Wall clock time and date at job start Tue Mar 31 2020 22:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46966 * 300.00120 * 3 2 1 6 6 H 1.48498 * 109.47208 * 59.99643 * 3 2 1 7 7 C 1.39944 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99862 * 163.70890 * 7 2 1 9 9 C 1.41405 * 120.00080 * 343.70253 * 7 2 1 10 10 C 1.40735 * 120.24311 * 334.19584 * 9 7 2 11 11 C 1.37597 * 119.73941 * 180.27079 * 10 9 7 12 12 C 1.38657 * 120.25043 * 359.71066 * 11 10 9 13 13 C 1.38608 * 120.50342 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24652 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.12679 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47097 * 264.99824 * 15 14 13 17 17 O 1.21280 * 119.99986 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99989 * 180.02562 * 16 15 14 19 19 C 1.46925 * 120.63143 * 0.02562 * 18 16 15 20 20 C 1.53191 * 108.77208 * 233.58686 * 19 18 16 21 21 C 1.53032 * 109.31738 * 305.36187 * 20 19 18 22 22 C 1.53046 * 109.53445 * 61.37105 * 21 20 19 23 23 H 1.08993 * 109.49633 * 58.61787 * 22 21 20 24 24 C 1.50704 * 109.49586 * 178.68377 * 22 21 20 25 25 N 1.30500 * 125.65000 * 264.97131 * 24 22 21 26 26 C 1.34124 * 109.25627 * 180.02562 * 25 24 22 27 27 C 1.34675 * 108.02357 * 0.26655 * 26 25 24 28 28 N 1.35045 * 125.64999 * 85.00050 * 24 22 21 29 29 H 0.97003 * 126.39439 * 0.02562 * 28 24 22 30 30 C 1.46930 * 120.62737 * 179.97438 * 18 16 15 31 31 H 0.96999 * 120.00465 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.12569 * 0.02562 * 10 9 7 33 33 H 1.08005 * 119.87137 * 179.72024 * 11 10 9 34 34 H 1.07998 * 119.74616 * 180.02562 * 12 11 10 35 35 H 1.07998 * 119.88110 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47055 * 145.00249 * 15 14 13 37 37 H 1.08995 * 109.47064 * 25.00023 * 15 14 13 38 38 H 1.09000 * 109.58299 * 113.79831 * 19 18 16 39 39 H 1.09001 * 109.58147 * 353.37653 * 19 18 16 40 40 H 1.09006 * 109.49239 * 185.41453 * 20 19 18 41 41 H 1.09000 * 109.52622 * 65.33580 * 20 19 18 42 42 H 1.09003 * 109.46529 * 301.35012 * 21 20 19 43 43 H 1.08997 * 109.45270 * 181.37842 * 21 20 19 44 44 H 1.07995 * 125.99140 * 180.02562 * 26 25 24 45 45 H 1.07993 * 126.59653 * 179.69717 * 27 26 25 46 46 H 1.08997 * 109.59274 * 6.62524 * 30 18 16 47 47 H 1.09000 * 109.58472 * 246.19577 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0554 -1.2306 -0.2629 9 6 1.3436 -2.4121 0.3426 10 6 0.2102 -2.3815 1.1764 11 6 -0.4250 -3.5561 1.5082 12 6 0.0440 -4.7660 1.0195 13 6 1.1560 -4.8075 0.1931 14 6 1.8071 -3.6451 -0.1519 15 6 3.0156 -3.6933 -1.0511 16 6 4.2662 -3.7191 -0.2107 17 8 4.1843 -3.7006 0.9992 18 7 5.4758 -3.7626 -0.8037 19 6 5.5911 -3.7849 -2.2683 20 6 6.4531 -4.9836 -2.6767 21 6 7.7937 -4.9170 -1.9417 22 6 7.5535 -4.9870 -0.4319 23 1 7.0297 -5.9116 -0.1894 24 6 8.8761 -4.9539 0.2899 25 7 9.5481 -5.9969 0.6945 26 6 10.6754 -5.5904 1.2968 27 6 10.7003 -4.2441 1.2695 28 7 9.5619 -3.8401 0.6256 29 1 9.2952 -2.9245 0.4480 30 6 6.7041 -3.7876 0.0022 31 1 -0.4851 0.8400 -0.0004 32 1 -0.1570 -1.4401 1.5575 33 1 -1.2922 -3.5355 2.1516 34 1 -0.4611 -5.6830 1.2848 35 1 1.5129 -5.7555 -0.1815 36 1 3.0268 -2.8118 -1.6922 37 1 2.9738 -4.5908 -1.6680 38 1 6.0606 -2.8631 -2.6118 39 1 4.5998 -3.8796 -2.7114 40 1 6.6264 -4.9572 -3.7526 41 1 5.9394 -5.9082 -2.4136 42 1 8.2960 -3.9811 -2.1865 43 1 8.4183 -5.7556 -2.2493 44 1 11.4290 -6.2302 1.7313 45 1 11.4711 -3.6060 1.6756 46 1 6.4472 -3.8842 1.0570 47 1 7.2642 -2.8661 -0.1568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777383401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:27 Heat of formation + Delta-G solvation = 14.885779 kcal Electronic energy + Delta-G solvation = -29233.024820 eV Core-core repulsion = 25379.902544 eV Total energy + Delta-G solvation = -3853.122276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.08213 -41.18518 -39.41912 -38.22603 -35.49364 -34.55908 -33.51706 -33.29672 -32.56955 -31.33895 -29.64542 -28.51194 -27.02066 -26.00162 -24.67919 -22.83691 -22.67821 -22.36805 -21.61460 -21.11349 -19.76811 -19.06999 -18.88338 -17.97162 -17.31322 -16.83457 -16.37601 -16.17866 -16.06604 -15.66734 -15.43556 -15.27630 -15.06662 -14.87762 -14.66538 -14.41179 -14.37469 -14.19715 -13.95839 -13.61336 -13.37392 -13.29297 -12.90111 -12.74616 -12.68307 -12.50300 -12.37329 -12.11247 -11.95962 -11.86496 -11.69309 -11.31424 -11.18205 -11.05228 -11.02924 -11.02551 -10.71479 -9.66591 -9.31818 -9.22205 -9.15458 -8.58659 -6.28627 0.98962 1.09665 1.13591 1.35750 1.49021 1.52367 1.78895 2.02470 2.16966 2.19915 2.22899 2.78823 3.32975 3.59232 3.71365 3.80362 4.01056 4.10552 4.13981 4.16249 4.28515 4.35527 4.40183 4.50834 4.54887 4.59869 4.65571 4.69774 4.71309 4.74173 4.76923 4.84533 4.98559 5.04940 5.11328 5.13550 5.18648 5.20494 5.37212 5.38740 5.55490 5.60390 5.78038 5.80488 6.04215 6.16991 6.21946 6.42445 6.44710 6.46282 6.74355 7.00030 7.11994 7.12764 7.35344 8.37998 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.003160 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.972705 B = 8859.715684 C = 9743.775087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.272 1.272 7 C -0.480 4.480 8 H 0.071 0.929 9 C 0.096 3.904 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.243 4.243 13 C -0.093 4.093 14 C -0.187 4.187 15 C -0.064 4.064 16 C 0.518 3.482 17 O -0.576 6.576 18 N -0.615 5.615 19 C 0.096 3.904 20 C -0.126 4.126 21 C -0.100 4.100 22 C -0.006 4.006 23 H 0.082 0.918 24 C 0.207 3.793 25 N -0.529 5.529 26 C -0.061 4.061 27 C -0.040 4.040 28 N -0.558 5.558 29 H 0.430 0.570 30 C 0.120 3.880 31 H 0.285 0.715 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.185 0.815 45 H 0.215 0.785 46 H 0.061 0.939 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.207 -3.515 -7.683 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.197 1.197 7 C -0.510 4.510 8 H 0.089 0.911 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.262 4.262 13 C -0.111 4.111 14 C -0.189 4.189 15 C -0.103 4.103 16 C 0.308 3.692 17 O -0.455 6.455 18 N -0.349 5.349 19 C -0.025 4.025 20 C -0.164 4.164 21 C -0.139 4.139 22 C -0.028 4.028 23 H 0.101 0.899 24 C -0.058 4.058 25 N -0.249 5.249 26 C -0.208 4.208 27 C -0.174 4.174 28 N -0.162 5.162 29 H 0.271 0.729 30 C -0.004 4.004 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.202 0.798 45 H 0.231 0.769 46 H 0.080 0.920 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.741 -4.195 -7.154 20.494 hybrid contribution 0.055 1.876 0.737 2.017 sum 18.797 -2.319 -6.417 19.997 Atomic orbital electron populations 1.69889 1.08851 1.30140 1.36434 1.26680 0.95418 1.04212 0.91579 0.85310 0.79412 0.76975 0.78942 1.18450 1.18384 1.19677 1.19621 0.97066 0.91836 1.42470 0.91056 1.17743 0.91308 0.92871 0.88695 1.21312 1.00606 0.96755 1.02711 1.20945 0.99229 0.93414 1.00034 1.20710 1.01653 0.96732 1.07150 1.20737 0.95734 0.96671 0.97918 1.19567 1.00427 0.93395 1.05501 1.20280 0.88770 1.04408 0.96882 1.21239 0.85400 0.74127 0.88388 1.90658 1.87164 1.50617 1.17024 1.48154 1.04369 1.74067 1.08290 1.22124 1.02873 1.00029 0.77495 1.21918 0.94623 0.97910 1.01984 1.21525 0.98250 1.03458 0.90635 1.19881 0.87324 0.99571 0.95994 0.89923 1.23004 0.97301 0.82144 1.03341 1.70169 1.07556 1.30637 1.16559 1.22796 0.97926 0.94167 1.05880 1.23359 0.92848 0.97279 1.03915 1.43316 1.18213 1.10286 1.44382 0.72918 1.21442 0.85345 0.97525 0.96052 0.90398 0.88532 0.87776 0.86818 0.86704 0.88228 0.87061 0.89416 0.88335 0.87204 0.91709 0.90261 0.90821 0.79834 0.76876 0.91995 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.70 10.95 21.83 0.24 -43.46 16 2 C 0.04 1.80 5.16 85.26 0.44 2.24 16 3 Si 0.97 38.51 29.59 68.60 2.03 40.54 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.48 -25.75 8.14 23.46 0.19 -25.56 16 8 H 0.07 3.71 6.67 -2.91 -0.02 3.69 16 9 C 0.10 5.28 5.56 -21.29 -0.12 5.16 16 10 C -0.19 -10.86 8.69 22.73 0.20 -10.66 16 11 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 12 C -0.24 -11.28 10.05 22.46 0.23 -11.05 16 13 C -0.09 -4.22 9.66 22.22 0.21 -4.01 16 14 C -0.19 -9.02 4.43 -19.40 -0.09 -9.10 16 15 C -0.06 -2.41 3.53 29.10 0.10 -2.31 16 16 C 0.52 19.96 7.31 87.66 0.64 20.60 16 17 O -0.58 -28.41 15.45 -3.03 -0.05 -28.45 16 18 N -0.61 -16.99 2.97 -818.79 -2.43 -19.42 16 19 C 0.10 1.74 6.34 86.36 0.55 2.29 16 20 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 21 C -0.10 -1.54 5.15 30.62 0.16 -1.38 16 22 C -0.01 -0.14 2.81 -11.44 -0.03 -0.17 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 24 C 0.21 4.70 6.88 138.13 0.95 5.65 16 25 N -0.53 -14.21 11.25 -188.13 -2.12 -16.33 16 26 C -0.06 -1.25 11.87 83.53 0.99 -0.26 16 27 C -0.04 -0.60 12.04 83.09 1.00 0.40 16 28 N -0.56 -9.28 5.91 -186.26 -1.10 -10.38 16 29 H 0.43 4.89 8.01 -92.71 -0.74 4.15 16 30 C 0.12 3.02 5.55 86.38 0.48 3.50 16 31 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 32 H 0.10 5.64 6.20 -2.91 -0.02 5.62 16 33 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 35 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 36 H 0.10 3.67 6.88 -2.39 -0.02 3.66 16 37 H 0.11 3.32 7.60 -2.39 -0.02 3.30 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.72 5.93 -2.39 -0.01 1.71 16 40 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.06 2.02 7.01 -2.39 -0.02 2.00 16 47 H 0.08 1.59 7.19 -2.39 -0.02 1.58 16 Total: -1.00 -76.90 379.63 3.14 -73.76 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.26 Total: 35.65 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 6.31 Total: -31.91 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -5.41 Total: -89.58 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -76.90 3.14 -73.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777383401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.646 kcal (2) G-P(sol) polarization free energy of solvation -76.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds