Wall clock time and date at job start Tue Mar 31 2020 22:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46966 * 300.00120 * 3 2 1 6 6 H 1.48498 * 109.47208 * 59.99643 * 3 2 1 7 7 C 1.39944 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99862 * 163.70890 * 7 2 1 9 9 C 1.41405 * 120.00080 * 343.70253 * 7 2 1 10 10 C 1.40735 * 120.24311 * 334.19584 * 9 7 2 11 11 C 1.37597 * 119.73941 * 180.27079 * 10 9 7 12 12 C 1.38657 * 120.25043 * 359.71066 * 11 10 9 13 13 C 1.38608 * 120.50342 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24652 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.12679 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47097 * 264.99824 * 15 14 13 17 17 O 1.21280 * 119.99986 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99989 * 180.02562 * 16 15 14 19 19 C 1.46925 * 120.63143 * 0.02562 * 18 16 15 20 20 C 1.53191 * 108.77208 * 233.58686 * 19 18 16 21 21 C 1.53032 * 109.31738 * 305.36187 * 20 19 18 22 22 C 1.53046 * 109.53445 * 61.37105 * 21 20 19 23 23 H 1.08993 * 109.49633 * 58.61787 * 22 21 20 24 24 C 1.50704 * 109.49586 * 178.68377 * 22 21 20 25 25 N 1.30500 * 125.65000 * 264.97131 * 24 22 21 26 26 C 1.34124 * 109.25627 * 180.02562 * 25 24 22 27 27 C 1.34675 * 108.02357 * 0.26655 * 26 25 24 28 28 N 1.35045 * 125.64999 * 85.00050 * 24 22 21 29 29 H 0.97003 * 126.39439 * 0.02562 * 28 24 22 30 30 C 1.46930 * 120.62737 * 179.97438 * 18 16 15 31 31 H 0.96999 * 120.00465 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.12569 * 0.02562 * 10 9 7 33 33 H 1.08005 * 119.87137 * 179.72024 * 11 10 9 34 34 H 1.07998 * 119.74616 * 180.02562 * 12 11 10 35 35 H 1.07998 * 119.88110 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47055 * 145.00249 * 15 14 13 37 37 H 1.08995 * 109.47064 * 25.00023 * 15 14 13 38 38 H 1.09000 * 109.58299 * 113.79831 * 19 18 16 39 39 H 1.09001 * 109.58147 * 353.37653 * 19 18 16 40 40 H 1.09006 * 109.49239 * 185.41453 * 20 19 18 41 41 H 1.09000 * 109.52622 * 65.33580 * 20 19 18 42 42 H 1.09003 * 109.46529 * 301.35012 * 21 20 19 43 43 H 1.08997 * 109.45270 * 181.37842 * 21 20 19 44 44 H 1.07995 * 125.99140 * 180.02562 * 26 25 24 45 45 H 1.07993 * 126.59653 * 179.69717 * 27 26 25 46 46 H 1.08997 * 109.59274 * 6.62524 * 30 18 16 47 47 H 1.09000 * 109.58472 * 246.19577 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0554 -1.2306 -0.2629 9 6 1.3436 -2.4121 0.3426 10 6 0.2102 -2.3815 1.1764 11 6 -0.4250 -3.5561 1.5082 12 6 0.0440 -4.7660 1.0195 13 6 1.1560 -4.8075 0.1931 14 6 1.8071 -3.6451 -0.1519 15 6 3.0156 -3.6933 -1.0511 16 6 4.2662 -3.7191 -0.2107 17 8 4.1843 -3.7006 0.9992 18 7 5.4758 -3.7626 -0.8037 19 6 5.5911 -3.7849 -2.2683 20 6 6.4531 -4.9836 -2.6767 21 6 7.7937 -4.9170 -1.9417 22 6 7.5535 -4.9870 -0.4319 23 1 7.0297 -5.9116 -0.1894 24 6 8.8761 -4.9539 0.2899 25 7 9.5481 -5.9969 0.6945 26 6 10.6754 -5.5904 1.2968 27 6 10.7003 -4.2441 1.2695 28 7 9.5619 -3.8401 0.6256 29 1 9.2952 -2.9245 0.4480 30 6 6.7041 -3.7876 0.0022 31 1 -0.4851 0.8400 -0.0004 32 1 -0.1570 -1.4401 1.5575 33 1 -1.2922 -3.5355 2.1516 34 1 -0.4611 -5.6830 1.2848 35 1 1.5129 -5.7555 -0.1815 36 1 3.0268 -2.8118 -1.6922 37 1 2.9738 -4.5908 -1.6680 38 1 6.0606 -2.8631 -2.6118 39 1 4.5998 -3.8796 -2.7114 40 1 6.6264 -4.9572 -3.7526 41 1 5.9394 -5.9082 -2.4136 42 1 8.2960 -3.9811 -2.1865 43 1 8.4183 -5.7556 -2.2493 44 1 11.4290 -6.2302 1.7313 45 1 11.4711 -3.6060 1.6756 46 1 6.4472 -3.8842 1.0570 47 1 7.2642 -2.8661 -0.1568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777383401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:27 Heat of formation + Delta-G solvation = 33.893832 kcal Electronic energy + Delta-G solvation = -29232.200569 eV Core-core repulsion = 25379.902544 eV Total energy + Delta-G solvation = -3852.298025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28499 -39.88511 -37.83059 -36.80757 -33.61361 -33.41895 -32.68839 -31.88689 -31.45675 -29.44720 -28.67579 -27.01587 -25.35609 -24.74350 -23.72002 -21.85970 -21.34720 -20.91431 -20.52916 -19.78991 -18.58139 -18.01654 -17.14173 -16.68135 -15.73260 -15.40293 -15.26596 -15.02139 -14.77460 -14.45378 -14.26814 -14.03542 -13.85144 -13.72934 -13.59388 -13.48322 -12.95068 -12.71465 -12.57558 -12.50999 -11.71052 -11.59042 -11.52768 -11.25512 -11.16085 -11.07282 -10.98997 -10.91506 -10.85138 -10.66570 -10.38737 -10.20598 -10.19264 -9.47016 -9.35049 -9.18772 -9.15446 -8.63965 -8.40194 -7.29526 -7.27819 -6.73064 -4.33697 1.86092 2.76480 2.90715 2.92891 2.98307 3.05847 3.10251 3.24879 3.26833 3.31104 3.92775 4.16726 4.56058 4.59093 4.67065 4.75832 4.90696 4.94962 5.06221 5.19065 5.27642 5.34211 5.40860 5.48014 5.59164 5.67824 5.75300 5.80969 5.83373 5.88605 5.93945 6.01405 6.11843 6.13097 6.30063 6.42457 6.52814 6.55399 6.68874 6.81582 7.09248 7.14996 7.31094 7.43740 7.63044 7.73773 7.92564 7.94457 8.08261 8.14793 8.32628 8.65618 8.77631 8.92602 9.02821 10.21105 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.003160 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.972705 B = 8859.715684 C = 9743.775087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.456 4.456 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.238 4.238 13 C -0.081 4.081 14 C -0.182 4.182 15 C -0.068 4.068 16 C 0.520 3.480 17 O -0.517 6.517 18 N -0.624 5.624 19 C 0.106 3.894 20 C -0.135 4.135 21 C -0.107 4.107 22 C -0.018 4.018 23 H 0.107 0.893 24 C 0.225 3.775 25 N -0.489 5.489 26 C -0.029 4.029 27 C -0.059 4.059 28 N -0.565 5.565 29 H 0.419 0.581 30 C 0.118 3.882 31 H 0.279 0.721 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.169 0.831 45 H 0.176 0.824 46 H 0.097 0.903 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.862 -3.930 -5.767 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.126 3.874 10 C -0.178 4.178 11 C -0.126 4.126 12 C -0.258 4.258 13 C -0.099 4.099 14 C -0.184 4.184 15 C -0.107 4.107 16 C 0.309 3.691 17 O -0.390 6.390 18 N -0.361 5.361 19 C -0.017 4.017 20 C -0.173 4.173 21 C -0.146 4.146 22 C -0.039 4.039 23 H 0.125 0.875 24 C -0.040 4.040 25 N -0.208 5.208 26 C -0.177 4.177 27 C -0.193 4.193 28 N -0.168 5.168 29 H 0.257 0.743 30 C -0.006 4.006 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.186 0.814 45 H 0.193 0.807 46 H 0.115 0.885 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.373 -4.601 -5.180 17.778 hybrid contribution 0.738 2.110 0.125 2.239 sum 17.111 -2.491 -5.055 18.015 Atomic orbital electron populations 1.69826 1.07436 1.28911 1.35921 1.25869 0.94684 1.01070 0.92414 0.86365 0.80949 0.81449 0.78559 1.18660 1.20026 1.19730 1.19481 0.97108 0.90955 1.41050 0.90861 1.17339 0.90772 0.91278 0.87983 1.21299 0.98991 0.96668 1.00885 1.20682 0.98678 0.93470 0.99729 1.20312 1.01544 0.96166 1.07752 1.20302 0.95927 0.95535 0.98166 1.19067 0.99334 0.94046 1.05905 1.20286 0.90344 1.02629 0.97461 1.21328 0.84024 0.74444 0.89267 1.90681 1.86160 1.47404 1.14759 1.48179 1.05374 1.76189 1.06348 1.21748 1.01687 0.97945 0.80327 1.21945 0.95613 0.99422 1.00309 1.21546 0.97798 1.02519 0.92729 1.20062 0.87904 1.01744 0.94209 0.87520 1.23063 0.96992 0.81538 1.02415 1.70247 1.06103 1.29114 1.15352 1.22352 0.97852 0.92646 1.04880 1.22762 0.92994 0.97481 1.06050 1.43311 1.18356 1.10183 1.44946 0.74293 1.21405 0.85659 0.95467 0.98074 0.91041 0.86530 0.89587 0.89647 0.89744 0.88553 0.90521 0.91587 0.88837 0.90285 0.90887 0.91942 0.90964 0.81370 0.80682 0.88513 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.41 10.95 55.55 0.61 -19.80 16 2 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 3 Si 0.90 18.67 29.59 -169.99 -5.03 13.64 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -11.90 8.14 -37.74 -0.31 -12.20 16 8 H 0.07 1.86 6.67 -52.49 -0.35 1.51 16 9 C 0.13 3.42 5.56 -106.82 -0.59 2.83 16 10 C -0.16 -4.26 8.69 -38.87 -0.34 -4.60 16 11 C -0.11 -2.63 10.02 -39.66 -0.40 -3.02 16 12 C -0.24 -5.58 10.05 -39.29 -0.39 -5.97 16 13 C -0.08 -1.87 9.66 -39.66 -0.38 -2.25 16 14 C -0.18 -4.34 4.43 -103.91 -0.46 -4.80 16 15 C -0.07 -1.30 3.53 -29.04 -0.10 -1.40 16 16 C 0.52 9.99 7.31 -10.99 -0.08 9.91 16 17 O -0.52 -12.31 15.45 5.56 0.09 -12.22 16 18 N -0.62 -8.97 2.97 -172.73 -0.51 -9.49 16 19 C 0.11 1.12 6.34 -3.71 -0.02 1.09 16 20 C -0.13 -1.15 6.08 -26.62 -0.16 -1.31 16 21 C -0.11 -0.96 5.15 -26.69 -0.14 -1.10 16 22 C -0.02 -0.20 2.81 -91.62 -0.26 -0.46 16 23 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 24 C 0.22 2.65 6.88 -155.41 -1.07 1.58 16 25 N -0.49 -6.64 11.25 -10.81 -0.12 -6.76 16 26 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 27 C -0.06 -0.52 12.04 -16.56 -0.20 -0.72 16 28 N -0.56 -5.26 5.91 -10.23 -0.06 -5.32 16 29 H 0.42 2.91 8.01 -40.82 -0.33 2.59 16 30 C 0.12 1.52 5.55 -3.68 -0.02 1.50 16 31 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 32 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 33 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 34 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.10 1.81 6.88 -51.93 -0.36 1.45 16 37 H 0.08 1.23 7.60 -51.93 -0.39 0.83 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 46 H 0.10 1.52 7.01 -51.93 -0.36 1.15 16 47 H 0.05 0.59 7.19 -51.93 -0.37 0.22 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -33.22 379.63 -11.12 -44.35 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.58 Total: 9.52 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -5.23 Total: -19.63 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.09 Total: -41.37 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.22 -11.12 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777383401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.240 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds