Wall clock time and date at job start Tue Mar 31 2020 22:34:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86793 * 120.00618 * 2 1
4 4 H 1.48505 * 109.47091 * 270.00499 * 3 2 1
5 5 H 1.48500 * 109.47174 * 30.00168 * 3 2 1
6 6 H 1.48503 * 109.47627 * 150.00357 * 3 2 1
7 7 C 1.37887 * 119.99614 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99717 * 186.16868 * 7 2 1
9 9 C 1.50700 * 119.99935 * 6.16747 * 7 2 1
10 10 H 1.09000 * 109.47032 * 181.36988 * 9 7 2
11 11 C 1.52999 * 109.46977 * 301.36984 * 9 7 2
12 12 C 1.50693 * 109.47420 * 294.99610 * 11 9 7
13 13 O 1.21287 * 119.99979 * 0.02562 * 12 11 9
14 14 N 1.34772 * 120.00491 * 180.02562 * 12 11 9
15 15 C 1.46501 * 120.00244 * 180.02562 * 14 12 11
16 16 H 1.08994 * 109.50277 * 34.99504 * 15 14 12
17 17 C 1.53119 * 109.50059 * 155.06778 * 15 14 12
18 18 C 1.53274 * 109.71580 * 189.85303 * 17 15 14
19 19 N 1.46468 * 108.69946 * 309.26583 * 18 17 15
20 20 C 1.34410 * 128.44303 * 197.27454 * 19 18 17
21 21 N 1.30791 * 108.55334 * 179.87097 * 20 19 18
22 22 C 1.34425 * 109.31983 * 0.04609 * 21 20 19
23 23 C 1.33863 * 107.80184 * 0.02562 * 22 21 20
24 24 C 1.50717 * 128.67121 * 179.82258 * 23 22 21
25 25 C 1.50701 * 109.47059 * 61.36982 * 9 7 2
26 26 C 1.38240 * 120.00000 * 91.36681 * 25 9 7
27 27 C 1.38231 * 119.99743 * 179.81014 * 26 25 9
28 28 C 1.38238 * 120.00421 * 0.41927 * 27 26 25
29 29 C 1.38243 * 119.99614 * 359.81507 * 28 27 26
30 30 C 1.38235 * 119.99999 * 359.97438 * 29 28 27
31 31 H 0.97008 * 119.99317 * 359.97438 * 1 2 3
32 32 H 1.09007 * 109.46729 * 174.99953 * 11 9 7
33 33 H 1.09001 * 109.47512 * 55.00427 * 11 9 7
34 34 H 0.97000 * 120.00066 * 359.72650 * 14 12 11
35 35 H 1.08996 * 109.42605 * 309.93093 * 17 15 14
36 36 H 1.08998 * 109.42770 * 69.82786 * 17 15 14
37 37 H 1.09006 * 109.59699 * 69.02515 * 18 17 15
38 38 H 1.08991 * 109.60144 * 189.49762 * 18 17 15
39 39 H 1.07995 * 125.72140 * 359.87375 * 20 19 18
40 40 H 1.08005 * 126.09954 * 179.97438 * 22 21 20
41 41 H 1.08998 * 109.72797 * 76.21147 * 24 23 22
42 42 H 1.09005 * 109.78033 * 315.47903 * 24 23 22
43 43 H 1.07997 * 119.99560 * 359.97438 * 26 25 9
44 44 H 1.08003 * 120.00083 * 180.20738 * 27 26 25
45 45 H 1.07999 * 120.00247 * 179.78811 * 28 27 26
46 46 H 1.07999 * 119.99842 * 179.97438 * 29 28 27
47 47 H 1.08000 * 119.99611 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4469 2.6526 0.7001
6 1 3.5469 1.4400 0.7000
7 6 2.0045 -1.1942 -0.0005
8 1 3.0798 -1.1970 0.1000
9 6 1.2574 -2.4954 -0.1413
10 1 1.9621 -3.3257 -0.0959
11 6 0.2416 -2.6258 0.9953
12 6 0.9698 -2.7246 2.3110
13 8 2.1820 -2.6933 2.3370
14 7 0.2742 -2.8478 3.4587
15 6 0.9821 -2.9433 4.7377
16 1 1.8779 -2.3233 4.7050
17 6 0.0668 -2.4597 5.8659
18 6 0.8722 -2.3238 7.1629
19 7 1.6116 -3.5677 7.3891
20 6 2.1777 -4.0086 8.5257
21 7 2.7352 -5.1681 8.2904
22 6 2.5436 -5.5005 7.0021
23 6 1.8463 -4.5145 6.4244
24 6 1.3795 -4.4032 4.9957
25 6 0.5366 -2.5201 -1.4645
26 6 1.1562 -3.0533 -2.5793
27 6 0.4935 -3.0795 -3.7922
28 6 -0.7855 -2.5648 -3.8923
29 6 -1.4033 -2.0272 -2.7785
30 6 -0.7423 -2.0049 -1.5647
31 1 -0.4849 0.8402 0.0004
32 1 -0.3593 -3.5227 0.8444
33 1 -0.4080 -1.7506 1.0044
34 1 -0.6954 -2.8688 3.4383
35 1 -0.3571 -1.4917 5.5991
36 1 -0.7381 -3.1798 6.0136
37 1 1.5726 -1.4934 7.0730
38 1 0.1942 -2.1445 7.9972
39 1 2.1729 -3.4920 9.4740
40 1 2.8910 -6.4018 6.5190
41 1 0.5178 -5.0518 4.8385
42 1 2.1857 -4.6908 4.3207
43 1 2.1571 -3.4517 -2.5020
44 1 0.9763 -3.4991 -4.6624
45 1 -1.3020 -2.5822 -4.8406
46 1 -2.4024 -1.6247 -2.8568
47 1 -1.2248 -1.5846 -0.6947
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000598948058.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:34:57
Heat of formation + Delta-G solvation = 50.590390 kcal
Electronic energy + Delta-G solvation = -29137.702510 eV
Core-core repulsion = 25286.128502 eV
Total energy + Delta-G solvation = -3851.574007 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.36744 -39.24633 -38.19872 -36.70182 -34.35522 -33.79555 -31.89818 -31.09855
-30.32869 -29.83756 -28.55624 -27.34385 -25.82077 -24.38924 -22.80309 -21.94233
-21.52457 -21.24494 -20.08738 -19.50767 -18.95077 -17.34101 -16.66298 -16.30394
-15.98818 -15.46097 -15.26005 -14.97071 -14.64990 -14.11106 -14.02135 -13.94823
-13.78666 -13.72111 -13.56512 -13.16528 -12.92175 -12.77468 -12.30820 -12.22590
-12.12335 -11.70692 -11.57513 -11.41789 -11.24099 -11.09208 -10.95304 -10.80306
-10.43896 -10.22547 -10.05391 -9.98910 -9.59616 -9.35005 -9.24768 -8.78996
-8.63527 -8.44845 -8.35416 -7.83883 -7.47979 -6.04705 -4.12242 2.01254
2.44914 2.53796 2.67441 3.12792 3.26369 3.33160 3.39311 3.56548
3.63831 4.30752 4.38806 4.41928 4.59013 4.70881 4.77500 4.93104
5.00637 5.06114 5.19515 5.27039 5.34116 5.48787 5.53675 5.77414
5.77806 5.80024 5.88386 5.95765 5.97931 6.17210 6.32301 6.34524
6.42809 6.56484 6.69109 6.70521 6.74404 6.92214 7.10044 7.13200
7.14519 7.24218 7.44871 7.50359 7.66250 7.91804 8.01496 8.03911
8.15103 8.16933 8.31422 8.85659 9.13971 9.51410 10.89888
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.015208 B = 0.002902 C = 0.002663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1840.652449 B = 9646.316448 C =10510.797506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.061 3.939
3 Si 0.890 3.110
4 H -0.281 1.281
5 H -0.288 1.288
6 H -0.275 1.275
7 C -0.469 4.469
8 H 0.060 0.940
9 C 0.088 3.912
10 H 0.037 0.963
11 C -0.140 4.140
12 C 0.527 3.473
13 O -0.525 6.525
14 N -0.745 5.745
15 C 0.146 3.854
16 H 0.089 0.911
17 C -0.142 4.142
18 C 0.108 3.892
19 N -0.458 5.458
20 C 0.177 3.823
21 N -0.498 5.498
22 C -0.028 4.028
23 C -0.010 4.010
24 C -0.057 4.057
25 C -0.032 4.032
26 C -0.131 4.131
27 C -0.142 4.142
28 C -0.153 4.153
29 C -0.144 4.144
30 C -0.076 4.076
31 H 0.261 0.739
32 H 0.051 0.949
33 H 0.137 0.863
34 H 0.395 0.605
35 H 0.096 0.904
36 H 0.078 0.922
37 H 0.088 0.912
38 H 0.094 0.906
39 H 0.203 0.797
40 H 0.168 0.832
41 H 0.082 0.918
42 H 0.094 0.906
43 H 0.106 0.894
44 H 0.101 0.899
45 H 0.099 0.901
46 H 0.101 0.899
47 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.784 -4.767 10.125 12.598
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.139 4.139
3 Si 0.719 3.281
4 H -0.207 1.207
5 H -0.214 1.214
6 H -0.200 1.200
7 C -0.507 4.507
8 H 0.078 0.922
9 C 0.069 3.931
10 H 0.055 0.945
11 C -0.180 4.180
12 C 0.316 3.684
13 O -0.398 6.398
14 N -0.398 5.398
15 C 0.040 3.960
16 H 0.107 0.893
17 C -0.180 4.180
18 C -0.014 4.014
19 N -0.142 5.142
20 C -0.105 4.105
21 N -0.216 5.216
22 C -0.175 4.175
23 C -0.125 4.125
24 C -0.097 4.097
25 C -0.033 4.033
26 C -0.150 4.150
27 C -0.160 4.160
28 C -0.172 4.172
29 C -0.163 4.163
30 C -0.095 4.095
31 H 0.071 0.929
32 H 0.070 0.930
33 H 0.154 0.846
34 H 0.228 0.772
35 H 0.114 0.886
36 H 0.096 0.904
37 H 0.107 0.893
38 H 0.113 0.887
39 H 0.219 0.781
40 H 0.185 0.815
41 H 0.101 0.899
42 H 0.112 0.888
43 H 0.124 0.876
44 H 0.119 0.881
45 H 0.117 0.883
46 H 0.119 0.881
47 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -4.646 -4.916 10.701 12.660
hybrid contribution -0.429 1.736 -0.661 1.906
sum -5.075 -3.180 10.040 11.691
Atomic orbital electron populations
1.69534 1.05697 1.26111 1.51743 1.24856 0.94873 0.98953 0.95175
0.86593 0.80091 0.83344 0.78098 1.20745 1.21423 1.20002 1.21028
0.93792 0.89626 1.46218 0.92175 1.17627 0.91959 0.96999 0.86483
0.94510 1.22012 1.01142 1.03329 0.91485 1.21214 0.88278 0.73539
0.85400 1.90626 1.14403 1.47763 1.87037 1.46215 1.09785 1.78352
1.05495 1.20760 0.96170 0.95578 0.83462 0.89300 1.22152 0.98647
1.03976 0.93263 1.21942 0.95604 0.84739 0.99160 1.45458 1.41755
1.17260 1.09746 1.24733 0.99658 0.94290 0.91813 1.70474 1.22252
1.12328 1.16569 1.21823 1.04174 1.00580 0.90958 1.21203 1.06378
0.92341 0.92575 1.20682 1.02144 0.97784 0.89063 1.20366 0.93150
0.92981 0.96757 1.20932 0.99200 1.01838 0.92988 1.20809 0.95550
1.02634 0.97056 1.20794 0.95971 1.02658 0.97731 1.21090 0.99415
1.01655 0.94104 1.21619 0.94801 0.94961 0.98074 0.92899 0.93045
0.84560 0.77156 0.88584 0.90354 0.89342 0.88737 0.78085 0.81452
0.89941 0.88777 0.87610 0.88051 0.88274 0.88061 0.83409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -21.71 7.74 55.43 0.43 -21.28 16
2 C 0.06 1.54 5.14 -17.82 -0.09 1.45 16
3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16
4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16
6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
7 C -0.47 -12.22 7.27 -34.44 -0.25 -12.47 16
8 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16
9 C 0.09 2.05 1.98 -92.92 -0.18 1.87 16
10 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16
11 C -0.14 -2.81 4.22 -27.89 -0.12 -2.93 16
12 C 0.53 10.25 7.55 -10.99 -0.08 10.16 16
13 O -0.52 -12.26 14.65 5.55 0.08 -12.18 16
14 N -0.74 -10.66 5.08 -53.51 -0.27 -10.93 16
15 C 0.15 1.87 2.47 -67.62 -0.17 1.70 16
16 H 0.09 1.41 7.56 -51.93 -0.39 1.02 16
17 C -0.14 -1.26 5.39 -26.53 -0.14 -1.40 16
18 C 0.11 0.86 7.00 -3.92 -0.03 0.84 16
19 N -0.46 -5.01 3.13 -114.09 -0.36 -5.37 16
20 C 0.18 1.98 12.66 -90.71 -1.15 0.83 16
21 N -0.50 -7.01 11.27 -14.87 -0.17 -7.18 16
22 C -0.03 -0.38 11.84 -17.95 -0.21 -0.60 16
23 C -0.01 -0.13 6.57 -81.72 -0.54 -0.67 16
24 C -0.06 -0.71 5.89 -27.63 -0.16 -0.88 16
25 C -0.03 -0.71 4.68 -104.62 -0.49 -1.20 16
26 C -0.13 -2.74 9.70 -39.58 -0.38 -3.12 16
27 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16
28 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16
29 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16
30 C -0.08 -1.62 7.56 -39.58 -0.30 -1.92 16
31 H 0.26 6.24 8.31 -40.82 -0.34 5.90 16
32 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16
33 H 0.14 2.91 4.65 -51.93 -0.24 2.67 16
34 H 0.39 4.58 8.60 -40.82 -0.35 4.23 16
35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16
36 H 0.08 0.63 8.11 -51.93 -0.42 0.20 16
37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16
40 H 0.17 1.97 8.06 -52.48 -0.42 1.55 16
41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16
42 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16
43 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16
44 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16
45 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16
46 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16
47 H 0.15 3.21 4.97 -52.49 -0.26 2.95 16
LS Contribution 377.90 15.07 5.69 5.69
Total: -1.00 -30.97 377.90 -11.80 -42.77
By element:
Atomic # 1 Polarization: 17.08 SS G_CDS: -6.70 Total: 10.39 kcal
Atomic # 6 Polarization: -12.32 SS G_CDS: -5.49 Total: -17.81 kcal
Atomic # 7 Polarization: -44.39 SS G_CDS: -0.37 Total: -44.76 kcal
Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.18 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -30.97 -11.80 -42.77 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598948058.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.359 kcal
(2) G-P(sol) polarization free energy of solvation -30.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.390 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds