Wall clock time and date at job start Tue Mar 31 2020 22:34:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86793 * 120.00618 * 2 1
4 4 H 1.48505 * 109.47091 * 270.00499 * 3 2 1
5 5 H 1.48500 * 109.47174 * 30.00168 * 3 2 1
6 6 H 1.48503 * 109.47627 * 150.00357 * 3 2 1
7 7 C 1.37887 * 119.99614 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99717 * 186.16868 * 7 2 1
9 9 C 1.50700 * 119.99935 * 6.16747 * 7 2 1
10 10 H 1.09000 * 109.47032 * 181.36988 * 9 7 2
11 11 C 1.52999 * 109.46977 * 301.36984 * 9 7 2
12 12 C 1.50693 * 109.47420 * 294.99610 * 11 9 7
13 13 O 1.21287 * 119.99979 * 0.02562 * 12 11 9
14 14 N 1.34772 * 120.00491 * 180.02562 * 12 11 9
15 15 C 1.46501 * 120.00244 * 180.02562 * 14 12 11
16 16 H 1.08994 * 109.50277 * 34.99504 * 15 14 12
17 17 C 1.53119 * 109.50059 * 155.06778 * 15 14 12
18 18 C 1.53274 * 109.71580 * 189.85303 * 17 15 14
19 19 N 1.46468 * 108.69946 * 309.26583 * 18 17 15
20 20 C 1.34410 * 128.44303 * 197.27454 * 19 18 17
21 21 N 1.30791 * 108.55334 * 179.87097 * 20 19 18
22 22 C 1.34425 * 109.31983 * 0.04609 * 21 20 19
23 23 C 1.33863 * 107.80184 * 0.02562 * 22 21 20
24 24 C 1.50717 * 128.67121 * 179.82258 * 23 22 21
25 25 C 1.50701 * 109.47059 * 61.36982 * 9 7 2
26 26 C 1.38240 * 120.00000 * 91.36681 * 25 9 7
27 27 C 1.38231 * 119.99743 * 179.81014 * 26 25 9
28 28 C 1.38238 * 120.00421 * 0.41927 * 27 26 25
29 29 C 1.38243 * 119.99614 * 359.81507 * 28 27 26
30 30 C 1.38235 * 119.99999 * 359.97438 * 29 28 27
31 31 H 0.97008 * 119.99317 * 359.97438 * 1 2 3
32 32 H 1.09007 * 109.46729 * 174.99953 * 11 9 7
33 33 H 1.09001 * 109.47512 * 55.00427 * 11 9 7
34 34 H 0.97000 * 120.00066 * 359.72650 * 14 12 11
35 35 H 1.08996 * 109.42605 * 309.93093 * 17 15 14
36 36 H 1.08998 * 109.42770 * 69.82786 * 17 15 14
37 37 H 1.09006 * 109.59699 * 69.02515 * 18 17 15
38 38 H 1.08991 * 109.60144 * 189.49762 * 18 17 15
39 39 H 1.07995 * 125.72140 * 359.87375 * 20 19 18
40 40 H 1.08005 * 126.09954 * 179.97438 * 22 21 20
41 41 H 1.08998 * 109.72797 * 76.21147 * 24 23 22
42 42 H 1.09005 * 109.78033 * 315.47903 * 24 23 22
43 43 H 1.07997 * 119.99560 * 359.97438 * 26 25 9
44 44 H 1.08003 * 120.00083 * 180.20738 * 27 26 25
45 45 H 1.07999 * 120.00247 * 179.78811 * 28 27 26
46 46 H 1.07999 * 119.99842 * 179.97438 * 29 28 27
47 47 H 1.08000 * 119.99611 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4469 2.6526 0.7001
6 1 3.5469 1.4400 0.7000
7 6 2.0045 -1.1942 -0.0005
8 1 3.0798 -1.1970 0.1000
9 6 1.2574 -2.4954 -0.1413
10 1 1.9621 -3.3257 -0.0959
11 6 0.2416 -2.6258 0.9953
12 6 0.9698 -2.7246 2.3110
13 8 2.1820 -2.6933 2.3370
14 7 0.2742 -2.8478 3.4587
15 6 0.9821 -2.9433 4.7377
16 1 1.8779 -2.3233 4.7050
17 6 0.0668 -2.4597 5.8659
18 6 0.8722 -2.3238 7.1629
19 7 1.6116 -3.5677 7.3891
20 6 2.1777 -4.0086 8.5257
21 7 2.7352 -5.1681 8.2904
22 6 2.5436 -5.5005 7.0021
23 6 1.8463 -4.5145 6.4244
24 6 1.3795 -4.4032 4.9957
25 6 0.5366 -2.5201 -1.4645
26 6 1.1562 -3.0533 -2.5793
27 6 0.4935 -3.0795 -3.7922
28 6 -0.7855 -2.5648 -3.8923
29 6 -1.4033 -2.0272 -2.7785
30 6 -0.7423 -2.0049 -1.5647
31 1 -0.4849 0.8402 0.0004
32 1 -0.3593 -3.5227 0.8444
33 1 -0.4080 -1.7506 1.0044
34 1 -0.6954 -2.8688 3.4383
35 1 -0.3571 -1.4917 5.5991
36 1 -0.7381 -3.1798 6.0136
37 1 1.5726 -1.4934 7.0730
38 1 0.1942 -2.1445 7.9972
39 1 2.1729 -3.4920 9.4740
40 1 2.8910 -6.4018 6.5190
41 1 0.5178 -5.0518 4.8385
42 1 2.1857 -4.6908 4.3207
43 1 2.1571 -3.4517 -2.5020
44 1 0.9763 -3.4991 -4.6624
45 1 -1.3020 -2.5822 -4.8406
46 1 -2.4024 -1.6247 -2.8568
47 1 -1.2248 -1.5846 -0.6947
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000598948058.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:34:56
Heat of formation + Delta-G solvation = 34.722256 kcal
Electronic energy + Delta-G solvation = -29138.390604 eV
Core-core repulsion = 25286.128502 eV
Total energy + Delta-G solvation = -3852.262101 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.27121 -40.73594 -39.70777 -37.85034 -36.01555 -34.96892 -33.13523 -32.80865
-31.43130 -31.23086 -30.02938 -28.49700 -27.48300 -25.35982 -24.34004 -23.15492
-22.80434 -22.33348 -21.57663 -20.91155 -20.06456 -18.45627 -18.07986 -17.74485
-17.26066 -16.92361 -16.86593 -16.26538 -15.95617 -15.50518 -15.36054 -15.05667
-14.94563 -14.90251 -14.69934 -14.43182 -14.39162 -14.04895 -13.78748 -13.48699
-13.22715 -13.19514 -13.07897 -12.88652 -12.80897 -12.68060 -12.27637 -12.14900
-12.04594 -11.88208 -11.71654 -11.07590 -11.03887 -11.03187 -10.52545 -10.45982
-10.29981 -9.92088 -9.40082 -9.32208 -9.10972 -7.96041 -6.09155 0.87918
0.99289 1.10214 1.35615 1.39426 1.47726 1.88270 2.07229 2.16565
2.37492 2.45491 3.19935 3.36587 3.52843 3.59483 3.77443 3.81913
3.96064 4.15557 4.25966 4.33037 4.38540 4.41846 4.45222 4.47875
4.53286 4.67921 4.72411 4.74415 4.83437 4.85510 4.93293 4.98957
5.07900 5.10423 5.16074 5.38486 5.41695 5.53661 5.63155 5.69196
5.70094 5.74522 5.93643 5.97057 6.11509 6.33521 6.39479 6.42939
6.58381 6.81454 6.88073 7.09341 7.52932 7.66376 8.93984
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.015208 B = 0.002902 C = 0.002663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1840.652449 B = 9646.316448 C =10510.797506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.882 5.882
2 C 0.039 3.961
3 Si 0.927 3.073
4 H -0.283 1.283
5 H -0.274 1.274
6 H -0.291 1.291
7 C -0.492 4.492
8 H 0.024 0.976
9 C 0.089 3.911
10 H 0.011 0.989
11 C -0.130 4.130
12 C 0.524 3.476
13 O -0.573 6.573
14 N -0.724 5.724
15 C 0.146 3.854
16 H 0.053 0.947
17 C -0.132 4.132
18 C 0.105 3.895
19 N -0.457 5.457
20 C 0.187 3.813
21 N -0.537 5.537
22 C -0.049 4.049
23 C -0.022 4.022
24 C -0.048 4.048
25 C -0.055 4.055
26 C -0.153 4.153
27 C -0.141 4.141
28 C -0.149 4.149
29 C -0.148 4.148
30 C -0.088 4.088
31 H 0.263 0.737
32 H 0.073 0.927
33 H 0.130 0.870
34 H 0.413 0.587
35 H 0.110 0.890
36 H 0.096 0.904
37 H 0.091 0.909
38 H 0.135 0.865
39 H 0.243 0.757
40 H 0.170 0.830
41 H 0.097 0.903
42 H 0.064 0.936
43 H 0.102 0.898
44 H 0.131 0.869
45 H 0.136 0.864
46 H 0.127 0.873
47 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.699 -3.919 10.514 14.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.521 5.521
2 C -0.161 4.161
3 Si 0.755 3.245
4 H -0.210 1.210
5 H -0.199 1.199
6 H -0.217 1.217
7 C -0.530 4.530
8 H 0.043 0.957
9 C 0.070 3.930
10 H 0.029 0.971
11 C -0.170 4.170
12 C 0.313 3.687
13 O -0.451 6.451
14 N -0.377 5.377
15 C 0.040 3.960
16 H 0.071 0.929
17 C -0.170 4.170
18 C -0.016 4.016
19 N -0.141 5.141
20 C -0.095 4.095
21 N -0.256 5.256
22 C -0.196 4.196
23 C -0.138 4.138
24 C -0.087 4.087
25 C -0.056 4.056
26 C -0.171 4.171
27 C -0.159 4.159
28 C -0.167 4.167
29 C -0.166 4.166
30 C -0.106 4.106
31 H 0.073 0.927
32 H 0.092 0.908
33 H 0.148 0.852
34 H 0.249 0.751
35 H 0.128 0.872
36 H 0.115 0.885
37 H 0.109 0.891
38 H 0.153 0.847
39 H 0.259 0.741
40 H 0.188 0.812
41 H 0.116 0.884
42 H 0.083 0.917
43 H 0.120 0.880
44 H 0.149 0.851
45 H 0.153 0.847
46 H 0.145 0.855
47 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -7.633 -4.063 11.107 14.076
hybrid contribution 0.487 1.440 -0.808 1.722
sum -7.146 -2.623 10.298 12.806
Atomic orbital electron populations
1.69606 1.05290 1.26366 1.50845 1.25153 0.95718 0.99999 0.95183
0.86055 0.78895 0.81880 0.77681 1.20976 1.19937 1.21722 1.20947
0.92358 0.91677 1.48028 0.95738 1.17511 0.92221 0.94637 0.88611
0.97061 1.21826 1.00231 1.03920 0.91031 1.21160 0.87672 0.73264
0.86612 1.90611 1.16425 1.50257 1.87807 1.45919 1.10551 1.76364
1.04893 1.20829 0.95894 0.95310 0.83924 0.92852 1.22111 0.98130
1.04969 0.91806 1.22232 0.96036 0.83362 0.99970 1.45647 1.41632
1.17629 1.09158 1.25516 0.97649 0.93398 0.92939 1.70450 1.24069
1.14284 1.16818 1.22034 1.04816 1.01338 0.91406 1.21134 1.06910
0.93000 0.92737 1.20508 1.01667 0.97776 0.88776 1.20354 0.94046
0.94744 0.96464 1.21113 0.99516 1.02585 0.93876 1.21158 0.95874
1.01850 0.97017 1.21222 0.95639 1.00891 0.98908 1.21410 1.00484
1.01149 0.93518 1.21577 0.94526 0.95570 0.98959 0.92655 0.90830
0.85230 0.75092 0.87213 0.88524 0.89055 0.84710 0.74143 0.81249
0.88432 0.91726 0.87964 0.85100 0.84657 0.85481 0.84136
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -42.76 7.74 21.45 0.17 -42.60 16
2 C 0.04 2.02 5.14 84.66 0.44 2.45 16
3 Si 0.93 43.34 29.54 68.60 2.03 45.37 16
4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16
5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
6 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16
7 C -0.49 -26.93 7.27 25.60 0.19 -26.74 16
8 H 0.02 1.46 7.82 -2.91 -0.02 1.44 16
9 C 0.09 4.34 1.98 -12.29 -0.02 4.31 16
10 H 0.01 0.57 7.89 -2.39 -0.02 0.55 16
11 C -0.13 -5.35 4.22 29.85 0.13 -5.22 16
12 C 0.52 21.12 7.55 87.66 0.66 21.78 16
13 O -0.57 -28.59 14.65 -3.05 -0.04 -28.63 16
14 N -0.72 -20.58 5.08 -441.59 -2.25 -22.82 16
15 C 0.15 3.72 2.47 45.19 0.11 3.83 16
16 H 0.05 1.77 7.56 -2.39 -0.02 1.75 16
17 C -0.13 -1.99 5.39 30.73 0.17 -1.83 16
18 C 0.11 1.36 7.00 86.48 0.61 1.96 16
19 N -0.46 -9.17 3.13 -514.87 -1.61 -10.78 16
20 C 0.19 3.80 12.66 180.38 2.28 6.08 16
21 N -0.54 -14.89 11.27 -200.96 -2.26 -17.16 16
22 C -0.05 -1.37 11.84 83.30 0.99 -0.38 16
23 C -0.02 -0.56 6.57 40.73 0.27 -0.29 16
24 C -0.05 -1.22 5.89 30.01 0.18 -1.04 16
25 C -0.06 -2.51 4.68 -19.86 -0.09 -2.60 16
26 C -0.15 -6.41 9.70 22.27 0.22 -6.19 16
27 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16
28 C -0.15 -4.97 10.05 22.27 0.22 -4.75 16
29 C -0.15 -5.33 10.05 22.27 0.22 -5.10 16
30 C -0.09 -3.67 7.56 22.27 0.17 -3.50 16
31 H 0.26 12.31 8.31 -92.70 -0.77 11.54 16
32 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16
33 H 0.13 5.55 4.65 -2.39 -0.01 5.54 16
34 H 0.41 8.89 8.60 -92.71 -0.80 8.10 16
35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16
36 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16
37 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16
38 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16
39 H 0.24 2.56 8.06 -2.91 -0.02 2.53 16
40 H 0.17 4.28 8.06 -2.91 -0.02 4.25 16
41 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16
42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16
43 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16
44 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16
45 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16
46 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16
47 H 0.14 6.01 4.97 -2.91 -0.01 5.99 16
Total: -1.00 -71.17 377.90 3.16 -68.01
By element:
Atomic # 1 Polarization: 30.45 SS G_CDS: 0.19 Total: 30.64 kcal
Atomic # 6 Polarization: -28.97 SS G_CDS: 6.94 Total: -22.03 kcal
Atomic # 7 Polarization: -87.40 SS G_CDS: -5.96 Total: -93.36 kcal
Atomic # 8 Polarization: -28.59 SS G_CDS: -0.04 Total: -28.63 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal
Total: -71.17 3.16 -68.01 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598948058.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.729 kcal
(2) G-P(sol) polarization free energy of solvation -71.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.007 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.722 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds