Wall clock time and date at job start Tue Mar 31 2020 22:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39768 * 120.08006 * 10.46586 * 3 2 1 5 5 C 1.37698 * 119.91880 * 179.97438 * 4 3 2 6 6 C 1.39105 * 120.07803 * 359.97438 * 5 4 3 7 7 N 1.39552 * 119.91984 * 179.97438 * 6 5 4 8 8 C 1.46755 * 124.34946 * 186.03878 * 7 6 5 9 9 C 1.54485 * 105.47441 * 197.03635 * 8 7 6 10 10 C 1.54634 * 101.76226 * 334.58458 * 9 8 7 11 11 H 1.09002 * 110.59530 * 266.06462 * 10 9 8 12 12 N 1.46893 * 110.48445 * 143.47473 * 10 9 8 13 13 C 1.46849 * 111.00451 * 68.95115 * 12 10 9 14 14 C 1.53028 * 109.52881 * 174.15907 * 13 12 10 15 15 C 1.53125 * 109.27816 * 59.17730 * 14 13 12 16 16 C 1.53112 * 109.16138 * 302.34945 * 15 14 13 17 17 H 1.09006 * 109.50306 * 297.71065 * 16 15 14 18 18 C 1.50702 * 109.50418 * 177.63252 * 16 15 14 19 19 H 1.07995 * 120.00453 * 240.07590 * 18 16 15 20 20 C 1.37887 * 119.99794 * 60.07607 * 18 16 15 21 21 N 1.31515 * 119.99819 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99823 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47227 * 60.00357 * 22 20 18 24 24 H 1.48498 * 109.47088 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47358 * 300.00231 * 22 20 18 26 26 C 1.46931 * 110.99016 * 304.72233 * 12 10 9 27 27 C 1.34424 * 124.34782 * 6.05941 * 7 6 5 28 28 O 1.21277 * 124.94062 * 359.54120 * 27 7 6 29 29 C 1.39107 * 120.16257 * 0.25652 * 6 5 4 30 30 C 1.37691 * 120.07748 * 359.48631 * 29 6 5 31 31 H 1.07995 * 120.04292 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.96433 * 179.97438 * 5 4 3 33 33 H 1.09003 * 110.25045 * 316.03521 * 8 7 6 34 34 H 1.08998 * 110.24584 * 78.03657 * 8 7 6 35 35 H 1.08994 * 110.97308 * 216.46563 * 9 8 7 36 36 H 1.08998 * 110.97145 * 92.70034 * 9 8 7 37 37 H 1.08997 * 109.45905 * 54.13871 * 13 12 10 38 38 H 1.08997 * 109.46118 * 294.17990 * 13 12 10 39 39 H 1.09004 * 109.50311 * 299.23840 * 14 13 12 40 40 H 1.08995 * 109.53908 * 179.13868 * 14 13 12 41 41 H 1.09007 * 109.52076 * 182.44287 * 15 14 13 42 42 H 1.09003 * 109.51760 * 62.25212 * 15 14 13 43 43 H 0.96998 * 119.99623 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.45515 * 65.83619 * 26 12 10 45 45 H 1.09002 * 109.51304 * 305.84623 * 26 12 10 46 46 H 1.07999 * 119.95859 * 179.71874 * 29 6 5 47 47 H 1.08002 * 120.04525 * 180.25059 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2690 -1.1884 -0.2197 5 6 4.6460 -1.1838 -0.2195 6 6 5.3392 0.0023 -0.0016 7 7 6.7347 0.0030 -0.0015 8 6 7.5622 1.1654 0.3416 9 6 8.9702 0.8457 -0.2078 10 6 8.9598 -0.7005 -0.2210 11 1 9.3905 -1.0947 0.6995 12 7 9.6914 -1.2096 -1.3887 13 6 11.1302 -0.9432 -1.2655 14 6 11.8751 -1.6120 -2.4230 15 6 11.3467 -1.0605 -3.7501 16 6 9.8379 -1.3076 -3.8319 17 1 9.6435 -2.3801 -3.8173 18 6 9.2997 -0.7161 -5.1093 19 1 8.5424 0.0529 -5.0712 20 6 9.7741 -1.1568 -6.3266 21 7 10.6960 -2.0937 -6.3730 22 14 9.1065 -0.4242 -7.9099 23 1 9.3711 1.0369 -7.9294 24 1 9.7742 -1.0642 -9.0716 25 1 7.6428 -0.6632 -7.9874 26 6 9.1512 -0.6475 -2.6341 27 6 7.4937 -1.0609 -0.3163 28 8 7.0654 -2.1512 -0.6303 29 6 4.6448 1.1867 0.2222 30 6 3.2679 1.1907 0.2182 31 1 2.7315 -2.1094 -0.3902 32 1 5.1885 -2.1023 -0.3888 33 1 7.1669 2.0633 -0.1334 34 1 7.5999 1.2954 1.4232 35 1 9.7445 1.2249 0.4590 36 1 9.0956 1.2435 -1.2148 37 1 11.4941 -1.3441 -0.3195 38 1 11.3042 0.1324 -1.2948 39 1 11.7128 -2.6892 -2.3862 40 1 12.9414 -1.4016 -2.3403 41 1 11.8441 -1.5655 -4.5783 42 1 11.5439 0.0102 -3.8039 43 1 11.0294 -2.4039 -7.2294 44 1 9.3345 0.4267 -2.6571 45 1 8.0783 -0.8338 -2.6825 46 1 5.1864 2.1049 0.3956 47 1 2.7294 2.1113 0.3880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:04 Heat of formation + Delta-G solvation = 19.269267 kcal Electronic energy + Delta-G solvation = -29339.772270 eV Core-core repulsion = 25486.840077 eV Total energy + Delta-G solvation = -3852.932193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41637 -40.31965 -39.25414 -37.81881 -37.30723 -35.69758 -34.11821 -32.29254 -32.11588 -31.69419 -30.01985 -28.10974 -26.96107 -25.17620 -24.81504 -23.68379 -23.13109 -22.25256 -20.84147 -20.04117 -19.94136 -18.73300 -18.45713 -17.75488 -17.04587 -16.55659 -16.20505 -15.81620 -15.66587 -15.57287 -15.22339 -15.14707 -15.00758 -14.82946 -14.61709 -14.54751 -14.37234 -14.23429 -13.85062 -13.81619 -13.67848 -13.42763 -13.19917 -13.07051 -12.84777 -12.70881 -12.64823 -12.52942 -12.28124 -12.10725 -11.79833 -11.64544 -11.36592 -11.12950 -10.90083 -10.79413 -10.55817 -10.37561 -10.07155 -9.07471 -8.99828 -8.08639 -6.23095 -0.30444 0.35800 1.32369 1.39700 1.41810 1.48847 1.61570 1.70761 2.03244 2.41504 2.88620 2.90066 2.96486 3.18367 3.23645 3.65253 3.83199 3.89159 3.94423 4.03181 4.20431 4.24050 4.28244 4.35988 4.40480 4.52744 4.56587 4.63949 4.66498 4.76546 4.88123 4.95432 4.97317 4.99658 5.05639 5.11201 5.13032 5.16340 5.25251 5.33902 5.42391 5.43424 5.52839 5.63370 5.89295 5.91958 6.00024 6.12698 6.21936 6.30561 6.43040 6.45188 6.89674 6.99429 7.44818 8.95777 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.003269 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.142664 B = 8562.297062 C =10288.548088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.286 3.714 3 C -0.075 4.075 4 C -0.036 4.036 5 C -0.188 4.188 6 C 0.193 3.807 7 N -0.561 5.561 8 C 0.096 3.904 9 C -0.164 4.164 10 C 0.056 3.944 11 H 0.145 0.855 12 N -0.540 5.540 13 C 0.071 3.929 14 C -0.114 4.114 15 C -0.102 4.102 16 C 0.053 3.947 17 H -0.018 1.018 18 C -0.537 4.537 19 H 0.049 0.951 20 C 0.015 3.985 21 N -0.915 5.915 22 Si 0.951 3.049 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.277 1.277 26 C 0.090 3.910 27 C 0.513 3.487 28 O -0.531 6.531 29 C -0.152 4.152 30 C -0.025 4.025 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.260 0.740 44 H 0.039 0.961 45 H 0.029 0.971 46 H 0.173 0.827 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 11.911 19.867 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.028 4.028 3 C -0.080 4.080 4 C -0.057 4.057 5 C -0.208 4.208 6 C 0.096 3.904 7 N -0.284 5.284 8 C -0.024 4.024 9 C -0.203 4.203 10 C -0.056 4.056 11 H 0.162 0.838 12 N -0.264 5.264 13 C -0.056 4.056 14 C -0.152 4.152 15 C -0.141 4.141 16 C 0.035 3.965 17 H 0.000 1.000 18 C -0.575 4.575 19 H 0.067 0.933 20 C -0.184 4.184 21 N -0.554 5.554 22 Si 0.777 3.223 23 H -0.190 1.190 24 H -0.209 1.209 25 H -0.203 1.203 26 C -0.037 4.037 27 C 0.302 3.698 28 O -0.405 6.405 29 C -0.172 4.172 30 C -0.046 4.046 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.190 0.810 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.161 10.699 19.556 22.881 hybrid contribution 0.025 0.219 -1.590 1.605 sum -5.135 10.917 17.967 21.642 Atomic orbital electron populations 1.81268 1.13320 1.08865 1.11410 1.25818 0.92628 0.92377 0.92014 1.16029 0.83433 0.96154 1.12401 1.21081 0.92941 0.97513 0.94179 1.21493 0.94646 0.99127 1.05557 1.18312 0.81727 0.95124 0.95201 1.45991 1.03992 1.14667 1.63719 1.22627 0.88860 0.87461 1.03442 1.23409 0.98347 0.94312 1.04269 1.22575 0.90153 0.95767 0.97090 0.83806 1.61841 1.04297 1.59498 1.00755 1.22065 0.85310 0.99072 0.99148 1.21619 0.99178 0.99525 0.94880 1.21441 0.97784 0.98091 0.96754 1.18554 0.93087 0.93706 0.91194 1.00003 1.21467 1.22141 1.21660 0.92263 0.93264 1.25705 0.95264 0.95330 1.02094 1.70034 1.29719 1.29738 1.25909 0.85721 0.78378 0.79086 0.79141 1.18977 1.20903 1.20285 1.21916 0.96538 0.96100 0.89181 1.21485 0.90506 0.83178 0.74604 1.90607 1.78554 1.25446 1.45942 1.20995 0.93877 0.96864 1.05463 1.21249 0.93291 0.96905 0.93124 0.84158 0.84597 0.87217 0.86132 0.84728 0.90497 0.88405 0.93152 0.94015 0.90445 0.92775 0.94913 0.93072 0.94304 0.95272 0.80993 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.31 18.54 19.00 0.35 -11.96 16 2 C 0.29 6.04 15.33 88.33 1.35 7.40 16 3 C -0.08 -1.34 5.74 -21.29 -0.12 -1.46 16 4 C -0.04 -0.74 9.75 22.51 0.22 -0.52 16 5 C -0.19 -4.65 9.26 22.35 0.21 -4.44 16 6 C 0.19 3.97 6.60 38.33 0.25 4.23 16 7 N -0.56 -11.62 3.13 -627.63 -1.96 -13.59 16 8 C 0.10 1.02 6.49 86.84 0.56 1.58 16 9 C -0.16 -2.34 5.76 31.66 0.18 -2.16 16 10 C 0.06 1.29 3.03 44.91 0.14 1.43 16 11 H 0.14 2.54 8.09 -2.39 -0.02 2.52 16 12 N -0.54 -17.73 4.67 -870.97 -4.07 -21.79 16 13 C 0.07 1.94 5.21 86.32 0.45 2.39 16 14 C -0.11 -4.04 6.09 30.65 0.19 -3.86 16 15 C -0.10 -4.72 5.03 30.67 0.15 -4.57 16 16 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 17 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 18 C -0.54 -30.04 8.56 25.60 0.22 -29.82 16 19 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 20 C 0.01 0.84 5.30 84.66 0.45 1.29 16 21 N -0.91 -53.83 11.36 21.45 0.24 -53.58 16 22 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 C 0.09 3.67 4.00 86.31 0.35 4.01 16 27 C 0.51 14.82 6.00 87.90 0.53 15.35 16 28 O -0.53 -20.52 14.75 -3.02 -0.04 -20.57 16 29 C -0.15 -1.93 9.39 22.35 0.21 -1.72 16 30 C -0.02 -0.31 9.75 22.51 0.22 -0.09 16 31 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.14 4.26 5.23 -2.91 -0.02 4.25 16 33 H 0.11 0.73 7.21 -2.39 -0.02 0.71 16 34 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.49 5.61 -2.39 -0.01 1.47 16 37 H 0.10 2.05 8.08 -2.39 -0.02 2.03 16 38 H 0.05 1.20 7.62 -2.39 -0.02 1.18 16 39 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.05 2.89 6.16 -2.38 -0.01 2.88 16 42 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.04 1.47 6.08 -2.39 -0.01 1.45 16 45 H 0.03 1.32 6.91 -2.39 -0.02 1.30 16 46 H 0.17 0.94 6.72 -2.91 -0.02 0.92 16 47 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -77.53 375.56 3.07 -74.46 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.00 Total: 9.19 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.53 Total: -8.25 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -5.43 Total: -100.92 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.04 Total: -20.57 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -77.53 3.07 -74.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.731 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds