 0.95564 0.92478 0.84644 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.75 18.54 41.83 0.78 -4.98 16 2 C 0.26 2.92 15.33 -22.48 -0.34 2.58 16 3 C -0.07 -0.69 5.74 -106.82 -0.61 -1.30 16 4 C -0.03 -0.35 9.75 -39.21 -0.38 -0.73 16 5 C -0.16 -1.94 9.26 -39.46 -0.37 -2.30 16 6 C 0.21 2.32 6.60 -83.70 -0.55 1.77 16 7 N -0.56 -6.38 3.13 -112.25 -0.35 -6.73 16 8 C 0.10 0.77 6.49 -3.12 -0.02 0.75 16 9 C -0.18 -1.64 5.76 -25.09 -0.14 -1.78 16 10 C 0.06 0.74 3.03 -67.73 -0.21 0.54 16 11 H 0.12 1.25 8.09 -51.93 -0.42 0.83 16 12 N -0.51 -8.62 4.67 -226.64 -1.06 -9.68 16 13 C 0.07 0.98 5.21 -3.84 -0.02 0.96 16 14 C -0.12 -2.12 6.09 -26.65 -0.16 -2.29 16 15 C -0.11 -2.49 5.03 -26.61 -0.13 -2.62 16 16 C 0.06 1.39 2.26 -91.69 -0.21 1.19 16 17 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.52 -13.88 8.56 -34.44 -0.29 -14.17 16 19 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.96 11.36 55.43 0.63 -24.33 16 22 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.06 1.29 4.00 -3.79 -0.02 1.27 16 27 C 0.53 7.64 6.00 -10.86 -0.07 7.57 16 28 O -0.48 -8.58 14.75 5.56 0.08 -8.50 16 29 C -0.17 -1.39 9.39 -39.46 -0.37 -1.76 16 30 C -0.04 -0.31 9.75 -39.21 -0.38 -0.69 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.17 2.32 5.23 -52.49 -0.27 2.05 16 33 H 0.09 0.54 7.21 -51.93 -0.37 0.17 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 1.13 5.61 -51.93 -0.29 0.84 16 37 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.03 0.41 7.62 -51.93 -0.40 0.02 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 2.35 6.16 -51.93 -0.32 2.03 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.03 0.50 6.08 -51.93 -0.32 0.19 16 45 H 0.06 1.23 6.91 -51.93 -0.36 0.87 16 46 H 0.14 0.79 6.72 -52.49 -0.35 0.44 16 47 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -31.60 375.56 -10.10 -41.70 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.45 Total: 0.16 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -4.37 Total: -9.34 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.00 Total: -45.71 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.60 -10.10 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.195 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds