Wall clock time and date at job start Tue Mar 31 2020 22:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99725 * 2 1 4 4 H 1.48499 * 109.47050 * 269.99826 * 3 2 1 5 5 H 1.48506 * 109.47040 * 29.99720 * 3 2 1 6 6 H 1.48497 * 109.47038 * 149.99846 * 3 2 1 7 7 C 1.37874 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99667 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99985 * 170.00003 * 10 9 7 12 12 C 1.53234 * 109.34356 * 187.25587 * 11 10 9 13 13 N 1.47085 * 108.51948 * 306.17712 * 12 11 10 14 14 C 1.34780 * 120.87525 * 231.18246 * 13 12 11 15 15 O 1.21547 * 120.00355 * 5.94488 * 14 13 12 16 16 C 1.47868 * 119.99714 * 185.94167 * 14 13 12 17 17 C 1.39621 * 120.11038 * 33.34709 * 16 14 13 18 18 C 1.37974 * 119.98518 * 179.97438 * 17 16 14 19 19 C 1.38268 * 120.21535 * 0.02562 * 18 17 16 20 20 C 1.38904 * 120.22659 * 359.74769 * 19 18 17 21 21 N 1.40232 * 119.99314 * 180.25429 * 20 19 18 22 22 C 1.36574 * 125.66602 * 179.97438 * 21 20 19 23 23 C 1.34846 * 108.19396 * 179.83111 * 22 21 20 24 24 C 1.40938 * 107.47358 * 0.42602 * 23 22 21 25 25 C 1.34851 * 107.46368 * 359.73415 * 24 23 22 26 26 C 1.38593 * 120.01208 * 0.50288 * 20 19 18 27 27 C 1.47080 * 118.24195 * 51.45331 * 13 12 11 28 28 C 1.46901 * 111.00377 * 294.30955 * 10 9 7 29 29 H 0.97001 * 119.99968 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46623 * 60.00700 * 9 7 2 31 31 H 1.08997 * 109.47361 * 300.00504 * 9 7 2 32 32 H 1.09007 * 109.48839 * 67.30000 * 11 10 9 33 33 H 1.08992 * 109.49401 * 307.22036 * 11 10 9 34 34 H 1.08997 * 109.63231 * 186.46382 * 12 11 10 35 35 H 1.08998 * 109.62704 * 65.88212 * 12 11 10 36 36 H 1.08002 * 120.00373 * 359.95551 * 17 16 14 37 37 H 1.07992 * 119.89370 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.88468 * 180.02562 * 19 18 17 39 39 H 1.07992 * 125.89748 * 359.97438 * 22 21 20 40 40 H 1.08004 * 126.26474 * 180.15742 * 23 22 21 41 41 H 1.08001 * 126.27012 * 179.75601 * 24 23 22 42 42 H 1.07998 * 125.89745 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.10344 * 179.77349 * 26 20 19 44 44 H 1.09000 * 109.62452 * 68.24807 * 27 13 12 45 45 H 1.08992 * 109.63188 * 188.82950 * 27 13 12 46 46 H 1.09003 * 109.48883 * 292.70619 * 28 10 9 47 47 H 1.08996 * 109.49105 * 52.78313 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0015 11 6 1.5216 -4.8933 0.2407 12 6 2.5642 -6.0029 0.4133 13 7 3.4613 -5.9864 -0.7522 14 6 3.7112 -7.1129 -1.4488 15 8 3.1111 -8.1364 -1.1848 16 6 4.7153 -7.1035 -2.5341 17 6 5.8434 -6.2865 -2.4377 18 6 6.7790 -6.2802 -3.4517 19 6 6.6036 -7.0808 -4.5653 20 6 5.4870 -7.9005 -4.6683 21 7 5.3167 -8.7145 -5.7975 22 6 4.2681 -9.5614 -6.0178 23 6 4.4573 -10.1648 -7.2088 24 6 5.6701 -9.6817 -7.7400 25 6 6.1746 -8.7963 -6.8568 26 6 4.5386 -7.9104 -3.6577 27 6 4.0832 -4.7093 -1.1338 28 6 2.9761 -3.6495 -1.2489 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5574 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 0.8794 -5.1266 -0.6087 33 1 0.9170 -4.8185 1.1445 34 1 2.0638 -6.9691 0.4764 35 1 3.1405 -5.8258 1.3213 36 1 5.9834 -5.6593 -1.5696 37 1 7.6512 -5.6480 -3.3754 38 1 7.3395 -7.0720 -5.3557 39 1 3.4310 -9.7187 -5.3540 40 1 3.8018 -10.8892 -7.6692 41 1 6.1139 -9.9678 -8.6821 42 1 7.0975 -8.2466 -6.9682 43 1 3.6681 -8.5445 -3.7380 44 1 4.8026 -4.4102 -0.3714 45 1 4.5874 -4.8199 -2.0937 46 1 2.3136 -3.9000 -2.0775 47 1 3.4263 -2.6727 -1.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:37 Heat of formation + Delta-G solvation = 74.431431 kcal Electronic energy + Delta-G solvation = -28578.652657 eV Core-core repulsion = 24728.112475 eV Total energy + Delta-G solvation = -3850.540182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92739 -40.53872 -38.65957 -37.50359 -34.67896 -33.55739 -32.48169 -31.84331 -30.82794 -29.19368 -29.08867 -28.28100 -25.84882 -24.07766 -23.85561 -22.98499 -22.10366 -21.12800 -20.35625 -20.14183 -19.42121 -18.31978 -16.94795 -16.45826 -16.41246 -16.03749 -15.59681 -15.23707 -15.03160 -14.74484 -14.59424 -14.48590 -14.14369 -13.95497 -13.73827 -13.66017 -13.55490 -13.12082 -12.72096 -12.61113 -12.53784 -12.30540 -11.99222 -11.94150 -11.75240 -11.36056 -11.16586 -10.99844 -10.81554 -10.68070 -10.60163 -10.17770 -9.99249 -9.80490 -9.43721 -9.32465 -8.60629 -8.53855 -8.50324 -8.30970 -7.40010 -6.10704 -4.13151 0.41742 0.70258 2.06028 2.44914 2.71342 2.72660 2.96308 3.25645 3.32667 3.35736 3.46646 4.15909 4.32489 4.34411 4.51018 4.66060 4.71568 4.76223 4.77404 4.89441 5.09553 5.20025 5.20704 5.25173 5.31459 5.33338 5.45041 5.46883 5.56099 5.62404 5.66314 5.78343 5.86174 5.90830 5.94735 5.95502 6.02073 6.21410 6.25581 6.36514 6.40044 6.57384 6.62122 6.88883 7.11570 7.15691 7.22389 7.38576 7.68529 7.95244 8.05477 8.07253 8.41372 8.93783 9.51570 11.00057 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.002403 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.742254 B =11646.937386 C =12321.157067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.598 5.598 14 C 0.557 3.443 15 O -0.542 6.542 16 C -0.095 4.095 17 C -0.104 4.104 18 C -0.096 4.096 19 C -0.120 4.120 20 C 0.132 3.868 21 N -0.396 5.396 22 C -0.013 4.013 23 C -0.191 4.191 24 C -0.191 4.191 25 C -0.017 4.017 26 C -0.086 4.086 27 C 0.094 3.906 28 C 0.050 3.950 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.166 0.834 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.139 0.861 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.026 0.974 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.998 -16.148 -10.366 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.330 5.330 14 C 0.345 3.655 15 O -0.421 6.421 16 C -0.099 4.099 17 C -0.123 4.123 18 C -0.114 4.114 19 C -0.140 4.140 20 C 0.040 3.960 21 N -0.068 5.068 22 C -0.139 4.139 23 C -0.215 4.215 24 C -0.215 4.215 25 C -0.143 4.143 26 C -0.106 4.106 27 C -0.028 4.028 28 C -0.080 4.080 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.183 0.817 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.044 0.956 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.853 -16.308 -9.587 23.447 hybrid contribution -0.283 0.931 -0.729 1.215 sum 13.570 -15.377 -10.316 22.957 Atomic orbital electron populations 1.69958 1.06103 1.26909 1.50637 1.25002 0.94870 0.99384 0.95332 0.86497 0.79804 0.83067 0.78043 1.20724 1.21223 1.19732 1.21118 0.93430 0.89834 1.50515 0.91801 1.19734 0.89995 0.87134 0.96280 1.62102 1.28167 1.02731 1.33060 1.22408 0.94927 0.90483 1.01092 1.21826 0.91751 0.99796 0.87023 1.48116 1.46563 1.08278 1.30059 1.18204 0.82160 0.83494 0.81639 1.90764 1.50803 1.32070 1.68450 1.19752 0.96420 0.98470 0.95236 1.21728 0.93151 0.97315 1.00085 1.20997 0.99264 0.98417 0.92750 1.20988 0.96597 0.96747 0.99679 1.17730 0.96488 0.94446 0.87373 1.41639 1.18996 1.31703 1.14469 1.22000 0.94280 0.97319 1.00335 1.21008 0.99562 1.04777 0.96186 1.21001 0.97916 1.01689 1.00851 1.21888 0.98124 1.05270 0.89060 1.20791 0.98975 0.99080 0.91799 1.22665 0.96682 0.82483 1.01011 1.22434 0.95075 0.98975 0.91480 0.92825 0.99101 0.94957 0.95448 0.89878 0.89202 0.90559 0.83687 0.84162 0.84828 0.81680 0.84116 0.84159 0.81780 0.84305 0.90162 0.88958 0.95620 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.51 -13.60 8.41 -34.44 -0.29 -13.89 16 8 H 0.06 1.65 7.13 -52.49 -0.37 1.28 16 9 C 0.19 4.82 4.72 -4.97 -0.02 4.79 16 10 N -0.54 -10.76 4.62 -235.47 -1.09 -11.85 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.12 1.77 6.61 -3.60 -0.02 1.74 16 13 N -0.60 -8.71 3.00 -173.29 -0.52 -9.23 16 14 C 0.56 8.32 7.42 -12.32 -0.09 8.23 16 15 O -0.54 -9.63 16.24 5.32 0.09 -9.54 16 16 C -0.10 -1.16 5.34 -104.99 -0.56 -1.72 16 17 C -0.10 -1.00 7.38 -39.16 -0.29 -1.29 16 18 C -0.10 -0.75 10.02 -39.67 -0.40 -1.15 16 19 C -0.12 -1.02 9.45 -39.32 -0.37 -1.39 16 20 C 0.13 1.39 6.61 -83.64 -0.55 0.84 16 21 N -0.40 -4.18 2.97 -60.96 -0.18 -4.36 16 22 C -0.01 -0.13 10.73 -16.64 -0.18 -0.31 16 23 C -0.19 -1.85 10.86 -39.76 -0.43 -2.28 16 24 C -0.19 -1.74 10.86 -39.76 -0.43 -2.17 16 25 C -0.02 -0.15 10.73 -16.65 -0.18 -0.33 16 26 C -0.09 -1.02 9.01 -39.00 -0.35 -1.37 16 27 C 0.09 1.26 4.90 -3.37 -0.02 1.24 16 28 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H -0.01 -0.24 8.12 -51.92 -0.42 -0.66 16 31 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 34 H 0.09 1.33 7.04 -51.93 -0.37 0.97 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.15 1.23 5.78 -52.49 -0.30 0.93 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.81 6.69 -52.49 -0.35 0.46 16 39 H 0.17 1.48 7.00 -52.49 -0.37 1.11 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.16 1.02 7.00 -52.49 -0.37 0.66 16 43 H 0.14 1.66 6.62 -52.49 -0.35 1.31 16 44 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 45 H 0.09 1.04 4.55 -51.93 -0.24 0.81 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -32.36 378.03 -11.01 -43.37 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.39 Total: 1.47 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -4.33 Total: -6.09 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -1.05 Total: -50.69 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.36 -11.01 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.802 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds