Wall clock time and date at job start Tue Mar 31 2020 22:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 120.00431 * 2 1 4 4 H 1.48496 * 109.46915 * 269.99559 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99336 * 3 2 1 6 6 H 1.48494 * 109.47371 * 149.99345 * 3 2 1 7 7 C 1.39946 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99934 * 163.62641 * 7 2 1 9 9 C 1.41395 * 120.00390 * 343.63115 * 7 2 1 10 10 C 1.40731 * 120.24367 * 334.06229 * 9 7 2 11 11 C 1.37591 * 119.74478 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25188 * 0.02562 * 11 10 9 13 13 C 1.38621 * 120.50024 * 359.72159 * 12 11 10 14 14 C 1.37636 * 120.24143 * 0.55606 * 13 12 11 15 15 C 1.50706 * 120.12588 * 179.72266 * 14 13 12 16 16 C 1.50698 * 109.46957 * 264.72922 * 15 14 13 17 17 O 1.21279 * 120.00171 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99748 * 180.02562 * 16 15 14 19 19 C 1.46924 * 120.63254 * 359.97438 * 18 16 15 20 20 C 1.53194 * 108.77545 * 126.41273 * 19 18 16 21 21 C 1.53037 * 109.31107 * 54.63540 * 20 19 18 22 22 C 1.53040 * 109.54097 * 298.63561 * 21 20 19 23 23 H 1.08996 * 109.49252 * 301.38139 * 22 21 20 24 24 C 1.50697 * 109.49998 * 181.31684 * 22 21 20 25 25 C 1.39868 * 125.89729 * 274.71657 * 24 22 21 26 26 C 1.35314 * 107.92060 * 180.26384 * 25 24 22 27 27 N 1.34949 * 107.74704 * 359.97438 * 26 25 24 28 28 H 0.97003 * 126.04014 * 179.97438 * 27 26 25 29 29 N 1.30837 * 125.90165 * 95.01954 * 24 22 21 30 30 C 1.46925 * 120.62859 * 180.02562 * 18 16 15 31 31 H 0.97003 * 119.99411 * 0.02562 * 1 2 3 32 32 H 1.08002 * 120.12406 * 359.97438 * 10 9 7 33 33 H 1.08004 * 119.87468 * 179.97438 * 11 10 9 34 34 H 1.08002 * 119.75352 * 180.02562 * 12 11 10 35 35 H 1.07999 * 119.87484 * 180.29866 * 13 12 11 36 36 H 1.08997 * 109.47534 * 144.72287 * 15 14 13 37 37 H 1.09004 * 109.46907 * 24.72479 * 15 14 13 38 38 H 1.09010 * 109.58688 * 6.62901 * 19 18 16 39 39 H 1.08995 * 109.70478 * 246.27815 * 19 18 16 40 40 H 1.09001 * 109.49635 * 294.68436 * 20 19 18 41 41 H 1.09005 * 109.49471 * 174.58821 * 20 19 18 42 42 H 1.09001 * 109.45966 * 178.61180 * 21 20 19 43 43 H 1.09003 * 109.44919 * 58.64961 * 21 20 19 44 44 H 1.08002 * 126.04353 * 0.21095 * 25 24 22 45 45 H 1.07999 * 126.12714 * 180.02562 * 26 25 24 46 46 H 1.08996 * 109.58428 * 113.80008 * 30 18 16 47 47 H 1.09003 * 109.58822 * 353.37298 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0550 -1.2312 -0.2631 9 6 1.3439 -2.4116 0.3462 10 6 0.2132 -2.3800 1.1834 11 6 -0.4248 -3.5535 1.5136 12 6 0.0427 -4.7640 1.0252 13 6 1.1524 -4.8066 0.1956 14 6 1.8096 -3.6457 -0.1432 15 6 3.0195 -3.6957 -1.0403 16 6 4.2687 -3.7243 -0.1979 17 8 4.1848 -3.7054 1.0119 18 7 5.4792 -3.7698 -0.7888 19 6 5.5970 -3.7925 -2.2532 20 6 6.5307 -2.6595 -2.6904 21 6 7.8641 -2.7885 -1.9505 22 6 7.6273 -2.6650 -0.4436 23 1 7.1606 -1.7042 -0.2263 24 6 8.9447 -2.7598 0.2820 25 6 9.5850 -3.9418 0.6683 26 6 10.7355 -3.6060 1.2964 27 7 10.8206 -2.2592 1.3066 28 1 11.5409 -1.7358 1.6916 29 7 9.6844 -1.7506 0.6643 30 6 6.7060 -3.7986 0.0191 31 1 -0.4849 0.8401 -0.0004 32 1 -0.1519 -1.4382 1.5660 33 1 -1.2924 -3.5317 2.1564 34 1 -0.4645 -5.6803 1.2892 35 1 1.5050 -5.7547 -0.1830 36 1 3.0335 -2.8141 -1.6811 37 1 2.9771 -4.5930 -1.6578 38 1 4.6136 -3.6491 -2.7012 39 1 6.0084 -4.7495 -2.5739 40 1 6.0737 -1.6990 -2.4520 41 1 6.7029 -2.7242 -3.7648 42 1 8.5391 -1.9978 -2.2781 43 1 8.3084 -3.7594 -2.1699 44 1 9.2244 -4.9452 0.4965 45 1 11.4569 -4.2927 1.7138 46 1 7.2090 -4.7563 -0.1146 47 1 6.4545 -3.6593 1.0705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777371312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:20 Heat of formation + Delta-G solvation = 50.208224 kcal Electronic energy + Delta-G solvation = -29317.919888 eV Core-core repulsion = 25466.329309 eV Total energy + Delta-G solvation = -3851.590579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39122 -39.72267 -37.74232 -36.71883 -33.63519 -33.55438 -31.87361 -31.63964 -30.23205 -29.73836 -29.36949 -26.98382 -25.24315 -24.69848 -23.58888 -21.71454 -21.40706 -20.86412 -19.95202 -19.22175 -18.34246 -18.24580 -17.07836 -16.57903 -15.60293 -15.32151 -14.92425 -14.87291 -14.71747 -14.40025 -14.04923 -13.88164 -13.76204 -13.50947 -13.36428 -13.15762 -12.75809 -12.58596 -12.46764 -12.39361 -11.65212 -11.51802 -11.37672 -11.10158 -11.06496 -10.96104 -10.93516 -10.79364 -10.70629 -10.63006 -10.62133 -10.33537 -9.50493 -9.41471 -9.29544 -9.09548 -9.04975 -8.88815 -8.27128 -7.24493 -7.21818 -6.67502 -4.27270 1.73496 2.62160 2.68902 2.84865 3.02877 3.11559 3.17941 3.33096 3.37365 3.49546 3.99776 4.42752 4.61729 4.72104 4.82128 4.85378 4.95476 5.13297 5.30233 5.36652 5.44127 5.52024 5.58310 5.61485 5.77529 5.80640 5.83822 5.84395 5.99781 6.02931 6.09266 6.13677 6.25843 6.33349 6.35130 6.47267 6.49366 6.57461 6.83943 6.91157 7.09499 7.15370 7.36319 7.49131 7.53984 7.70343 7.86926 8.00286 8.14433 8.19822 8.38506 8.71702 8.90447 8.98802 9.08608 10.26743 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.003455 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.406605 B = 8101.860114 C = 9154.379473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.180 4.180 15 C -0.069 4.069 16 C 0.519 3.481 17 O -0.519 6.519 18 N -0.625 5.625 19 C 0.108 3.892 20 C -0.137 4.137 21 C -0.103 4.103 22 C -0.025 4.025 23 H 0.091 0.909 24 C 0.093 3.907 25 C -0.266 4.266 26 C 0.055 3.945 27 N -0.482 5.482 28 H 0.437 0.563 29 N -0.292 5.292 30 C 0.126 3.874 31 H 0.279 0.721 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.148 0.852 45 H 0.175 0.825 46 H 0.065 0.935 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.598 -5.788 -4.830 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.182 4.182 15 C -0.108 4.108 16 C 0.309 3.691 17 O -0.392 6.392 18 N -0.362 5.362 19 C -0.015 4.015 20 C -0.175 4.175 21 C -0.142 4.142 22 C -0.046 4.046 23 H 0.109 0.891 24 C -0.075 4.075 25 C -0.295 4.295 26 C -0.093 4.093 27 N -0.189 5.189 28 H 0.281 0.719 29 N -0.115 5.115 30 C 0.002 3.998 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.166 0.834 45 H 0.192 0.808 46 H 0.083 0.917 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.433 -4.363 -4.123 19.385 hybrid contribution 0.863 0.171 0.247 0.914 sum 19.295 -4.192 -3.875 20.122 Atomic orbital electron populations 1.69825 1.07455 1.28975 1.35910 1.25856 0.94654 1.01045 0.92350 0.86455 0.80925 0.81103 0.79164 1.19507 1.20116 1.18489 1.19460 0.97164 0.90967 1.40906 0.90809 1.17328 0.90734 0.91267 0.87975 1.21283 0.99064 0.96647 1.00897 1.20664 0.98638 0.93481 0.99800 1.20298 1.01685 0.96115 1.07847 1.20296 0.95954 0.95529 0.98197 1.19068 0.99194 0.94035 1.05938 1.20289 0.90525 1.02555 0.97449 1.21259 0.84076 0.74575 0.89239 1.90672 1.86216 1.47573 1.14787 1.48216 1.05646 1.75956 1.06354 1.21696 1.01124 0.98203 0.80483 1.21957 0.95552 1.00012 1.00002 1.21483 0.97459 1.02313 0.92930 1.19958 0.89028 1.01462 0.94190 0.89109 1.22173 0.96481 0.90907 0.97899 1.21450 0.97643 0.99737 1.10705 1.22577 0.99786 0.85849 1.01055 1.46349 1.19920 1.05290 1.47364 0.71924 1.77342 0.96092 1.22102 1.15919 1.21393 0.84442 0.96605 0.97348 0.91035 0.86600 0.89653 0.89723 0.89790 0.88577 0.90674 0.89119 0.91736 0.90887 0.90528 0.91680 0.91505 0.83410 0.80772 0.91672 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.84 10.97 55.55 0.61 -20.23 16 2 C 0.08 2.00 5.16 -17.34 -0.09 1.91 16 3 Si 0.90 19.32 29.59 -169.99 -5.03 14.29 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.46 -12.17 8.14 -37.74 -0.31 -12.48 16 8 H 0.07 1.93 6.67 -52.49 -0.35 1.58 16 9 C 0.13 3.51 5.56 -106.83 -0.59 2.92 16 10 C -0.16 -4.34 8.68 -38.88 -0.34 -4.68 16 11 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 12 C -0.24 -5.69 10.05 -39.29 -0.39 -6.09 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 14 C -0.18 -4.40 4.43 -103.91 -0.46 -4.86 16 15 C -0.07 -1.36 3.53 -29.03 -0.10 -1.46 16 16 C 0.52 10.37 7.33 -10.98 -0.08 10.29 16 17 O -0.52 -12.74 15.45 5.56 0.09 -12.65 16 18 N -0.63 -9.58 2.97 -172.74 -0.51 -10.09 16 19 C 0.11 1.23 6.34 -3.71 -0.02 1.21 16 20 C -0.14 -1.41 6.08 -26.61 -0.16 -1.57 16 21 C -0.10 -1.08 5.15 -26.69 -0.14 -1.22 16 22 C -0.02 -0.32 2.80 -91.63 -0.26 -0.58 16 23 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 24 C 0.09 1.18 6.14 -82.41 -0.51 0.68 16 25 C -0.27 -2.74 9.95 -40.01 -0.40 -3.14 16 26 C 0.05 0.45 11.99 -17.22 -0.21 0.24 16 27 N -0.48 -4.53 7.36 30.45 0.22 -4.31 16 28 H 0.44 2.63 8.96 -182.61 -1.64 0.99 16 29 N -0.29 -3.92 12.70 33.67 0.43 -3.49 16 30 C 0.13 1.77 5.41 -3.69 -0.02 1.75 16 31 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 32 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 33 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.10 1.87 6.61 -51.93 -0.34 1.53 16 37 H 0.07 1.24 7.85 -51.93 -0.41 0.84 16 38 H 0.09 1.02 5.93 -51.92 -0.31 0.71 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.15 1.29 7.29 -52.49 -0.38 0.90 16 45 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.07 0.77 7.04 -51.93 -0.37 0.40 16 47 H 0.09 1.58 7.01 -51.93 -0.36 1.21 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -33.90 379.75 -11.18 -45.08 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.85 Total: 8.13 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -4.86 Total: -22.45 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.75 Total: -38.12 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.90 -11.18 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777371312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.290 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds