Wall clock time and date at job start Tue Mar 31 2020 22:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00618 * 2 1 4 4 H 1.48505 * 109.47091 * 270.00499 * 3 2 1 5 5 H 1.48500 * 109.47174 * 30.00168 * 3 2 1 6 6 H 1.48503 * 109.47627 * 150.00357 * 3 2 1 7 7 C 1.37887 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99717 * 186.16868 * 7 2 1 9 9 C 1.50700 * 119.99935 * 6.16747 * 7 2 1 10 10 H 1.09000 * 109.47032 * 181.36988 * 9 7 2 11 11 C 1.52999 * 109.46977 * 301.36984 * 9 7 2 12 12 C 1.50693 * 109.47420 * 294.99610 * 11 9 7 13 13 O 1.21287 * 119.99979 * 0.02562 * 12 11 9 14 14 N 1.34772 * 120.00491 * 180.02562 * 12 11 9 15 15 C 1.46501 * 120.00244 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.50277 * 34.99504 * 15 14 12 17 17 C 1.53119 * 109.50059 * 155.06778 * 15 14 12 18 18 C 1.53274 * 109.71580 * 189.85303 * 17 15 14 19 19 N 1.46468 * 108.69946 * 309.26583 * 18 17 15 20 20 C 1.34410 * 128.44303 * 197.27454 * 19 18 17 21 21 N 1.30791 * 108.55334 * 179.87097 * 20 19 18 22 22 C 1.34425 * 109.31983 * 0.04609 * 21 20 19 23 23 C 1.33863 * 107.80184 * 0.02562 * 22 21 20 24 24 C 1.50717 * 128.67121 * 179.82258 * 23 22 21 25 25 C 1.50701 * 109.47059 * 61.36982 * 9 7 2 26 26 C 1.38240 * 120.00000 * 91.36681 * 25 9 7 27 27 C 1.38231 * 119.99743 * 179.81014 * 26 25 9 28 28 C 1.38238 * 120.00421 * 0.41927 * 27 26 25 29 29 C 1.38243 * 119.99614 * 359.81507 * 28 27 26 30 30 C 1.38235 * 119.99999 * 359.97438 * 29 28 27 31 31 H 0.97008 * 119.99317 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.46729 * 174.99953 * 11 9 7 33 33 H 1.09001 * 109.47512 * 55.00427 * 11 9 7 34 34 H 0.97000 * 120.00066 * 359.72650 * 14 12 11 35 35 H 1.08996 * 109.42605 * 309.93093 * 17 15 14 36 36 H 1.08998 * 109.42770 * 69.82786 * 17 15 14 37 37 H 1.09006 * 109.59699 * 69.02515 * 18 17 15 38 38 H 1.08991 * 109.60144 * 189.49762 * 18 17 15 39 39 H 1.07995 * 125.72140 * 359.87375 * 20 19 18 40 40 H 1.08005 * 126.09954 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.72797 * 76.21147 * 24 23 22 42 42 H 1.09005 * 109.78033 * 315.47903 * 24 23 22 43 43 H 1.07997 * 119.99560 * 359.97438 * 26 25 9 44 44 H 1.08003 * 120.00083 * 180.20738 * 27 26 25 45 45 H 1.07999 * 120.00247 * 179.78811 * 28 27 26 46 46 H 1.07999 * 119.99842 * 179.97438 * 29 28 27 47 47 H 1.08000 * 119.99611 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0798 -1.1970 0.1000 9 6 1.2574 -2.4954 -0.1413 10 1 1.9621 -3.3257 -0.0959 11 6 0.2416 -2.6258 0.9953 12 6 0.9698 -2.7246 2.3110 13 8 2.1820 -2.6933 2.3370 14 7 0.2742 -2.8478 3.4587 15 6 0.9821 -2.9433 4.7377 16 1 1.8779 -2.3233 4.7050 17 6 0.0668 -2.4597 5.8659 18 6 0.8722 -2.3238 7.1629 19 7 1.6116 -3.5677 7.3891 20 6 2.1777 -4.0086 8.5257 21 7 2.7352 -5.1681 8.2904 22 6 2.5436 -5.5005 7.0021 23 6 1.8463 -4.5145 6.4244 24 6 1.3795 -4.4032 4.9957 25 6 0.5366 -2.5201 -1.4645 26 6 1.1562 -3.0533 -2.5793 27 6 0.4935 -3.0795 -3.7922 28 6 -0.7855 -2.5648 -3.8923 29 6 -1.4033 -2.0272 -2.7785 30 6 -0.7423 -2.0049 -1.5647 31 1 -0.4849 0.8402 0.0004 32 1 -0.3593 -3.5227 0.8444 33 1 -0.4080 -1.7506 1.0044 34 1 -0.6954 -2.8688 3.4383 35 1 -0.3571 -1.4917 5.5991 36 1 -0.7381 -3.1798 6.0136 37 1 1.5726 -1.4934 7.0730 38 1 0.1942 -2.1445 7.9972 39 1 2.1729 -3.4920 9.4740 40 1 2.8910 -6.4018 6.5190 41 1 0.5178 -5.0518 4.8385 42 1 2.1857 -4.6908 4.3207 43 1 2.1571 -3.4517 -2.5020 44 1 0.9763 -3.4991 -4.6624 45 1 -1.3020 -2.5822 -4.8406 46 1 -2.4024 -1.6247 -2.8568 47 1 -1.2248 -1.5846 -0.6947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598948058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:56 Heat of formation + Delta-G solvation = 34.722256 kcal Electronic energy + Delta-G solvation = -29138.390604 eV Core-core repulsion = 25286.128502 eV Total energy + Delta-G solvation = -3852.262101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.27121 -40.73594 -39.70777 -37.85034 -36.01555 -34.96892 -33.13523 -32.80865 -31.43130 -31.23086 -30.02938 -28.49700 -27.48300 -25.35982 -24.34004 -23.15492 -22.80434 -22.33348 -21.57663 -20.91155 -20.06456 -18.45627 -18.07986 -17.74485 -17.26066 -16.92361 -16.86593 -16.26538 -15.95617 -15.50518 -15.36054 -15.05667 -14.94563 -14.90251 -14.69934 -14.43182 -14.39162 -14.04895 -13.78748 -13.48699 -13.22715 -13.19514 -13.07897 -12.88652 -12.80897 -12.68060 -12.27637 -12.14900 -12.04594 -11.88208 -11.71654 -11.07590 -11.03887 -11.03187 -10.52545 -10.45982 -10.29981 -9.92088 -9.40082 -9.32208 -9.10972 -7.96041 -6.09155 0.87918 0.99289 1.10214 1.35615 1.39426 1.47726 1.88270 2.07229 2.16565 2.37492 2.45491 3.19935 3.36587 3.52843 3.59483 3.77443 3.81913 3.96064 4.15557 4.25966 4.33037 4.38540 4.41846 4.45222 4.47875 4.53286 4.67921 4.72411 4.74415 4.83437 4.85510 4.93293 4.98957 5.07900 5.10423 5.16074 5.38486 5.41695 5.53661 5.63155 5.69196 5.70094 5.74522 5.93643 5.97057 6.11509 6.33521 6.39479 6.42939 6.58381 6.81454 6.88073 7.09341 7.52932 7.66376 8.93984 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015208 B = 0.002902 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.652449 B = 9646.316448 C =10510.797506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.039 3.961 3 Si 0.927 3.073 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.291 1.291 7 C -0.492 4.492 8 H 0.024 0.976 9 C 0.089 3.911 10 H 0.011 0.989 11 C -0.130 4.130 12 C 0.524 3.476 13 O -0.573 6.573 14 N -0.724 5.724 15 C 0.146 3.854 16 H 0.053 0.947 17 C -0.132 4.132 18 C 0.105 3.895 19 N -0.457 5.457 20 C 0.187 3.813 21 N -0.537 5.537 22 C -0.049 4.049 23 C -0.022 4.022 24 C -0.048 4.048 25 C -0.055 4.055 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.149 4.149 29 C -0.148 4.148 30 C -0.088 4.088 31 H 0.263 0.737 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.413 0.587 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.243 0.757 40 H 0.170 0.830 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 -3.919 10.514 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.755 3.245 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.217 1.217 7 C -0.530 4.530 8 H 0.043 0.957 9 C 0.070 3.930 10 H 0.029 0.971 11 C -0.170 4.170 12 C 0.313 3.687 13 O -0.451 6.451 14 N -0.377 5.377 15 C 0.040 3.960 16 H 0.071 0.929 17 C -0.170 4.170 18 C -0.016 4.016 19 N -0.141 5.141 20 C -0.095 4.095 21 N -0.256 5.256 22 C -0.196 4.196 23 C -0.138 4.138 24 C -0.087 4.087 25 C -0.056 4.056 26 C -0.171 4.171 27 C -0.159 4.159 28 C -0.167 4.167 29 C -0.166 4.166 30 C -0.106 4.106 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.148 0.852 34 H 0.249 0.751 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.153 0.847 39 H 0.259 0.741 40 H 0.188 0.812 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.145 0.855 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.633 -4.063 11.107 14.076 hybrid contribution 0.487 1.440 -0.808 1.722 sum -7.146 -2.623 10.298 12.806 Atomic orbital electron populations 1.69606 1.05290 1.26366 1.50845 1.25153 0.95718 0.99999 0.95183 0.86055 0.78895 0.81880 0.77681 1.20976 1.19937 1.21722 1.20947 0.92358 0.91677 1.48028 0.95738 1.17511 0.92221 0.94637 0.88611 0.97061 1.21826 1.00231 1.03920 0.91031 1.21160 0.87672 0.73264 0.86612 1.90611 1.16425 1.50257 1.87807 1.45919 1.10551 1.76364 1.04893 1.20829 0.95894 0.95310 0.83924 0.92852 1.22111 0.98130 1.04969 0.91806 1.22232 0.96036 0.83362 0.99970 1.45647 1.41632 1.17629 1.09158 1.25516 0.97649 0.93398 0.92939 1.70450 1.24069 1.14284 1.16818 1.22034 1.04816 1.01338 0.91406 1.21134 1.06910 0.93000 0.92737 1.20508 1.01667 0.97776 0.88776 1.20354 0.94046 0.94744 0.96464 1.21113 0.99516 1.02585 0.93876 1.21158 0.95874 1.01850 0.97017 1.21222 0.95639 1.00891 0.98908 1.21410 1.00484 1.01149 0.93518 1.21577 0.94526 0.95570 0.98959 0.92655 0.90830 0.85230 0.75092 0.87213 0.88524 0.89055 0.84710 0.74143 0.81249 0.88432 0.91726 0.87964 0.85100 0.84657 0.85481 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.76 7.74 21.45 0.17 -42.60 16 2 C 0.04 2.02 5.14 84.66 0.44 2.45 16 3 Si 0.93 43.34 29.54 68.60 2.03 45.37 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 7 C -0.49 -26.93 7.27 25.60 0.19 -26.74 16 8 H 0.02 1.46 7.82 -2.91 -0.02 1.44 16 9 C 0.09 4.34 1.98 -12.29 -0.02 4.31 16 10 H 0.01 0.57 7.89 -2.39 -0.02 0.55 16 11 C -0.13 -5.35 4.22 29.85 0.13 -5.22 16 12 C 0.52 21.12 7.55 87.66 0.66 21.78 16 13 O -0.57 -28.59 14.65 -3.05 -0.04 -28.63 16 14 N -0.72 -20.58 5.08 -441.59 -2.25 -22.82 16 15 C 0.15 3.72 2.47 45.19 0.11 3.83 16 16 H 0.05 1.77 7.56 -2.39 -0.02 1.75 16 17 C -0.13 -1.99 5.39 30.73 0.17 -1.83 16 18 C 0.11 1.36 7.00 86.48 0.61 1.96 16 19 N -0.46 -9.17 3.13 -514.87 -1.61 -10.78 16 20 C 0.19 3.80 12.66 180.38 2.28 6.08 16 21 N -0.54 -14.89 11.27 -200.96 -2.26 -17.16 16 22 C -0.05 -1.37 11.84 83.30 0.99 -0.38 16 23 C -0.02 -0.56 6.57 40.73 0.27 -0.29 16 24 C -0.05 -1.22 5.89 30.01 0.18 -1.04 16 25 C -0.06 -2.51 4.68 -19.86 -0.09 -2.60 16 26 C -0.15 -6.41 9.70 22.27 0.22 -6.19 16 27 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 28 C -0.15 -4.97 10.05 22.27 0.22 -4.75 16 29 C -0.15 -5.33 10.05 22.27 0.22 -5.10 16 30 C -0.09 -3.67 7.56 22.27 0.17 -3.50 16 31 H 0.26 12.31 8.31 -92.70 -0.77 11.54 16 32 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.13 5.55 4.65 -2.39 -0.01 5.54 16 34 H 0.41 8.89 8.60 -92.71 -0.80 8.10 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 37 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.24 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.17 4.28 8.06 -2.91 -0.02 4.25 16 41 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 46 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 47 H 0.14 6.01 4.97 -2.91 -0.01 5.99 16 Total: -1.00 -71.17 377.90 3.16 -68.01 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.19 Total: 30.64 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 6.94 Total: -22.03 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -5.96 Total: -93.36 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.04 Total: -28.63 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.17 3.16 -68.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598948058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.729 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds