Wall clock time and date at job start Tue Mar 31 2020 22:21:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86801 * 119.99790 * 2 1
4 4 H 1.48507 * 109.47077 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47293 * 300.00306 * 3 2 1
6 6 H 1.48499 * 109.47052 * 60.00433 * 3 2 1
7 7 C 1.37879 * 120.00417 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00414 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99428 * 359.97438 * 7 2 1
10 10 C 1.53125 * 109.51946 * 180.02562 * 9 7 2
11 11 C 1.53044 * 109.27529 * 182.38018 * 10 9 7
12 12 N 1.46842 * 109.52514 * 59.17522 * 11 10 9
13 13 C 1.46895 * 110.99951 * 174.15897 * 12 11 10
14 14 N 1.46499 * 109.47507 * 155.00362 * 13 12 11
15 15 N 1.28393 * 119.10273 * 285.02285 * 14 13 12
16 16 C 1.31221 * 122.29635 * 179.97438 * 15 14 13
17 17 C 1.48355 * 119.87624 * 180.02562 * 16 15 14
18 18 C 1.39350 * 120.12388 * 179.72799 * 17 16 15
19 19 C 1.38017 * 119.87469 * 179.69665 * 18 17 16
20 20 C 1.38317 * 120.12039 * 0.60068 * 19 18 17
21 21 C 1.38326 * 120.25010 * 359.67435 * 20 19 18
22 22 C 1.38010 * 120.12301 * 0.02562 * 21 20 19
23 23 C 1.41453 * 120.24787 * 359.75436 * 16 15 14
24 24 C 1.36361 * 118.24776 * 0.47201 * 23 16 15
25 25 C 1.34611 * 119.11409 * 104.99731 * 14 13 12
26 26 O 1.22046 * 120.24319 * 0.02857 * 25 14 13
27 27 C 1.46850 * 111.20131 * 298.25896 * 12 11 10
28 28 C 1.53035 * 109.52390 * 61.73946 * 27 12 11
29 29 H 0.97001 * 120.00166 * 359.97438 * 1 2 3
30 30 H 1.09004 * 109.52499 * 300.12612 * 9 7 2
31 31 H 1.08997 * 109.50735 * 62.43683 * 10 9 7
32 32 H 1.08998 * 109.49957 * 302.31259 * 10 9 7
33 33 H 1.09000 * 109.45951 * 299.15893 * 11 10 9
34 34 H 1.09000 * 109.45105 * 179.18596 * 11 10 9
35 35 H 1.09000 * 109.47409 * 34.99800 * 13 12 11
36 36 H 1.09005 * 109.47436 * 275.00417 * 13 12 11
37 37 H 1.08006 * 120.06405 * 359.97438 * 18 17 16
38 38 H 1.08003 * 119.93996 * 180.31961 * 19 18 17
39 39 H 1.08001 * 119.87344 * 179.69653 * 20 19 18
40 40 H 1.07999 * 119.93641 * 180.02562 * 21 20 19
41 41 H 1.08004 * 120.06100 * 180.02562 * 22 21 20
42 42 H 1.07999 * 120.87474 * 180.25985 * 23 16 15
43 43 H 1.08002 * 121.04869 * 179.81799 * 24 23 16
44 44 H 1.08996 * 109.46007 * 181.75690 * 27 12 11
45 45 H 1.08998 * 109.45704 * 301.72561 * 27 12 11
46 46 H 1.08998 * 109.50607 * 180.88235 * 28 27 12
47 47 H 1.09006 * 109.50051 * 60.76374 * 28 27 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8903 2.3964 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2451 -3.6639 -0.0005
11 6 1.4751 -4.9852 -0.0605
12 7 0.6533 -5.0195 -1.2769
13 6 0.0070 -6.3286 -1.4388
14 7 -1.2069 -6.1777 -2.2450
15 7 -2.2505 -5.6546 -1.7106
16 6 -3.3702 -5.4893 -2.3745
17 6 -4.5438 -4.8780 -1.7037
18 6 -5.7336 -4.6949 -2.4055
19 6 -6.8242 -4.1314 -1.7746
20 6 -6.7338 -3.7375 -0.4518
21 6 -5.5534 -3.9117 0.2481
22 6 -4.4585 -4.4796 -0.3710
23 6 -3.4607 -5.8865 -3.7291
24 6 -2.3633 -6.4485 -4.3115
25 6 -1.1978 -6.5908 -3.5262
26 8 -0.1899 -7.0843 -4.0058
27 6 -0.3405 -3.9383 -1.2771
28 6 0.3752 -2.5858 -1.2535
29 1 -0.4850 0.8400 0.0004
30 1 0.6227 -2.5570 0.8883
31 1 2.8430 -3.6321 0.9103
32 1 2.8990 -3.5841 -0.8689
33 1 0.8316 -5.0705 0.8151
34 1 2.1805 -5.8160 -0.0753
35 1 -0.2549 -6.7282 -0.4591
36 1 0.6924 -7.0130 -1.9388
37 1 -5.8037 -4.9973 -3.4400
38 1 -7.7485 -3.9937 -2.3160
39 1 -7.5881 -3.2925 0.0366
40 1 -5.4886 -3.6026 1.2809
41 1 -3.5375 -4.6155 0.1765
42 1 -4.3759 -5.7513 -4.2863
43 1 -2.3832 -6.7708 -5.3422
44 1 -0.9538 -4.0090 -2.1754
45 1 -0.9755 -4.0287 -0.3958
46 1 -0.3628 -1.7838 -1.2378
47 1 0.9998 -2.4891 -2.1415
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000781573003.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:21:28
Heat of formation + Delta-G solvation = 59.086696 kcal
Electronic energy + Delta-G solvation = -29708.005699 eV
Core-core repulsion = 25856.800119 eV
Total energy + Delta-G solvation = -3851.205580 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.29325 -40.17226 -39.76042 -38.74578 -36.58393 -35.10963 -33.20290 -33.07896
-31.82362 -31.60053 -30.88787 -28.52848 -26.85286 -25.68936 -24.96642 -23.91419
-23.35798 -22.94969 -22.50841 -20.46571 -19.26517 -18.93403 -18.52693 -18.09137
-17.71826 -17.54324 -16.62695 -16.26809 -16.00834 -15.66157 -15.43561 -15.28933
-15.13991 -14.93594 -14.66402 -14.56216 -14.33372 -14.24617 -14.02623 -13.87346
-13.64655 -13.49913 -13.00213 -12.90961 -12.79462 -12.48498 -12.30833 -12.14873
-12.06181 -11.97812 -11.88785 -11.72459 -11.44967 -10.87322 -10.83772 -10.67279
-10.42917 -10.29311 -9.81369 -9.45948 -9.04815 -8.10392 -6.23857 -0.56991
-0.08386 0.54527 0.99652 1.07869 1.37842 1.39868 1.51280 2.26834
2.41821 2.84230 2.88513 3.04143 3.16581 3.42249 3.66787 3.74745
3.89696 4.07324 4.09021 4.15996 4.19084 4.23598 4.31310 4.37944
4.43334 4.52854 4.57983 4.60692 4.66218 4.67490 4.76162 4.88178
4.91555 4.96254 5.01451 5.11835 5.13930 5.19901 5.24444 5.46493
5.57192 5.57558 5.62152 5.66158 5.86660 5.88189 6.03673 6.09109
6.15210 6.36484 6.46414 6.87088 7.08220 7.44050 8.94506
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.009163 B = 0.003988 C = 0.003079
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3055.106986 B = 7018.714529 C = 9093.011913
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C 0.013 3.987
3 Si 0.952 3.048
4 H -0.268 1.268
5 H -0.282 1.282
6 H -0.278 1.278
7 C -0.534 4.534
8 H 0.051 0.949
9 C 0.047 3.953
10 C -0.099 4.099
11 C 0.068 3.932
12 N -0.555 5.555
13 C 0.282 3.718
14 N -0.348 5.348
15 N -0.236 5.236
16 C 0.098 3.902
17 C -0.051 4.051
18 C -0.095 4.095
19 C -0.120 4.120
20 C -0.110 4.110
21 C -0.135 4.135
22 C -0.106 4.106
23 C -0.041 4.041
24 C -0.191 4.191
25 C 0.467 3.533
26 O -0.570 6.570
27 C 0.090 3.910
28 C -0.092 4.092
29 H 0.260 0.740
30 H -0.007 1.007
31 H 0.064 0.936
32 H 0.049 0.951
33 H 0.035 0.965
34 H 0.098 0.902
35 H 0.083 0.917
36 H 0.123 0.877
37 H 0.162 0.838
38 H 0.160 0.840
39 H 0.147 0.853
40 H 0.130 0.870
41 H 0.107 0.893
42 H 0.202 0.798
43 H 0.192 0.808
44 H 0.042 0.958
45 H 0.028 0.972
46 H 0.061 0.939
47 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.974 -13.155 -4.644 21.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.185 4.185
3 Si 0.778 3.222
4 H -0.192 1.192
5 H -0.208 1.208
6 H -0.204 1.204
7 C -0.572 4.572
8 H 0.070 0.930
9 C 0.028 3.972
10 C -0.137 4.137
11 C -0.059 4.059
12 N -0.283 5.283
13 C 0.073 3.927
14 N -0.167 5.167
15 N -0.059 5.059
16 C -0.071 4.071
17 C -0.053 4.053
18 C -0.115 4.115
19 C -0.137 4.137
20 C -0.129 4.129
21 C -0.153 4.153
22 C -0.126 4.126
23 C -0.064 4.064
24 C -0.220 4.220
25 C 0.267 3.733
26 O -0.451 6.451
27 C -0.038 4.038
28 C -0.131 4.131
29 H 0.069 0.931
30 H 0.011 0.989
31 H 0.083 0.917
32 H 0.067 0.933
33 H 0.054 0.946
34 H 0.117 0.883
35 H 0.101 0.899
36 H 0.141 0.859
37 H 0.179 0.821
38 H 0.178 0.822
39 H 0.165 0.835
40 H 0.148 0.852
41 H 0.126 0.874
42 H 0.219 0.781
43 H 0.209 0.791
44 H 0.060 0.940
45 H 0.046 0.954
46 H 0.079 0.921
47 H 0.039 0.961
Dipole moment (debyes) X Y Z Total
from point charges -15.687 -13.187 -4.482 20.978
hybrid contribution 0.134 0.939 0.204 0.970
sum -15.553 -12.249 -4.278 20.254
Atomic orbital electron populations
1.70022 1.07134 1.26980 1.51457 1.25735 0.95672 1.02332 0.94769
0.85591 0.79135 0.79846 0.77612 1.19218 1.20783 1.20365 1.21594
0.93019 0.92162 1.50388 0.93024 1.18637 0.93048 0.92861 0.92612
1.21544 0.97946 0.93520 1.00653 1.22131 0.95986 0.99318 0.88454
1.62427 1.23659 1.02075 1.40160 1.22703 0.81754 0.93192 0.95064
1.46644 1.10319 1.47958 1.11764 1.71094 0.94956 1.08427 1.31427
1.20705 0.91216 1.01829 0.93343 1.18218 0.91553 1.01661 0.93873
1.21507 0.90785 0.98147 1.01055 1.21478 0.99451 0.97978 0.94835
1.21643 0.97776 0.98169 0.95276 1.21341 0.93393 0.99491 1.01056
1.21303 0.98885 0.97721 0.94658 1.22736 1.00931 0.90113 0.92614
1.22915 0.91053 1.04756 1.03274 1.18701 0.91601 0.80841 0.82197
1.90940 1.35846 1.47454 1.70876 1.21882 0.92304 0.91312 0.98331
1.21435 0.99089 0.94287 0.98246 0.93090 0.98856 0.91707 0.93253
0.94628 0.88335 0.89889 0.85894 0.82076 0.82211 0.83487 0.85214
0.87438 0.78074 0.79085 0.93965 0.95356 0.92052 0.96140
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.00 11.37 21.45 0.24 -53.76 16
2 C 0.01 0.76 5.31 84.66 0.45 1.21 16
3 Si 0.95 44.64 29.54 68.60 2.03 46.67 16
4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
7 C -0.53 -30.38 8.56 25.60 0.22 -30.16 16
8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16
9 C 0.05 2.44 2.16 -11.46 -0.02 2.42 16
10 C -0.10 -4.20 5.32 30.65 0.16 -4.04 16
11 C 0.07 2.40 5.29 86.33 0.46 2.86 16
12 N -0.56 -21.03 4.91 -908.73 -4.46 -25.49 16
13 C 0.28 8.98 6.32 170.81 1.08 10.06 16
14 N -0.35 -11.12 2.40 -481.98 -1.16 -12.28 16
15 N -0.24 -7.20 7.12 -48.01 -0.34 -7.54 16
16 C 0.10 2.39 6.82 42.72 0.29 2.68 16
17 C -0.05 -1.14 5.88 -20.05 -0.12 -1.26 16
18 C -0.10 -1.41 9.43 22.48 0.21 -1.20 16
19 C -0.12 -1.57 10.03 22.24 0.22 -1.35 16
20 C -0.11 -1.75 10.04 22.31 0.22 -1.52 16
21 C -0.13 -2.88 10.03 22.24 0.22 -2.65 16
22 C -0.11 -2.72 9.57 22.49 0.22 -2.51 16
23 C -0.04 -0.72 9.50 22.62 0.21 -0.51 16
24 C -0.19 -4.18 10.12 22.57 0.23 -3.95 16
25 C 0.47 14.82 7.47 85.01 0.64 15.45 16
26 O -0.57 -21.68 16.44 -5.46 -0.09 -21.77 16
27 C 0.09 3.84 4.15 86.32 0.36 4.20 16
28 C -0.09 -4.72 5.12 30.65 0.16 -4.57 16
29 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16
30 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16
31 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16
32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16
33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
34 H 0.10 2.81 8.12 -2.39 -0.02 2.79 16
35 H 0.08 2.31 7.86 -2.39 -0.02 2.29 16
36 H 0.12 3.84 6.97 -2.38 -0.02 3.82 16
37 H 0.16 1.12 6.22 -2.91 -0.02 1.10 16
38 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16
39 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16
40 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16
41 H 0.11 3.21 7.55 -2.91 -0.02 3.19 16
42 H 0.20 1.38 6.29 -2.91 -0.02 1.36 16
43 H 0.19 2.99 8.06 -2.91 -0.02 2.96 16
44 H 0.04 1.82 6.08 -2.39 -0.01 1.80 16
45 H 0.03 1.25 7.76 -2.39 -0.02 1.23 16
46 H 0.06 3.52 6.18 -2.39 -0.01 3.50 16
47 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16
Total: -1.00 -74.86 376.23 2.41 -72.46
By element:
Atomic # 1 Polarization: 15.56 SS G_CDS: 0.98 Total: 16.54 kcal
Atomic # 6 Polarization: -20.04 SS G_CDS: 5.21 Total: -14.83 kcal
Atomic # 7 Polarization: -93.35 SS G_CDS: -5.71 Total: -99.06 kcal
Atomic # 8 Polarization: -21.68 SS G_CDS: -0.09 Total: -21.77 kcal
Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal
Total: -74.86 2.41 -72.46 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000781573003.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.544 kcal
(2) G-P(sol) polarization free energy of solvation -74.863 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.087 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds