Wall clock time and date at job start Tue Mar 31 2020 22:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99992 * 2 1 4 4 H 1.48502 * 109.46707 * 270.00330 * 3 2 1 5 5 H 1.48496 * 109.47000 * 30.00244 * 3 2 1 6 6 H 1.48493 * 109.46890 * 150.00208 * 3 2 1 7 7 C 1.37873 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99989 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00230 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47319 * 185.68330 * 9 7 2 11 11 C 1.46902 * 110.99942 * 299.80196 * 10 9 7 12 12 C 1.53237 * 109.34090 * 187.25514 * 11 10 9 13 13 N 1.47078 * 108.51876 * 306.16888 * 12 11 10 14 14 C 1.34782 * 120.87945 * 231.16016 * 13 12 11 15 15 O 1.21640 * 119.99843 * 177.12060 * 14 13 12 16 16 C 1.47132 * 119.99995 * 357.12733 * 14 13 12 17 17 C 1.36622 * 126.97315 * 330.41284 * 16 14 13 18 18 N 1.34709 * 108.68219 * 179.83546 * 17 16 14 19 19 H 0.96993 * 124.72582 * 180.20529 * 18 17 16 20 20 C 1.36218 * 110.54660 * 0.45203 * 18 17 16 21 21 C 1.35749 * 108.68025 * 359.72321 * 20 18 17 22 22 C 1.48284 * 126.98519 * 180.02562 * 21 20 18 23 23 C 1.39391 * 120.12847 * 129.72188 * 22 21 20 24 24 C 1.38003 * 119.86830 * 179.72352 * 23 22 21 25 25 C 1.38323 * 120.13018 * 0.53627 * 24 23 22 26 26 C 1.38338 * 120.25604 * 359.76430 * 25 24 23 27 27 C 1.38000 * 120.12385 * 359.95544 * 26 25 24 28 28 C 1.47077 * 118.24175 * 51.18549 * 13 12 11 29 29 C 1.46895 * 111.00043 * 64.10202 * 10 9 7 30 30 H 0.97004 * 119.99781 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.46739 * 65.68036 * 9 7 2 32 32 H 1.09003 * 109.46660 * 305.68444 * 9 7 2 33 33 H 1.09001 * 109.49418 * 67.28942 * 11 10 9 34 34 H 1.09007 * 109.49326 * 307.21652 * 11 10 9 35 35 H 1.09004 * 109.63003 * 186.45967 * 12 11 10 36 36 H 1.08995 * 109.63034 * 65.88057 * 12 11 10 37 37 H 1.07995 * 125.65504 * 359.97438 * 17 16 14 38 38 H 1.08004 * 125.66231 * 179.69031 * 20 18 17 39 39 H 1.07999 * 120.06267 * 0.02562 * 23 22 21 40 40 H 1.08005 * 119.92904 * 180.25619 * 24 23 22 41 41 H 1.07999 * 119.87520 * 179.74573 * 25 24 23 42 42 H 1.08001 * 119.93780 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.06516 * 180.02562 * 27 26 25 44 44 H 1.09006 * 109.62473 * 68.51990 * 28 13 12 45 45 H 1.08996 * 109.63277 * 189.10231 * 28 13 12 46 46 H 1.08994 * 109.49934 * 52.78895 * 29 10 9 47 47 H 1.09005 * 109.49520 * 292.70415 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5723 -0.1365 11 6 3.5344 -3.4094 0.9769 12 6 4.2095 -4.7827 0.8970 13 7 3.9740 -5.3418 -0.4428 14 6 3.4823 -6.5874 -0.5959 15 8 3.2443 -7.0147 -1.7096 16 6 3.2332 -7.4302 0.5842 17 6 3.9029 -7.3959 1.7745 18 7 3.3708 -8.3216 2.5958 19 1 3.6696 -8.4930 3.5025 20 6 2.3581 -8.9871 1.9737 21 6 2.2149 -8.4871 0.7198 22 6 1.2332 -8.9165 -0.3052 23 6 0.4464 -7.9705 -0.9601 24 6 -0.4616 -8.3756 -1.9172 25 6 -0.5995 -9.7184 -2.2192 26 6 0.1743 -10.6623 -1.5681 27 6 1.0895 -10.2684 -0.6133 28 6 4.2896 -4.5061 -1.6111 29 6 3.6114 -3.1436 -1.4324 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.7702 0.9360 32 1 3.8745 -0.5952 -0.8353 33 1 2.4531 -3.5312 0.9119 34 1 3.7908 -2.9324 1.9229 35 1 3.7828 -5.4449 1.6504 36 1 5.2810 -4.6743 1.0654 37 1 4.7215 -6.7347 2.0175 38 1 1.7674 -9.7813 2.4060 39 1 0.5506 -6.9221 -0.7224 40 1 -1.0688 -7.6430 -2.4282 41 1 -1.3142 -10.0312 -2.9660 42 1 0.0621 -11.7094 -1.8076 43 1 1.6934 -11.0061 -0.1058 44 1 5.3689 -4.3710 -1.6838 45 1 3.9160 -4.9853 -2.5159 46 1 3.9236 -2.4740 -2.2338 47 1 2.5290 -3.2692 -1.4639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602206367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:19 Heat of formation + Delta-G solvation = 62.321168 kcal Electronic energy + Delta-G solvation = -29396.560075 eV Core-core repulsion = 25545.494752 eV Total energy + Delta-G solvation = -3851.065323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41478 -39.34470 -38.68464 -37.30880 -34.41620 -32.53599 -32.32838 -31.29012 -30.74320 -29.80447 -28.52190 -28.29534 -25.65217 -23.36009 -23.03453 -22.87070 -22.28691 -21.39453 -20.23182 -19.59483 -18.99418 -17.76376 -16.77549 -16.48073 -16.36181 -15.40301 -15.21422 -15.01315 -14.62604 -14.54143 -14.46575 -14.16025 -14.04876 -13.75483 -13.45714 -13.27132 -13.18213 -13.00697 -12.76983 -12.43643 -12.26750 -12.11630 -12.04841 -11.30009 -11.20787 -11.07315 -10.97604 -10.93050 -10.59730 -10.38514 -10.26919 -10.05779 -9.62827 -9.52169 -9.25254 -8.76489 -8.63114 -8.55020 -8.27225 -8.03311 -7.28278 -6.13649 -4.14418 1.29954 1.58750 1.79854 2.40839 3.01052 3.24780 3.29035 3.32849 3.35644 3.64077 3.99831 4.36020 4.68402 4.81173 4.84836 4.89657 5.04476 5.08664 5.15374 5.19368 5.26972 5.35455 5.49285 5.54754 5.60829 5.61284 5.67945 5.75538 5.84384 5.91644 6.05269 6.12366 6.13518 6.19791 6.37432 6.41959 6.58640 6.63051 6.65302 6.75432 6.77001 6.80538 6.83781 6.92976 7.02096 7.14812 7.25686 7.49143 7.75762 7.97370 7.99610 8.40216 8.57822 8.88674 9.48594 10.99188 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.003157 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.572708 B = 8868.081607 C = 9755.271964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.156 3.844 10 N -0.534 5.534 11 C 0.048 3.952 12 C 0.096 3.904 13 N -0.604 5.604 14 C 0.584 3.416 15 O -0.540 6.540 16 C -0.201 4.201 17 C 0.035 3.965 18 N -0.548 5.548 19 H 0.419 0.581 20 C -0.004 4.004 21 C -0.082 4.082 22 C -0.002 4.002 23 C -0.083 4.083 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.113 4.113 28 C 0.119 3.881 29 C 0.048 3.952 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.513 -19.908 5.162 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.092 0.908 9 C 0.029 3.971 10 N -0.257 5.257 11 C -0.082 4.082 12 C -0.027 4.027 13 N -0.338 5.338 14 C 0.374 3.626 15 O -0.418 6.418 16 C -0.211 4.211 17 C -0.100 4.100 18 N -0.142 5.142 19 H 0.255 0.745 20 C -0.133 4.133 21 C -0.089 4.089 22 C -0.003 4.003 23 C -0.101 4.101 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.131 4.131 28 C -0.004 4.004 29 C -0.081 4.081 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.198 0.802 38 H 0.189 0.811 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.095 0.905 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.780 -20.024 4.710 21.659 hybrid contribution -0.448 1.130 0.435 1.291 sum 6.332 -18.894 5.145 20.580 Atomic orbital electron populations 1.69932 1.06392 1.27026 1.50151 1.24980 0.94690 0.99223 0.94122 0.86791 0.80343 0.83568 0.78648 1.20174 1.21330 1.18879 1.21684 0.90631 0.94692 1.52220 0.90793 1.20173 0.94666 0.85437 0.96831 1.62424 1.58527 1.03759 1.01034 1.22263 0.98641 0.91675 0.95577 1.22399 1.00481 0.95721 0.84122 1.47986 1.64110 1.13830 1.07825 1.17388 0.76629 0.80663 0.87952 1.90771 1.52310 1.72931 1.25827 1.20408 1.02957 1.02820 0.94895 1.22196 1.01607 0.95770 0.90416 1.41429 1.28225 1.29672 1.14891 0.74468 1.21768 0.95843 1.01957 0.93695 1.19067 0.98202 0.98098 0.93540 1.18003 0.94197 0.92775 0.95307 1.21156 0.94509 0.99210 0.95235 1.21084 0.98778 0.95968 0.97687 1.21118 0.99887 0.93267 1.00074 1.20962 0.96972 0.99160 0.97279 1.21081 0.98799 0.94702 0.98532 1.21775 0.99652 0.90462 0.88494 1.22271 0.99090 0.93735 0.92980 0.92651 0.95356 0.95586 0.93257 0.90544 0.89042 0.91332 0.80183 0.81105 0.86428 0.86115 0.86479 0.86412 0.86444 0.91556 0.89334 0.90513 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.07 27.36 -169.99 -4.65 16.41 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.05 6.71 56.52 0.38 -5.67 16 7 C -0.55 -15.12 8.31 -34.44 -0.29 -15.41 16 8 H 0.07 2.23 6.13 -52.49 -0.32 1.91 16 9 C 0.16 3.61 4.18 -4.98 -0.02 3.59 16 10 N -0.53 -10.60 4.83 -235.76 -1.14 -11.74 16 11 C 0.05 0.86 5.17 -3.70 -0.02 0.84 16 12 C 0.10 1.34 5.40 -3.60 -0.02 1.32 16 13 N -0.60 -9.77 3.01 -173.84 -0.52 -10.30 16 14 C 0.58 10.07 7.45 -12.65 -0.09 9.98 16 15 O -0.54 -11.01 15.34 5.24 0.08 -10.93 16 16 C -0.20 -2.87 5.77 -103.15 -0.59 -3.46 16 17 C 0.03 0.35 9.51 -16.87 -0.16 0.19 16 18 N -0.55 -4.19 5.88 -12.63 -0.07 -4.27 16 19 H 0.42 1.56 8.96 -40.82 -0.37 1.19 16 20 C 0.00 -0.03 11.80 -16.49 -0.19 -0.23 16 21 C -0.08 -1.11 5.78 -102.93 -0.59 -1.71 16 22 C 0.00 -0.03 5.36 -104.90 -0.56 -0.59 16 23 C -0.08 -1.31 8.81 -39.24 -0.35 -1.66 16 24 C -0.12 -1.65 10.03 -39.64 -0.40 -2.05 16 25 C -0.13 -1.53 10.04 -39.51 -0.40 -1.93 16 26 C -0.13 -1.45 10.03 -39.63 -0.40 -1.85 16 27 C -0.11 -1.40 9.72 -39.24 -0.38 -1.78 16 28 C 0.12 1.98 6.61 -3.60 -0.02 1.95 16 29 C 0.05 0.93 5.23 -3.70 -0.02 0.91 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.03 0.66 7.59 -51.93 -0.39 0.27 16 32 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 33 H 0.05 1.05 6.64 -51.93 -0.34 0.70 16 34 H 0.08 1.30 8.11 -51.92 -0.42 0.88 16 35 H 0.09 1.08 4.12 -51.93 -0.21 0.87 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.18 1.37 6.24 -52.49 -0.33 1.04 16 38 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 39 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 40 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.53 7.05 -51.93 -0.37 1.16 16 46 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 47 H 0.05 1.10 7.08 -51.93 -0.37 0.73 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -35.11 376.07 -10.93 -46.04 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.45 Total: 5.39 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -4.61 Total: -9.92 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.96 Total: -52.65 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.65 Total: 16.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.11 -10.93 -46.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.357 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds