Wall clock time and date at job start Tue Mar 31 2020 22:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99725 * 2 1 4 4 H 1.48499 * 109.47050 * 269.99826 * 3 2 1 5 5 H 1.48506 * 109.47040 * 29.99720 * 3 2 1 6 6 H 1.48497 * 109.47038 * 149.99846 * 3 2 1 7 7 C 1.37874 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99667 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99985 * 170.00003 * 10 9 7 12 12 C 1.53234 * 109.34356 * 187.25587 * 11 10 9 13 13 N 1.47085 * 108.51948 * 306.17712 * 12 11 10 14 14 C 1.34780 * 120.87525 * 231.18246 * 13 12 11 15 15 O 1.21547 * 120.00355 * 5.94488 * 14 13 12 16 16 C 1.47868 * 119.99714 * 185.94167 * 14 13 12 17 17 C 1.39621 * 120.11038 * 33.34709 * 16 14 13 18 18 C 1.37974 * 119.98518 * 179.97438 * 17 16 14 19 19 C 1.38268 * 120.21535 * 0.02562 * 18 17 16 20 20 C 1.38904 * 120.22659 * 359.74769 * 19 18 17 21 21 N 1.40232 * 119.99314 * 180.25429 * 20 19 18 22 22 C 1.36574 * 125.66602 * 179.97438 * 21 20 19 23 23 C 1.34846 * 108.19396 * 179.83111 * 22 21 20 24 24 C 1.40938 * 107.47358 * 0.42602 * 23 22 21 25 25 C 1.34851 * 107.46368 * 359.73415 * 24 23 22 26 26 C 1.38593 * 120.01208 * 0.50288 * 20 19 18 27 27 C 1.47080 * 118.24195 * 51.45331 * 13 12 11 28 28 C 1.46901 * 111.00377 * 294.30955 * 10 9 7 29 29 H 0.97001 * 119.99968 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46623 * 60.00700 * 9 7 2 31 31 H 1.08997 * 109.47361 * 300.00504 * 9 7 2 32 32 H 1.09007 * 109.48839 * 67.30000 * 11 10 9 33 33 H 1.08992 * 109.49401 * 307.22036 * 11 10 9 34 34 H 1.08997 * 109.63231 * 186.46382 * 12 11 10 35 35 H 1.08998 * 109.62704 * 65.88212 * 12 11 10 36 36 H 1.08002 * 120.00373 * 359.95551 * 17 16 14 37 37 H 1.07992 * 119.89370 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.88468 * 180.02562 * 19 18 17 39 39 H 1.07992 * 125.89748 * 359.97438 * 22 21 20 40 40 H 1.08004 * 126.26474 * 180.15742 * 23 22 21 41 41 H 1.08001 * 126.27012 * 179.75601 * 24 23 22 42 42 H 1.07998 * 125.89745 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.10344 * 179.77349 * 26 20 19 44 44 H 1.09000 * 109.62452 * 68.24807 * 27 13 12 45 45 H 1.08992 * 109.63188 * 188.82950 * 27 13 12 46 46 H 1.09003 * 109.48883 * 292.70619 * 28 10 9 47 47 H 1.08996 * 109.49105 * 52.78313 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0015 11 6 1.5216 -4.8933 0.2407 12 6 2.5642 -6.0029 0.4133 13 7 3.4613 -5.9864 -0.7522 14 6 3.7112 -7.1129 -1.4488 15 8 3.1111 -8.1364 -1.1848 16 6 4.7153 -7.1035 -2.5341 17 6 5.8434 -6.2865 -2.4377 18 6 6.7790 -6.2802 -3.4517 19 6 6.6036 -7.0808 -4.5653 20 6 5.4870 -7.9005 -4.6683 21 7 5.3167 -8.7145 -5.7975 22 6 4.2681 -9.5614 -6.0178 23 6 4.4573 -10.1648 -7.2088 24 6 5.6701 -9.6817 -7.7400 25 6 6.1746 -8.7963 -6.8568 26 6 4.5386 -7.9104 -3.6577 27 6 4.0832 -4.7093 -1.1338 28 6 2.9761 -3.6495 -1.2489 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5574 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 0.8794 -5.1266 -0.6087 33 1 0.9170 -4.8185 1.1445 34 1 2.0638 -6.9691 0.4764 35 1 3.1405 -5.8258 1.3213 36 1 5.9834 -5.6593 -1.5696 37 1 7.6512 -5.6480 -3.3754 38 1 7.3395 -7.0720 -5.3557 39 1 3.4310 -9.7187 -5.3540 40 1 3.8018 -10.8892 -7.6692 41 1 6.1139 -9.9678 -8.6821 42 1 7.0975 -8.2466 -6.9682 43 1 3.6681 -8.5445 -3.7380 44 1 4.8026 -4.4102 -0.3714 45 1 4.5874 -4.8199 -2.0937 46 1 2.3136 -3.9000 -2.0775 47 1 3.4263 -2.6727 -1.4253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:36 Heat of formation + Delta-G solvation = 55.909533 kcal Electronic energy + Delta-G solvation = -28579.455827 eV Core-core repulsion = 24728.112475 eV Total energy + Delta-G solvation = -3851.343352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.64708 -41.61721 -39.62598 -38.84369 -36.14350 -34.66808 -34.11722 -32.75209 -32.00466 -30.20743 -29.81248 -29.72522 -27.46545 -25.18499 -24.98822 -23.95497 -23.63775 -22.35485 -21.22574 -20.99505 -20.36539 -19.31406 -18.49656 -17.96698 -17.24036 -17.13114 -16.70401 -16.62970 -16.03866 -16.00522 -15.92753 -15.41986 -15.36459 -15.29210 -14.93602 -14.60099 -14.45413 -14.34146 -14.13175 -13.59081 -13.48860 -13.27753 -13.20681 -13.04574 -12.86249 -12.71134 -12.62318 -12.53789 -12.35831 -12.26983 -12.15743 -11.77371 -11.29447 -11.13977 -10.79562 -10.62049 -10.22689 -9.84734 -9.24756 -9.11169 -9.04671 -8.20160 -6.30824 -0.35495 -0.06423 1.30775 1.44070 1.45540 1.56899 1.58211 1.78368 1.92440 2.02799 2.41289 2.66270 3.12061 3.17417 3.24221 3.63750 3.79803 3.82656 3.97137 4.01075 4.03206 4.11252 4.19265 4.22116 4.25990 4.37781 4.41806 4.51585 4.57138 4.67438 4.67767 4.77055 4.79587 4.90433 4.94806 4.96439 5.11150 5.17274 5.19994 5.21698 5.28606 5.33203 5.36624 5.60603 5.63651 5.93755 6.00895 6.15623 6.18156 6.30201 6.42136 6.52362 6.85107 6.91008 7.39420 8.91322 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.002403 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.742254 B =11646.937386 C =12321.157067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.207 3.793 10 N -0.535 5.535 11 C 0.042 3.958 12 C 0.127 3.873 13 N -0.601 5.601 14 C 0.556 3.444 15 O -0.580 6.580 16 C -0.116 4.116 17 C -0.103 4.103 18 C -0.082 4.082 19 C -0.111 4.111 20 C 0.120 3.880 21 N -0.405 5.405 22 C -0.042 4.042 23 C -0.199 4.199 24 C -0.204 4.204 25 C -0.019 4.019 26 C -0.104 4.104 27 C 0.107 3.893 28 C 0.048 3.952 29 H 0.263 0.737 30 H -0.044 1.044 31 H 0.005 0.995 32 H 0.010 0.990 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.161 0.839 37 H 0.181 0.819 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.196 0.804 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.120 0.880 46 H 0.007 0.993 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.186 -15.281 -11.305 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.558 4.558 8 H 0.091 0.909 9 C 0.081 3.919 10 N -0.259 5.259 11 C -0.087 4.087 12 C 0.004 3.996 13 N -0.332 5.332 14 C 0.346 3.654 15 O -0.461 6.461 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.100 4.100 19 C -0.131 4.131 20 C 0.028 3.972 21 N -0.077 5.077 22 C -0.168 4.168 23 C -0.223 4.223 24 C -0.227 4.227 25 C -0.145 4.145 26 C -0.125 4.125 27 C -0.015 4.015 28 C -0.081 4.081 29 H 0.072 0.928 30 H -0.027 1.027 31 H 0.023 0.977 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.178 0.822 37 H 0.198 0.802 38 H 0.182 0.818 39 H 0.181 0.819 40 H 0.171 0.829 41 H 0.179 0.821 42 H 0.213 0.787 43 H 0.139 0.861 44 H 0.121 0.879 45 H 0.138 0.862 46 H 0.026 0.974 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.066 -15.458 -10.535 26.006 hybrid contribution -1.607 0.579 -0.504 1.781 sum 16.459 -14.879 -11.038 24.781 Atomic orbital electron populations 1.70106 1.07990 1.27914 1.51843 1.25977 0.95689 1.03459 0.94820 0.85340 0.78682 0.77958 0.78390 1.19834 1.21348 1.18236 1.21454 0.93943 0.90475 1.49896 0.90854 1.19394 0.90129 0.89056 0.93318 1.62048 1.26956 1.02411 1.34513 1.22446 0.95658 0.90169 1.00441 1.21699 0.91411 0.98394 0.88054 1.48180 1.46451 1.08754 1.29847 1.18670 0.82149 0.82822 0.81738 1.90735 1.52449 1.33400 1.69532 1.19585 0.97123 1.00561 0.94656 1.21937 0.92386 0.96660 1.01189 1.21443 0.99534 0.97736 0.91266 1.21427 0.95882 0.95211 1.00552 1.17918 0.97035 0.95133 0.87119 1.41788 1.19259 1.31788 1.14889 1.22200 0.95041 0.98469 1.01102 1.21326 1.00204 1.04769 0.95998 1.21357 0.97729 1.01822 1.01820 1.22479 0.98707 1.05101 0.88234 1.20729 0.99361 0.99561 0.92806 1.22716 0.95070 0.80328 1.03367 1.22506 0.95623 1.00348 0.89632 0.92791 1.02658 0.97657 0.97147 0.89738 0.89230 0.88868 0.82158 0.80183 0.81793 0.81880 0.82949 0.82140 0.78690 0.86059 0.87911 0.86214 0.97427 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.67 13.29 21.45 0.28 -55.39 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 42.36 29.54 68.60 2.03 44.38 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.52 -27.93 8.41 25.60 0.22 -27.71 16 8 H 0.07 3.73 7.13 -2.91 -0.02 3.71 16 9 C 0.21 10.75 4.72 85.56 0.40 11.16 16 10 N -0.53 -21.85 4.62 -898.89 -4.15 -26.00 16 11 C 0.04 1.51 5.62 86.38 0.49 1.99 16 12 C 0.13 3.77 6.61 86.35 0.57 4.34 16 13 N -0.60 -17.05 3.00 -820.45 -2.46 -19.51 16 14 C 0.56 16.60 7.42 86.79 0.64 17.25 16 15 O -0.58 -21.30 16.24 -3.86 -0.06 -21.36 16 16 C -0.12 -2.72 5.34 -20.10 -0.11 -2.83 16 17 C -0.10 -1.64 7.38 22.54 0.17 -1.47 16 18 C -0.08 -0.89 10.02 22.21 0.22 -0.67 16 19 C -0.11 -1.44 9.45 22.44 0.21 -1.23 16 20 C 0.12 2.36 6.61 38.04 0.25 2.62 16 21 N -0.41 -8.14 2.97 -346.79 -1.03 -9.17 16 22 C -0.04 -0.89 10.73 83.18 0.89 0.00 16 23 C -0.20 -3.78 10.86 22.15 0.24 -3.54 16 24 C -0.20 -3.37 10.86 22.15 0.24 -3.13 16 25 C -0.02 -0.31 10.73 83.18 0.89 0.59 16 26 C -0.10 -2.48 9.01 22.65 0.20 -2.28 16 27 C 0.11 2.64 4.90 86.50 0.42 3.07 16 28 C 0.05 1.67 5.47 86.54 0.47 2.15 16 29 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 30 H -0.04 -2.56 8.12 -2.38 -0.02 -2.58 16 31 H 0.01 0.30 7.97 -2.39 -0.02 0.28 16 32 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.08 2.97 7.99 -2.39 -0.02 2.95 16 34 H 0.09 2.70 7.04 -2.39 -0.02 2.69 16 35 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.16 2.03 5.78 -2.91 -0.02 2.01 16 37 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 38 H 0.16 1.11 6.69 -2.91 -0.02 1.09 16 39 H 0.16 3.28 7.00 -2.91 -0.02 3.26 16 40 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.20 1.63 7.00 -2.91 -0.02 1.61 16 43 H 0.12 3.19 6.62 -2.91 -0.02 3.17 16 44 H 0.10 2.17 7.96 -2.39 -0.02 2.15 16 45 H 0.12 2.35 4.55 -2.39 -0.01 2.34 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.09 3.34 6.67 -2.39 -0.02 3.32 16 Total: -1.00 -73.49 378.03 2.48 -71.01 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.98 Total: 15.36 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.89 Total: 0.68 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -7.36 Total: -110.07 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.36 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -73.49 2.48 -71.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.921 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds