Wall clock time and date at job start Tue Mar 31 2020 22:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 120.00431 * 2 1 4 4 H 1.48496 * 109.46915 * 269.99559 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99336 * 3 2 1 6 6 H 1.48494 * 109.47371 * 149.99345 * 3 2 1 7 7 C 1.39946 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99934 * 163.62641 * 7 2 1 9 9 C 1.41395 * 120.00390 * 343.63115 * 7 2 1 10 10 C 1.40731 * 120.24367 * 334.06229 * 9 7 2 11 11 C 1.37591 * 119.74478 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25188 * 0.02562 * 11 10 9 13 13 C 1.38621 * 120.50024 * 359.72159 * 12 11 10 14 14 C 1.37636 * 120.24143 * 0.55606 * 13 12 11 15 15 C 1.50706 * 120.12588 * 179.72266 * 14 13 12 16 16 C 1.50698 * 109.46957 * 264.72922 * 15 14 13 17 17 O 1.21279 * 120.00171 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99748 * 180.02562 * 16 15 14 19 19 C 1.46924 * 120.63254 * 359.97438 * 18 16 15 20 20 C 1.53194 * 108.77545 * 126.41273 * 19 18 16 21 21 C 1.53037 * 109.31107 * 54.63540 * 20 19 18 22 22 C 1.53040 * 109.54097 * 298.63561 * 21 20 19 23 23 H 1.08996 * 109.49252 * 301.38139 * 22 21 20 24 24 C 1.50697 * 109.49998 * 181.31684 * 22 21 20 25 25 C 1.39868 * 125.89729 * 274.71657 * 24 22 21 26 26 C 1.35314 * 107.92060 * 180.26384 * 25 24 22 27 27 N 1.34949 * 107.74704 * 359.97438 * 26 25 24 28 28 H 0.97003 * 126.04014 * 179.97438 * 27 26 25 29 29 N 1.30837 * 125.90165 * 95.01954 * 24 22 21 30 30 C 1.46925 * 120.62859 * 180.02562 * 18 16 15 31 31 H 0.97003 * 119.99411 * 0.02562 * 1 2 3 32 32 H 1.08002 * 120.12406 * 359.97438 * 10 9 7 33 33 H 1.08004 * 119.87468 * 179.97438 * 11 10 9 34 34 H 1.08002 * 119.75352 * 180.02562 * 12 11 10 35 35 H 1.07999 * 119.87484 * 180.29866 * 13 12 11 36 36 H 1.08997 * 109.47534 * 144.72287 * 15 14 13 37 37 H 1.09004 * 109.46907 * 24.72479 * 15 14 13 38 38 H 1.09010 * 109.58688 * 6.62901 * 19 18 16 39 39 H 1.08995 * 109.70478 * 246.27815 * 19 18 16 40 40 H 1.09001 * 109.49635 * 294.68436 * 20 19 18 41 41 H 1.09005 * 109.49471 * 174.58821 * 20 19 18 42 42 H 1.09001 * 109.45966 * 178.61180 * 21 20 19 43 43 H 1.09003 * 109.44919 * 58.64961 * 21 20 19 44 44 H 1.08002 * 126.04353 * 0.21095 * 25 24 22 45 45 H 1.07999 * 126.12714 * 180.02562 * 26 25 24 46 46 H 1.08996 * 109.58428 * 113.80008 * 30 18 16 47 47 H 1.09003 * 109.58822 * 353.37298 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0550 -1.2312 -0.2631 9 6 1.3439 -2.4116 0.3462 10 6 0.2132 -2.3800 1.1834 11 6 -0.4248 -3.5535 1.5136 12 6 0.0427 -4.7640 1.0252 13 6 1.1524 -4.8066 0.1956 14 6 1.8096 -3.6457 -0.1432 15 6 3.0195 -3.6957 -1.0403 16 6 4.2687 -3.7243 -0.1979 17 8 4.1848 -3.7054 1.0119 18 7 5.4792 -3.7698 -0.7888 19 6 5.5970 -3.7925 -2.2532 20 6 6.5307 -2.6595 -2.6904 21 6 7.8641 -2.7885 -1.9505 22 6 7.6273 -2.6650 -0.4436 23 1 7.1606 -1.7042 -0.2263 24 6 8.9447 -2.7598 0.2820 25 6 9.5850 -3.9418 0.6683 26 6 10.7355 -3.6060 1.2964 27 7 10.8206 -2.2592 1.3066 28 1 11.5409 -1.7358 1.6916 29 7 9.6844 -1.7506 0.6643 30 6 6.7060 -3.7986 0.0191 31 1 -0.4849 0.8401 -0.0004 32 1 -0.1519 -1.4382 1.5660 33 1 -1.2924 -3.5317 2.1564 34 1 -0.4645 -5.6803 1.2892 35 1 1.5050 -5.7547 -0.1830 36 1 3.0335 -2.8141 -1.6811 37 1 2.9771 -4.5930 -1.6578 38 1 4.6136 -3.6491 -2.7012 39 1 6.0084 -4.7495 -2.5739 40 1 6.0737 -1.6990 -2.4520 41 1 6.7029 -2.7242 -3.7648 42 1 8.5391 -1.9978 -2.2781 43 1 8.3084 -3.7594 -2.1699 44 1 9.2244 -4.9452 0.4965 45 1 11.4569 -4.2927 1.7138 46 1 7.2090 -4.7563 -0.1146 47 1 6.4545 -3.6593 1.0705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777371312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:19 Heat of formation + Delta-G solvation = 29.875265 kcal Electronic energy + Delta-G solvation = -29318.801592 eV Core-core repulsion = 25466.329309 eV Total energy + Delta-G solvation = -3852.472283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20380 -41.08546 -39.38955 -38.19552 -35.49344 -34.77201 -33.32697 -32.86988 -31.34989 -31.09620 -30.61169 -28.63330 -27.00449 -25.96444 -24.68841 -22.81234 -22.61959 -22.34742 -21.56669 -20.21008 -19.67869 -19.02373 -18.98295 -17.97558 -17.30948 -16.75874 -16.32823 -16.17636 -15.80834 -15.60671 -15.43700 -15.27825 -14.93537 -14.80118 -14.47332 -14.37745 -14.20345 -13.86800 -13.75916 -13.56746 -13.36114 -13.27122 -12.88632 -12.76841 -12.65395 -12.48551 -12.30615 -12.15044 -11.90244 -11.82390 -11.67257 -11.52082 -11.30430 -11.17273 -11.02018 -10.65660 -10.36308 -9.65188 -9.50692 -9.20878 -9.13498 -8.59734 -6.28268 0.97846 1.00686 1.14817 1.32959 1.43784 1.51821 1.77424 1.87094 1.99459 2.18413 2.27044 2.78696 3.56905 3.66459 3.77063 3.89030 4.08706 4.11842 4.16453 4.24655 4.36381 4.39898 4.43474 4.60003 4.62243 4.63919 4.71624 4.74299 4.80424 4.81354 4.90290 4.91471 4.97360 5.06515 5.13304 5.19164 5.20578 5.24399 5.38388 5.45514 5.56633 5.63492 5.73372 5.79203 6.05511 6.18356 6.23261 6.43792 6.50067 6.53803 6.74228 6.75553 7.00538 7.12875 7.41813 8.36838 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.003455 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.406605 B = 8101.860114 C = 9154.379473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.040 3.960 3 Si 0.964 3.036 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.275 1.275 7 C -0.482 4.482 8 H 0.066 0.934 9 C 0.096 3.904 10 C -0.195 4.195 11 C -0.118 4.118 12 C -0.241 4.241 13 C -0.091 4.091 14 C -0.186 4.186 15 C -0.065 4.065 16 C 0.517 3.483 17 O -0.579 6.579 18 N -0.616 5.616 19 C 0.099 3.901 20 C -0.133 4.133 21 C -0.095 4.095 22 C -0.019 4.019 23 H 0.051 0.949 24 C 0.077 3.923 25 C -0.287 4.287 26 C 0.075 3.925 27 N -0.475 5.475 28 H 0.450 0.550 29 N -0.342 5.342 30 C 0.130 3.870 31 H 0.286 0.714 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.164 0.836 45 H 0.222 0.778 46 H 0.097 0.903 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.015 -7.832 -6.556 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.200 1.200 7 C -0.512 4.512 8 H 0.085 0.915 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.261 4.261 13 C -0.109 4.109 14 C -0.188 4.188 15 C -0.104 4.104 16 C 0.307 3.693 17 O -0.457 6.457 18 N -0.350 5.350 19 C -0.022 4.022 20 C -0.171 4.171 21 C -0.133 4.133 22 C -0.041 4.041 23 H 0.070 0.930 24 C -0.090 4.090 25 C -0.317 4.317 26 C -0.073 4.073 27 N -0.184 5.184 28 H 0.297 0.703 29 N -0.167 5.167 30 C 0.007 3.993 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.182 0.818 45 H 0.239 0.761 46 H 0.115 0.885 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.875 -6.403 -5.905 22.619 hybrid contribution 0.186 0.688 0.817 1.084 sum 21.062 -5.715 -5.088 22.408 Atomic orbital electron populations 1.69876 1.08626 1.30113 1.36524 1.26564 0.95361 1.03832 0.91653 0.85481 0.78814 0.77267 0.79881 1.17619 1.19011 1.19955 1.19566 0.96930 0.92071 1.42605 0.91542 1.17719 0.91352 0.92800 0.88765 1.21291 1.00628 0.96833 1.02675 1.20941 0.99188 0.93391 1.00087 1.20731 1.01649 0.96719 1.06953 1.20750 0.95665 0.96665 0.97853 1.19572 1.00254 0.93447 1.05514 1.20286 0.88906 1.04333 0.96880 1.21219 0.85463 0.74234 0.88394 1.90647 1.87212 1.50792 1.17082 1.48227 1.04621 1.73819 1.08358 1.22083 1.02067 1.00460 0.77591 1.21955 0.94904 0.98293 1.01941 1.21449 0.97609 1.03550 0.90679 1.19812 0.89089 0.98834 0.96340 0.92997 1.22198 0.96346 0.92052 0.98398 1.21728 0.98488 0.99651 1.11785 1.23294 0.99568 0.85590 0.98800 1.46397 1.19277 1.06194 1.46558 0.70345 1.77247 0.97969 1.23509 1.17934 1.21421 0.84100 0.98603 0.95191 0.90370 0.88670 0.87708 0.86573 0.86335 0.88692 0.86762 0.88775 0.88075 0.93393 0.87170 0.91774 0.89125 0.81847 0.76129 0.88458 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.89 10.97 21.83 0.24 -44.65 16 2 C 0.04 2.14 5.16 85.26 0.44 2.58 16 3 Si 0.96 41.05 29.59 68.60 2.03 43.08 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.48 -27.02 8.14 23.46 0.19 -26.83 16 8 H 0.07 3.68 6.67 -2.91 -0.02 3.66 16 9 C 0.10 5.41 5.56 -21.29 -0.12 5.30 16 10 C -0.19 -11.09 8.68 22.73 0.20 -10.89 16 11 C -0.12 -5.95 10.02 22.22 0.22 -5.72 16 12 C -0.24 -11.20 10.05 22.46 0.23 -10.97 16 13 C -0.09 -4.18 9.66 22.22 0.21 -3.96 16 14 C -0.19 -9.17 4.43 -19.40 -0.09 -9.25 16 15 C -0.06 -2.53 3.53 29.10 0.10 -2.43 16 16 C 0.52 20.90 7.33 87.66 0.64 21.54 16 17 O -0.58 -29.63 15.45 -3.03 -0.05 -29.68 16 18 N -0.62 -18.46 2.97 -818.81 -2.43 -20.89 16 19 C 0.10 2.00 6.34 86.36 0.55 2.55 16 20 C -0.13 -2.46 6.08 30.67 0.19 -2.27 16 21 C -0.09 -1.81 5.15 30.62 0.16 -1.65 16 22 C -0.02 -0.50 2.80 -11.45 -0.03 -0.53 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 C 0.08 1.92 6.14 43.10 0.26 2.18 16 25 C -0.29 -5.33 9.95 21.99 0.22 -5.11 16 26 C 0.08 1.01 11.99 83.54 1.00 2.01 16 27 N -0.47 -8.21 7.36 -57.59 -0.42 -8.63 16 28 H 0.45 4.68 8.96 -213.33 -1.91 2.77 16 29 N -0.34 -9.22 12.70 -47.39 -0.60 -9.82 16 30 C 0.13 3.64 5.41 86.38 0.47 4.11 16 31 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 32 H 0.10 5.67 6.22 -2.91 -0.02 5.65 16 33 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.10 3.73 6.61 -2.39 -0.02 3.71 16 37 H 0.11 3.48 7.85 -2.39 -0.02 3.46 16 38 H 0.09 1.86 5.93 -2.38 -0.01 1.85 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.16 2.36 7.29 -2.91 -0.02 2.34 16 45 H 0.22 0.72 8.06 -2.91 -0.02 0.69 16 46 H 0.10 2.09 7.04 -2.39 -0.02 2.08 16 47 H 0.05 1.99 7.01 -2.39 -0.02 1.97 16 Total: -1.00 -80.06 379.75 2.70 -77.36 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.91 Total: 32.59 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 4.84 Total: -39.36 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.22 Total: -84.00 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.05 Total: -29.68 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -80.06 2.70 -77.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777371312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.237 kcal (2) G-P(sol) polarization free energy of solvation -80.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds