Wall clock time and date at job start Tue Mar 31 2020 22:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47121 * 180.02562 * 19 18 16 21 21 C 1.34861 * 126.65732 * 95.02139 * 20 19 18 22 22 N 1.34285 * 108.07341 * 179.97438 * 21 20 19 23 23 C 1.30098 * 109.21100 * 359.97438 * 22 21 20 24 24 N 1.35416 * 108.62737 * 359.80408 * 23 22 21 25 25 C 1.46484 * 124.82050 * 179.46332 * 24 23 22 26 26 C 1.53261 * 108.86072 * 343.45246 * 25 24 23 27 27 C 1.53153 * 109.49654 * 50.13918 * 26 25 24 28 28 C 1.51040 * 127.38706 * 180.02562 * 23 22 21 29 29 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 30 30 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 32 32 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 35 35 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 36 36 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 37 37 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 38 38 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 39 39 H 1.08004 * 125.95984 * 359.97438 * 21 20 19 40 40 H 1.08997 * 109.74152 * 223.51854 * 25 24 23 41 41 H 1.09004 * 109.35416 * 103.14809 * 25 24 23 42 42 H 1.09008 * 109.47067 * 290.13197 * 26 25 24 43 43 H 1.09006 * 109.46865 * 170.14790 * 26 25 24 44 44 H 1.09004 * 109.51068 * 170.57838 * 27 26 25 45 45 H 1.08994 * 109.54645 * 50.45649 * 27 26 25 46 46 H 1.09003 * 109.71223 * 283.74051 * 28 23 22 47 47 H 1.08996 * 109.72337 * 44.33883 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7535 -3.9337 -1.4314 21 6 8.4219 -2.9234 -2.0243 22 7 9.2987 -3.4560 -2.8908 23 6 9.1999 -4.7528 -2.8573 24 7 8.2488 -5.0909 -1.9546 25 6 7.8418 -6.4630 -1.6426 26 6 8.3374 -7.3921 -2.7562 27 6 9.8248 -7.1335 -3.0135 28 6 9.9921 -5.7541 -3.6642 29 1 -0.4849 -0.8357 -0.0852 30 1 0.0691 -1.3040 1.8430 31 1 -0.9698 -3.3393 2.7431 32 1 -0.2416 -5.5537 1.9556 33 1 1.5304 -5.7534 0.2610 34 1 2.7709 -4.7177 -1.4995 35 1 2.8121 -2.9465 -1.6708 36 1 5.2988 -3.9312 -2.0021 37 1 6.7917 -2.8647 0.1451 38 1 6.7498 -4.6358 0.3162 39 1 8.2773 -1.8700 -1.8351 40 1 6.7553 -6.5188 -1.5767 41 1 8.2834 -6.7636 -0.6925 42 1 7.7722 -7.1999 -3.6682 43 1 8.1962 -8.4297 -2.4533 44 1 10.2176 -7.9006 -3.6809 45 1 10.3682 -7.1595 -2.0691 46 1 9.6165 -5.7815 -4.6871 47 1 11.0454 -5.4735 -3.6667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791391717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:37 Heat of formation + Delta-G solvation = 22.293208 kcal Electronic energy + Delta-G solvation = -28698.997173 eV Core-core repulsion = 24846.196108 eV Total energy + Delta-G solvation = -3852.801065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.58919 -39.27053 -37.55149 -36.96492 -34.83056 -33.82817 -33.23768 -31.85670 -30.22588 -29.56328 -29.19111 -27.17798 -25.66470 -24.79980 -24.07450 -22.41206 -21.07387 -20.92247 -20.69181 -19.57562 -19.15419 -17.75843 -17.11607 -16.42500 -16.12347 -15.61092 -15.24865 -14.92862 -14.88775 -14.65947 -14.55815 -14.30455 -14.07396 -13.90881 -13.58042 -13.30730 -13.02184 -12.82713 -12.60213 -12.29461 -12.24696 -11.99583 -11.73808 -11.63023 -11.56848 -11.42953 -11.20016 -11.13140 -10.82976 -10.44695 -10.36070 -10.11441 -9.77372 -9.64151 -9.36920 -9.33774 -8.93528 -8.82689 -8.41400 -7.54041 -7.48735 -7.10122 -4.39861 1.70656 2.48882 2.76541 2.87112 2.94189 3.19055 3.25873 3.31900 3.40505 3.74541 3.95945 4.05354 4.11764 4.16964 4.23268 4.52743 4.61624 4.75301 4.87962 4.93836 5.06984 5.21808 5.24701 5.28430 5.35328 5.37362 5.44183 5.60631 5.65160 5.72991 5.74681 5.92117 6.06144 6.17303 6.22256 6.33718 6.37155 6.57572 6.65263 6.70241 6.96189 7.01781 7.22702 7.44025 7.68530 7.84259 7.85558 7.88758 7.92548 7.97310 8.23142 8.36679 8.76789 8.81281 8.94901 10.09670 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.002866 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.796039 B = 9767.595394 C =11373.790197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.040 3.960 3 Si 1.060 2.940 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.116 3.884 10 C -0.216 4.216 11 C -0.086 4.086 12 C -0.254 4.254 13 C -0.069 4.069 14 C -0.185 4.185 15 C -0.069 4.069 16 C 0.516 3.484 17 O -0.519 6.519 18 N -0.743 5.743 19 C 0.201 3.799 20 C -0.039 4.039 21 C -0.004 4.004 22 N -0.490 5.490 23 C 0.209 3.791 24 N -0.447 5.447 25 C 0.100 3.900 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.033 4.033 29 H 0.299 0.701 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.396 0.604 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.173 0.827 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.482 -12.601 -8.168 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.181 4.181 3 Si 0.883 3.117 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.091 0.909 9 C 0.113 3.887 10 C -0.235 4.235 11 C -0.105 4.105 12 C -0.274 4.274 13 C -0.087 4.087 14 C -0.187 4.187 15 C -0.108 4.108 16 C 0.303 3.697 17 O -0.393 6.393 18 N -0.399 5.399 19 C 0.076 3.924 20 C -0.154 4.154 21 C -0.154 4.154 22 N -0.208 5.208 23 C -0.053 4.053 24 N -0.130 5.130 25 C -0.023 4.023 26 C -0.172 4.172 27 C -0.164 4.164 28 C -0.072 4.072 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.190 0.810 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.744 -10.562 -7.629 21.217 hybrid contribution -0.424 -2.173 0.178 2.221 sum 16.320 -12.735 -7.451 22.001 Atomic orbital electron populations 1.70456 1.08203 1.34253 1.29253 1.26937 0.95663 1.04193 0.91336 0.83718 0.75762 0.74107 0.78077 1.19897 1.19991 1.20147 1.20451 1.02715 0.93998 1.37212 0.90928 1.17396 0.90199 0.91812 0.89283 1.21142 1.03563 0.96983 1.01823 1.20602 0.98284 0.93243 0.98321 1.20252 1.05011 0.95792 1.06300 1.20340 0.96176 0.95725 0.96487 1.18989 1.02738 0.93555 1.03415 1.20237 0.89764 1.02445 0.98388 1.21258 0.85707 0.74884 0.87823 1.90694 1.87155 1.46795 1.14613 1.46277 1.04953 1.77921 1.10708 1.19412 0.78866 1.03273 0.90860 1.21116 1.03677 0.85855 1.04710 1.22273 0.96574 0.99168 0.97339 1.70098 1.23379 1.05373 1.21937 1.23269 0.94405 0.92244 0.95409 1.45239 1.29568 1.06560 1.31668 1.22014 1.01787 0.78737 0.99714 1.21905 0.96907 0.99707 0.98698 1.21690 0.96020 0.96707 1.01953 1.20203 0.99464 0.90063 0.97468 0.88745 0.87747 0.89394 0.89495 0.89719 0.90758 0.88567 0.77011 0.89241 0.91430 0.80985 0.88918 0.89712 0.90470 0.89168 0.89902 0.91104 0.89245 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.25 12.32 55.55 0.68 -20.56 16 2 C 0.04 1.03 4.94 -17.34 -0.09 0.95 16 3 Si 1.06 22.14 30.00 -169.99 -5.10 17.04 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.52 -13.61 8.08 -37.74 -0.30 -13.91 16 8 H 0.07 1.88 6.73 -52.49 -0.35 1.53 16 9 C 0.12 3.08 5.30 -106.82 -0.57 2.51 16 10 C -0.22 -5.70 7.95 -38.87 -0.31 -6.01 16 11 C -0.09 -2.07 10.02 -39.66 -0.40 -2.47 16 12 C -0.25 -5.85 10.05 -39.29 -0.39 -6.25 16 13 C -0.07 -1.57 9.66 -39.66 -0.38 -1.95 16 14 C -0.19 -4.41 4.43 -103.91 -0.46 -4.87 16 15 C -0.07 -1.33 5.18 -29.03 -0.15 -1.48 16 16 C 0.52 9.84 7.46 -10.99 -0.08 9.75 16 17 O -0.52 -12.25 16.03 5.56 0.09 -12.16 16 18 N -0.74 -10.70 5.55 -61.48 -0.34 -11.04 16 19 C 0.20 2.66 5.97 -5.19 -0.03 2.63 16 20 C -0.04 -0.48 6.35 -81.80 -0.52 -1.00 16 21 C 0.00 -0.05 11.80 -17.68 -0.21 -0.26 16 22 N -0.49 -6.69 11.24 -10.62 -0.12 -6.81 16 23 C 0.21 2.31 7.65 -155.24 -1.19 1.12 16 24 N -0.45 -4.68 3.14 -109.18 -0.34 -5.02 16 25 C 0.10 0.74 6.77 -3.92 -0.03 0.72 16 26 C -0.13 -0.68 5.94 -26.52 -0.16 -0.84 16 27 C -0.13 -0.61 5.96 -26.43 -0.16 -0.76 16 28 C -0.03 -0.23 6.33 -27.49 -0.17 -0.40 16 29 H 0.30 8.14 6.68 -40.82 -0.27 7.87 16 30 H 0.10 2.84 6.49 -52.49 -0.34 2.50 16 31 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 35 H 0.10 1.87 7.06 -51.93 -0.37 1.50 16 36 H 0.40 4.88 8.46 -40.82 -0.35 4.53 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 39 H 0.17 2.04 8.06 -52.48 -0.42 1.62 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.42 8.12 -51.92 -0.42 0.00 16 43 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -32.99 386.52 -11.71 -44.70 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.81 Total: 10.56 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -5.60 Total: -22.52 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.12 Total: -43.43 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.10 Total: 17.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.99 -11.71 -44.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791391717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.993 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds