Wall clock time and date at job start Tue Mar 31 2020 22:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99992 * 2 1 4 4 H 1.48502 * 109.46707 * 270.00330 * 3 2 1 5 5 H 1.48496 * 109.47000 * 30.00244 * 3 2 1 6 6 H 1.48493 * 109.46890 * 150.00208 * 3 2 1 7 7 C 1.37873 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99989 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00230 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47319 * 185.68330 * 9 7 2 11 11 C 1.46902 * 110.99942 * 299.80196 * 10 9 7 12 12 C 1.53237 * 109.34090 * 187.25514 * 11 10 9 13 13 N 1.47078 * 108.51876 * 306.16888 * 12 11 10 14 14 C 1.34782 * 120.87945 * 231.16016 * 13 12 11 15 15 O 1.21640 * 119.99843 * 177.12060 * 14 13 12 16 16 C 1.47132 * 119.99995 * 357.12733 * 14 13 12 17 17 C 1.36622 * 126.97315 * 330.41284 * 16 14 13 18 18 N 1.34709 * 108.68219 * 179.83546 * 17 16 14 19 19 H 0.96993 * 124.72582 * 180.20529 * 18 17 16 20 20 C 1.36218 * 110.54660 * 0.45203 * 18 17 16 21 21 C 1.35749 * 108.68025 * 359.72321 * 20 18 17 22 22 C 1.48284 * 126.98519 * 180.02562 * 21 20 18 23 23 C 1.39391 * 120.12847 * 129.72188 * 22 21 20 24 24 C 1.38003 * 119.86830 * 179.72352 * 23 22 21 25 25 C 1.38323 * 120.13018 * 0.53627 * 24 23 22 26 26 C 1.38338 * 120.25604 * 359.76430 * 25 24 23 27 27 C 1.38000 * 120.12385 * 359.95544 * 26 25 24 28 28 C 1.47077 * 118.24175 * 51.18549 * 13 12 11 29 29 C 1.46895 * 111.00043 * 64.10202 * 10 9 7 30 30 H 0.97004 * 119.99781 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.46739 * 65.68036 * 9 7 2 32 32 H 1.09003 * 109.46660 * 305.68444 * 9 7 2 33 33 H 1.09001 * 109.49418 * 67.28942 * 11 10 9 34 34 H 1.09007 * 109.49326 * 307.21652 * 11 10 9 35 35 H 1.09004 * 109.63003 * 186.45967 * 12 11 10 36 36 H 1.08995 * 109.63034 * 65.88057 * 12 11 10 37 37 H 1.07995 * 125.65504 * 359.97438 * 17 16 14 38 38 H 1.08004 * 125.66231 * 179.69031 * 20 18 17 39 39 H 1.07999 * 120.06267 * 0.02562 * 23 22 21 40 40 H 1.08005 * 119.92904 * 180.25619 * 24 23 22 41 41 H 1.07999 * 119.87520 * 179.74573 * 25 24 23 42 42 H 1.08001 * 119.93780 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.06516 * 180.02562 * 27 26 25 44 44 H 1.09006 * 109.62473 * 68.51990 * 28 13 12 45 45 H 1.08996 * 109.63277 * 189.10231 * 28 13 12 46 46 H 1.08994 * 109.49934 * 52.78895 * 29 10 9 47 47 H 1.09005 * 109.49520 * 292.70415 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5723 -0.1365 11 6 3.5344 -3.4094 0.9769 12 6 4.2095 -4.7827 0.8970 13 7 3.9740 -5.3418 -0.4428 14 6 3.4823 -6.5874 -0.5959 15 8 3.2443 -7.0147 -1.7096 16 6 3.2332 -7.4302 0.5842 17 6 3.9029 -7.3959 1.7745 18 7 3.3708 -8.3216 2.5958 19 1 3.6696 -8.4930 3.5025 20 6 2.3581 -8.9871 1.9737 21 6 2.2149 -8.4871 0.7198 22 6 1.2332 -8.9165 -0.3052 23 6 0.4464 -7.9705 -0.9601 24 6 -0.4616 -8.3756 -1.9172 25 6 -0.5995 -9.7184 -2.2192 26 6 0.1743 -10.6623 -1.5681 27 6 1.0895 -10.2684 -0.6133 28 6 4.2896 -4.5061 -1.6111 29 6 3.6114 -3.1436 -1.4324 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.7702 0.9360 32 1 3.8745 -0.5952 -0.8353 33 1 2.4531 -3.5312 0.9119 34 1 3.7908 -2.9324 1.9229 35 1 3.7828 -5.4449 1.6504 36 1 5.2810 -4.6743 1.0654 37 1 4.7215 -6.7347 2.0175 38 1 1.7674 -9.7813 2.4060 39 1 0.5506 -6.9221 -0.7224 40 1 -1.0688 -7.6430 -2.4282 41 1 -1.3142 -10.0312 -2.9660 42 1 0.0621 -11.7094 -1.8076 43 1 1.6934 -11.0061 -0.1058 44 1 5.3689 -4.3710 -1.6838 45 1 3.9160 -4.9853 -2.5159 46 1 3.9236 -2.4740 -2.2338 47 1 2.5290 -3.2692 -1.4639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602206367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:18 Heat of formation + Delta-G solvation = 37.748121 kcal Electronic energy + Delta-G solvation = -29397.625642 eV Core-core repulsion = 25545.494752 eV Total energy + Delta-G solvation = -3852.130890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.30374 -40.65150 -39.66461 -38.82940 -35.99759 -34.37270 -33.45084 -32.60169 -31.77374 -31.01658 -30.10496 -29.26963 -27.33600 -24.73966 -24.46760 -23.82685 -23.40566 -22.90436 -21.41565 -20.80718 -20.01211 -19.19620 -18.50481 -17.63641 -17.42693 -16.66294 -16.50523 -16.39029 -16.04721 -15.97389 -15.81929 -15.68668 -14.97249 -14.84097 -14.73169 -14.58309 -14.39761 -14.26746 -14.00097 -13.83997 -13.69902 -13.64155 -13.11846 -12.95593 -12.91813 -12.48477 -12.20868 -12.16016 -12.04385 -11.95529 -11.90024 -11.81167 -11.63599 -10.91299 -10.81220 -10.22182 -9.81064 -9.71706 -9.40612 -9.04927 -8.92904 -8.33565 -6.40252 0.30906 0.54658 0.85347 1.35832 1.36571 1.49198 1.50420 1.98197 2.32432 2.36679 2.49408 2.97614 3.01927 3.24948 3.71422 3.91410 3.99675 4.05360 4.11317 4.12002 4.17054 4.27422 4.30627 4.34546 4.46290 4.50186 4.58472 4.64344 4.69326 4.70628 4.74378 4.83781 4.95693 5.01818 5.04981 5.07303 5.15471 5.17684 5.19281 5.45000 5.46133 5.56419 5.63705 5.64963 5.79668 5.91986 6.01805 6.16224 6.26905 6.30231 6.53285 6.67254 6.68552 7.27075 7.29588 8.83235 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.003157 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.572708 B = 8868.081607 C = 9755.271964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.553 4.553 8 H 0.024 0.976 9 C 0.161 3.839 10 N -0.520 5.520 11 C 0.047 3.953 12 C 0.106 3.894 13 N -0.610 5.610 14 C 0.578 3.422 15 O -0.587 6.587 16 C -0.251 4.251 17 C 0.060 3.940 18 N -0.525 5.525 19 H 0.443 0.557 20 C 0.023 3.977 21 C -0.127 4.127 22 C -0.013 4.013 23 C -0.118 4.118 24 C -0.137 4.137 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.116 4.116 28 C 0.128 3.872 29 C 0.055 3.945 30 H 0.266 0.734 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.000 1.000 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.212 0.788 38 H 0.207 0.793 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.083 0.917 47 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 -21.534 7.553 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.591 4.591 8 H 0.042 0.958 9 C 0.034 3.966 10 N -0.243 5.243 11 C -0.082 4.082 12 C -0.016 4.016 13 N -0.342 5.342 14 C 0.370 3.630 15 O -0.468 6.468 16 C -0.261 4.261 17 C -0.077 4.077 18 N -0.120 5.120 19 H 0.285 0.715 20 C -0.107 4.107 21 C -0.133 4.133 22 C -0.014 4.014 23 C -0.136 4.136 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.138 4.138 27 C -0.134 4.134 28 C 0.005 3.995 29 C -0.075 4.075 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.229 0.771 38 H 0.224 0.776 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.161 0.839 42 H 0.172 0.828 43 H 0.164 0.836 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 10.007 -21.673 7.159 24.922 hybrid contribution -1.531 1.528 -0.281 2.181 sum 8.477 -20.144 6.878 22.912 Atomic orbital electron populations 1.70109 1.08638 1.28225 1.52111 1.26020 0.95538 1.03766 0.93687 0.85594 0.79669 0.77756 0.79180 1.19427 1.21155 1.16079 1.21908 0.93061 0.92837 1.51338 0.95792 1.20078 0.91411 0.87709 0.97433 1.62483 1.57374 1.02753 1.01670 1.22362 0.96225 0.94093 0.95552 1.22539 1.02257 0.93201 0.83599 1.48111 1.63985 1.13691 1.08438 1.17956 0.75490 0.81014 0.88537 1.90722 1.54170 1.74036 1.27904 1.20359 1.05758 1.04317 0.95618 1.22461 1.00888 0.95448 0.88854 1.41449 1.26881 1.28070 1.15586 0.71539 1.22174 0.95166 1.01326 0.92082 1.19307 0.99084 0.99627 0.95332 1.18269 0.94014 0.93499 0.95594 1.21036 0.97021 0.97876 0.97682 1.21231 0.98971 0.97482 0.97853 1.21429 1.00546 0.92236 1.00611 1.21430 0.95597 1.00732 0.96007 1.21440 0.99104 0.94160 0.98705 1.21620 1.00680 0.88569 0.88648 1.22219 0.96277 0.95739 0.93231 0.92550 0.94154 0.94970 0.98123 0.88885 0.86656 0.87580 0.77126 0.77644 0.90385 0.86429 0.83866 0.82794 0.83619 0.88648 0.90773 0.89908 0.98375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 2 C 0.01 0.44 5.47 84.65 0.46 0.91 16 3 Si 0.96 43.54 27.36 68.60 1.88 45.42 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.24 -9.77 6.71 99.48 0.67 -9.10 16 7 C -0.55 -31.64 8.31 25.60 0.21 -31.43 16 8 H 0.02 1.58 6.13 -2.91 -0.02 1.56 16 9 C 0.16 7.45 4.18 85.56 0.36 7.80 16 10 N -0.52 -20.68 4.83 -899.82 -4.35 -25.02 16 11 C 0.05 1.69 5.17 86.38 0.45 2.14 16 12 C 0.11 2.78 5.40 86.35 0.47 3.25 16 13 N -0.61 -20.08 3.01 -822.14 -2.47 -22.56 16 14 C 0.58 20.88 7.45 86.58 0.64 21.53 16 15 O -0.59 -25.84 15.34 -4.16 -0.06 -25.90 16 16 C -0.25 -7.12 5.77 -18.91 -0.11 -7.23 16 17 C 0.06 1.03 9.51 83.87 0.80 1.82 16 18 N -0.52 -5.90 5.88 -193.89 -1.14 -7.04 16 19 H 0.44 0.99 8.96 -92.71 -0.83 0.16 16 20 C 0.02 0.37 11.80 83.43 0.98 1.35 16 21 C -0.13 -3.42 5.78 -18.77 -0.11 -3.52 16 22 C -0.01 -0.40 5.36 -20.05 -0.11 -0.50 16 23 C -0.12 -4.18 8.81 22.49 0.20 -3.98 16 24 C -0.14 -4.27 10.03 22.23 0.22 -4.05 16 25 C -0.13 -3.20 10.04 22.31 0.22 -2.97 16 26 C -0.12 -2.58 10.03 22.24 0.22 -2.36 16 27 C -0.12 -2.75 9.72 22.49 0.22 -2.53 16 28 C 0.13 4.38 6.61 86.35 0.57 4.95 16 29 C 0.05 2.22 5.23 86.39 0.45 2.67 16 30 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.04 1.79 7.59 -2.39 -0.02 1.78 16 32 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 33 H 0.00 0.02 6.64 -2.39 -0.02 0.00 16 34 H 0.09 3.03 8.11 -2.38 -0.02 3.01 16 35 H 0.12 2.47 4.12 -2.39 -0.01 2.46 16 36 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.21 2.19 6.24 -2.91 -0.02 2.17 16 38 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.08 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 41 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 42 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 45 H 0.07 2.76 7.05 -2.39 -0.02 2.74 16 46 H 0.08 3.19 8.06 -2.39 -0.02 3.17 16 47 H 0.00 -0.11 7.08 -2.38 -0.02 -0.13 16 Total: -1.00 -86.34 376.07 0.44 -85.90 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.13 Total: 21.37 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 6.16 Total: -12.16 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -7.66 Total: -114.63 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -86.34 0.44 -85.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.645 kcal (2) G-P(sol) polarization free energy of solvation -86.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds