Wall clock time and date at job start Tue Mar 31 2020 22:21:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86801 * 119.99790 * 2 1
4 4 H 1.48507 * 109.47077 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47293 * 300.00306 * 3 2 1
6 6 H 1.48499 * 109.47052 * 60.00433 * 3 2 1
7 7 C 1.37879 * 120.00417 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00414 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99428 * 359.97438 * 7 2 1
10 10 C 1.53125 * 109.51946 * 180.02562 * 9 7 2
11 11 C 1.53044 * 109.27529 * 182.38018 * 10 9 7
12 12 N 1.46842 * 109.52514 * 59.17522 * 11 10 9
13 13 C 1.46895 * 110.99951 * 174.15897 * 12 11 10
14 14 N 1.46499 * 109.47507 * 155.00362 * 13 12 11
15 15 N 1.28393 * 119.10273 * 285.02285 * 14 13 12
16 16 C 1.31221 * 122.29635 * 179.97438 * 15 14 13
17 17 C 1.48355 * 119.87624 * 180.02562 * 16 15 14
18 18 C 1.39350 * 120.12388 * 179.72799 * 17 16 15
19 19 C 1.38017 * 119.87469 * 179.69665 * 18 17 16
20 20 C 1.38317 * 120.12039 * 0.60068 * 19 18 17
21 21 C 1.38326 * 120.25010 * 359.67435 * 20 19 18
22 22 C 1.38010 * 120.12301 * 0.02562 * 21 20 19
23 23 C 1.41453 * 120.24787 * 359.75436 * 16 15 14
24 24 C 1.36361 * 118.24776 * 0.47201 * 23 16 15
25 25 C 1.34611 * 119.11409 * 104.99731 * 14 13 12
26 26 O 1.22046 * 120.24319 * 0.02857 * 25 14 13
27 27 C 1.46850 * 111.20131 * 298.25896 * 12 11 10
28 28 C 1.53035 * 109.52390 * 61.73946 * 27 12 11
29 29 H 0.97001 * 120.00166 * 359.97438 * 1 2 3
30 30 H 1.09004 * 109.52499 * 300.12612 * 9 7 2
31 31 H 1.08997 * 109.50735 * 62.43683 * 10 9 7
32 32 H 1.08998 * 109.49957 * 302.31259 * 10 9 7
33 33 H 1.09000 * 109.45951 * 299.15893 * 11 10 9
34 34 H 1.09000 * 109.45105 * 179.18596 * 11 10 9
35 35 H 1.09000 * 109.47409 * 34.99800 * 13 12 11
36 36 H 1.09005 * 109.47436 * 275.00417 * 13 12 11
37 37 H 1.08006 * 120.06405 * 359.97438 * 18 17 16
38 38 H 1.08003 * 119.93996 * 180.31961 * 19 18 17
39 39 H 1.08001 * 119.87344 * 179.69653 * 20 19 18
40 40 H 1.07999 * 119.93641 * 180.02562 * 21 20 19
41 41 H 1.08004 * 120.06100 * 180.02562 * 22 21 20
42 42 H 1.07999 * 120.87474 * 180.25985 * 23 16 15
43 43 H 1.08002 * 121.04869 * 179.81799 * 24 23 16
44 44 H 1.08996 * 109.46007 * 181.75690 * 27 12 11
45 45 H 1.08998 * 109.45704 * 301.72561 * 27 12 11
46 46 H 1.08998 * 109.50607 * 180.88235 * 28 27 12
47 47 H 1.09006 * 109.50051 * 60.76374 * 28 27 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8903 2.3964 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2451 -3.6639 -0.0005
11 6 1.4751 -4.9852 -0.0605
12 7 0.6533 -5.0195 -1.2769
13 6 0.0070 -6.3286 -1.4388
14 7 -1.2069 -6.1777 -2.2450
15 7 -2.2505 -5.6546 -1.7106
16 6 -3.3702 -5.4893 -2.3745
17 6 -4.5438 -4.8780 -1.7037
18 6 -5.7336 -4.6949 -2.4055
19 6 -6.8242 -4.1314 -1.7746
20 6 -6.7338 -3.7375 -0.4518
21 6 -5.5534 -3.9117 0.2481
22 6 -4.4585 -4.4796 -0.3710
23 6 -3.4607 -5.8865 -3.7291
24 6 -2.3633 -6.4485 -4.3115
25 6 -1.1978 -6.5908 -3.5262
26 8 -0.1899 -7.0843 -4.0058
27 6 -0.3405 -3.9383 -1.2771
28 6 0.3752 -2.5858 -1.2535
29 1 -0.4850 0.8400 0.0004
30 1 0.6227 -2.5570 0.8883
31 1 2.8430 -3.6321 0.9103
32 1 2.8990 -3.5841 -0.8689
33 1 0.8316 -5.0705 0.8151
34 1 2.1805 -5.8160 -0.0753
35 1 -0.2549 -6.7282 -0.4591
36 1 0.6924 -7.0130 -1.9388
37 1 -5.8037 -4.9973 -3.4400
38 1 -7.7485 -3.9937 -2.3160
39 1 -7.5881 -3.2925 0.0366
40 1 -5.4886 -3.6026 1.2809
41 1 -3.5375 -4.6155 0.1765
42 1 -4.3759 -5.7513 -4.2863
43 1 -2.3832 -6.7708 -5.3422
44 1 -0.9538 -4.0090 -2.1754
45 1 -0.9755 -4.0287 -0.3958
46 1 -0.3628 -1.7838 -1.2378
47 1 0.9998 -2.4891 -2.1415
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000781573003.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:21:29
Heat of formation + Delta-G solvation = 77.296921 kcal
Electronic energy + Delta-G solvation = -29707.216045 eV
Core-core repulsion = 25856.800119 eV
Total energy + Delta-G solvation = -3850.415925 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.20093 -39.30224 -38.22468 -37.61083 -35.26451 -33.44751 -32.25111 -31.40220
-30.97506 -29.90739 -29.74664 -27.06576 -25.33359 -24.59998 -23.69409 -22.35005
-22.17164 -21.92450 -21.20494 -18.68924 -18.20783 -17.89448 -17.03033 -16.69755
-16.58536 -16.23163 -15.33274 -14.82282 -14.80373 -14.43858 -14.38862 -14.05017
-13.76416 -13.69362 -13.49750 -13.40492 -13.04770 -12.97287 -12.70287 -12.31995
-12.25950 -12.08650 -11.64886 -11.45731 -11.31606 -11.07393 -10.97958 -10.73340
-10.71003 -10.45928 -10.23194 -10.03703 -9.69677 -9.47951 -9.37907 -9.04620
-8.99357 -8.71064 -8.30666 -8.20933 -7.79264 -5.97048 -4.02255 0.37965
0.80383 1.31207 1.95216 2.16623 3.29256 3.30669 3.38838 3.43086
3.82357 3.85155 4.30330 4.33336 4.45811 4.47610 4.64851 4.85468
4.88313 5.02722 5.13415 5.31427 5.33268 5.38369 5.43141 5.48370
5.53299 5.61481 5.75019 5.76928 5.79898 5.91556 5.98280 6.02537
6.20679 6.23740 6.32730 6.43418 6.44591 6.55814 6.59176 6.81603
6.83788 7.01295 7.07758 7.34025 7.49876 7.54329 7.60851 7.79835
8.02691 8.12924 8.14458 8.47814 9.01341 9.62232 11.09140
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.009163 B = 0.003988 C = 0.003079
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3055.106986 B = 7018.714529 C = 9093.011913
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.061 3.939
3 Si 0.889 3.111
4 H -0.273 1.273
5 H -0.285 1.285
6 H -0.285 1.285
7 C -0.510 4.510
8 H 0.055 0.945
9 C 0.049 3.951
10 C -0.105 4.105
11 C 0.063 3.937
12 N -0.542 5.542
13 C 0.279 3.721
14 N -0.339 5.339
15 N -0.197 5.197
16 C 0.089 3.911
17 C -0.027 4.027
18 C -0.104 4.104
19 C -0.122 4.122
20 C -0.112 4.112
21 C -0.117 4.117
22 C -0.081 4.081
23 C -0.059 4.059
24 C -0.188 4.188
25 C 0.483 3.517
26 O -0.527 6.527
27 C 0.063 3.937
28 C -0.103 4.103
29 H 0.258 0.742
30 H 0.022 0.978
31 H 0.054 0.946
32 H 0.058 0.942
33 H 0.031 0.969
34 H 0.063 0.937
35 H 0.065 0.935
36 H 0.121 0.879
37 H 0.126 0.874
38 H 0.125 0.875
39 H 0.122 0.878
40 H 0.127 0.873
41 H 0.133 0.867
42 H 0.152 0.848
43 H 0.164 0.836
44 H 0.045 0.955
45 H 0.036 0.964
46 H 0.093 0.907
47 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.721 -12.762 -3.386 19.775
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.140 4.140
3 Si 0.717 3.283
4 H -0.198 1.198
5 H -0.211 1.211
6 H -0.211 1.211
7 C -0.548 4.548
8 H 0.073 0.927
9 C 0.030 3.970
10 C -0.143 4.143
11 C -0.065 4.065
12 N -0.270 5.270
13 C 0.070 3.930
14 N -0.159 5.159
15 N -0.021 5.021
16 C -0.079 4.079
17 C -0.029 4.029
18 C -0.124 4.124
19 C -0.140 4.140
20 C -0.131 4.131
21 C -0.135 4.135
22 C -0.100 4.100
23 C -0.082 4.082
24 C -0.217 4.217
25 C 0.280 3.720
26 O -0.404 6.404
27 C -0.064 4.064
28 C -0.141 4.141
29 H 0.068 0.932
30 H 0.040 0.960
31 H 0.073 0.927
32 H 0.077 0.923
33 H 0.049 0.951
34 H 0.081 0.919
35 H 0.083 0.917
36 H 0.138 0.862
37 H 0.143 0.857
38 H 0.143 0.857
39 H 0.140 0.860
40 H 0.145 0.855
41 H 0.151 0.849
42 H 0.169 0.831
43 H 0.181 0.819
44 H 0.063 0.937
45 H 0.054 0.946
46 H 0.112 0.888
47 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -13.426 -12.788 -3.247 18.824
hybrid contribution -0.378 0.766 -0.233 0.885
sum -13.804 -12.022 -3.479 18.633
Atomic orbital electron populations
1.69883 1.05850 1.26180 1.51099 1.24962 0.94828 0.98998 0.95169
0.86589 0.80231 0.84007 0.77493 1.19808 1.21106 1.21110 1.21231
0.92930 0.90595 1.50067 0.92661 1.18688 0.92634 0.91823 0.93845
1.21681 0.98728 0.93301 1.00621 1.22172 0.95664 1.00083 0.88544
1.62552 1.23687 1.01174 1.39603 1.22776 0.81186 0.95112 0.93928
1.46730 1.10168 1.47289 1.11689 1.71074 0.94228 1.06317 1.30451
1.20135 0.91726 1.03879 0.92142 1.18046 0.90686 1.00267 0.93906
1.21090 0.92075 0.99565 0.99637 1.21010 0.98381 0.99491 0.95111
1.21268 0.97953 0.99184 0.94692 1.21177 0.92916 0.98983 1.00453
1.21330 0.99065 0.95931 0.93704 1.22312 0.99681 0.92348 0.93893
1.22675 0.92223 1.04434 1.02401 1.18015 0.90714 0.81220 0.82005
1.90976 1.34222 1.45088 1.70129 1.22339 0.92670 0.92511 0.98871
1.21687 1.00174 0.92784 0.99452 0.93171 0.96016 0.92713 0.92302
0.95081 0.91878 0.91697 0.86166 0.85651 0.85724 0.85956 0.85536
0.84863 0.83053 0.81871 0.93686 0.94553 0.88843 0.94072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.40 11.37 55.43 0.63 -24.77 16
2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16
3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16
4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
7 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16
8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16
9 C 0.05 1.21 2.16 -91.64 -0.20 1.01 16
10 C -0.11 -2.21 5.32 -26.64 -0.14 -2.35 16
11 C 0.06 1.11 5.29 -3.83 -0.02 1.09 16
12 N -0.54 -10.09 4.91 -238.58 -1.17 -11.26 16
13 C 0.28 4.40 6.32 -63.32 -0.40 4.00 16
14 N -0.34 -5.34 2.40 -66.34 -0.16 -5.50 16
15 N -0.20 -2.95 7.12 33.47 0.24 -2.71 16
16 C 0.09 1.14 6.82 -82.74 -0.56 0.57 16
17 C -0.03 -0.32 5.88 -104.90 -0.62 -0.94 16
18 C -0.10 -0.96 9.43 -39.25 -0.37 -1.33 16
19 C -0.12 -1.04 10.03 -39.63 -0.40 -1.44 16
20 C -0.11 -1.03 10.04 -39.52 -0.40 -1.43 16
21 C -0.12 -1.26 10.03 -39.63 -0.40 -1.66 16
22 C -0.08 -1.01 9.57 -39.25 -0.38 -1.38 16
23 C -0.06 -0.61 9.50 -39.03 -0.37 -0.98 16
24 C -0.19 -2.24 10.12 -39.11 -0.40 -2.64 16
25 C 0.48 7.68 7.47 -15.19 -0.11 7.57 16
26 O -0.53 -9.86 16.44 4.88 0.08 -9.78 16
27 C 0.06 1.30 4.15 -3.83 -0.02 1.28 16
28 C -0.10 -2.50 5.12 -26.65 -0.14 -2.63 16
29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16
32 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16
33 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16
35 H 0.07 0.90 7.86 -51.93 -0.41 0.50 16
36 H 0.12 1.86 6.97 -51.93 -0.36 1.50 16
37 H 0.13 0.81 6.22 -52.48 -0.33 0.48 16
38 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16
39 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16
40 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16
41 H 0.13 1.80 7.55 -52.48 -0.40 1.40 16
42 H 0.15 0.95 6.29 -52.49 -0.33 0.62 16
43 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16
44 H 0.04 0.93 6.08 -51.93 -0.32 0.61 16
45 H 0.04 0.76 7.76 -51.93 -0.40 0.35 16
46 H 0.09 2.53 6.18 -51.93 -0.32 2.21 16
47 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16
LS Contribution 376.23 15.07 5.67 5.67
Total: -1.00 -32.23 376.23 -11.66 -43.90
By element:
Atomic # 1 Polarization: 8.68 SS G_CDS: -6.63 Total: 2.05 kcal
Atomic # 6 Polarization: -8.70 SS G_CDS: -5.30 Total: -14.00 kcal
Atomic # 7 Polarization: -43.78 SS G_CDS: -0.46 Total: -44.24 kcal
Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -32.23 -11.66 -43.90 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000781573003.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.193 kcal
(2) G-P(sol) polarization free energy of solvation -32.232 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.960 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds