Wall clock time and date at job start Tue Mar 31 2020 22:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47121 * 180.02562 * 19 18 16 21 21 C 1.34861 * 126.65732 * 95.02139 * 20 19 18 22 22 N 1.34285 * 108.07341 * 179.97438 * 21 20 19 23 23 C 1.30098 * 109.21100 * 359.97438 * 22 21 20 24 24 N 1.35416 * 108.62737 * 359.80408 * 23 22 21 25 25 C 1.46484 * 124.82050 * 179.46332 * 24 23 22 26 26 C 1.53261 * 108.86072 * 343.45246 * 25 24 23 27 27 C 1.53153 * 109.49654 * 50.13918 * 26 25 24 28 28 C 1.51040 * 127.38706 * 180.02562 * 23 22 21 29 29 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 30 30 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 32 32 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 35 35 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 36 36 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 37 37 H 1.09001 * 109.46742 * 300.00230 * 19 18 16 38 38 H 1.08991 * 109.47271 * 60.00114 * 19 18 16 39 39 H 1.08004 * 125.95984 * 359.97438 * 21 20 19 40 40 H 1.08997 * 109.74152 * 223.51854 * 25 24 23 41 41 H 1.09004 * 109.35416 * 103.14809 * 25 24 23 42 42 H 1.09008 * 109.47067 * 290.13197 * 26 25 24 43 43 H 1.09006 * 109.46865 * 170.14790 * 26 25 24 44 44 H 1.09004 * 109.51068 * 170.57838 * 27 26 25 45 45 H 1.08994 * 109.54645 * 50.45649 * 27 26 25 46 46 H 1.09003 * 109.71223 * 283.74051 * 28 23 22 47 47 H 1.08996 * 109.72337 * 44.33883 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.7535 -3.9337 -1.4314 21 6 8.4219 -2.9234 -2.0243 22 7 9.2987 -3.4560 -2.8908 23 6 9.1999 -4.7528 -2.8573 24 7 8.2488 -5.0909 -1.9546 25 6 7.8418 -6.4630 -1.6426 26 6 8.3374 -7.3921 -2.7562 27 6 9.8248 -7.1335 -3.0135 28 6 9.9921 -5.7541 -3.6642 29 1 -0.4849 -0.8357 -0.0852 30 1 0.0691 -1.3040 1.8430 31 1 -0.9698 -3.3393 2.7431 32 1 -0.2416 -5.5537 1.9556 33 1 1.5304 -5.7534 0.2610 34 1 2.7709 -4.7177 -1.4995 35 1 2.8121 -2.9465 -1.6708 36 1 5.2988 -3.9312 -2.0021 37 1 6.7917 -2.8647 0.1451 38 1 6.7498 -4.6358 0.3162 39 1 8.2773 -1.8700 -1.8351 40 1 6.7553 -6.5188 -1.5767 41 1 8.2834 -6.7636 -0.6925 42 1 7.7722 -7.1999 -3.6682 43 1 8.1962 -8.4297 -2.4533 44 1 10.2176 -7.9006 -3.6809 45 1 10.3682 -7.1595 -2.0691 46 1 9.6165 -5.7815 -4.6871 47 1 11.0454 -5.4735 -3.6667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791391717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:36 Heat of formation + Delta-G solvation = 3.714488 kcal Electronic energy + Delta-G solvation = -28699.802807 eV Core-core repulsion = 24846.196108 eV Total energy + Delta-G solvation = -3853.606699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.44579 -40.83997 -39.33306 -37.55013 -36.09936 -35.73190 -34.11634 -33.53458 -31.16555 -31.06351 -30.39941 -28.63857 -27.04312 -26.37159 -24.83218 -23.03873 -22.82684 -22.39213 -21.91196 -21.16299 -19.85837 -19.60882 -18.25795 -17.57230 -17.11219 -16.89733 -16.73337 -16.49484 -15.88838 -15.86201 -15.52774 -15.41083 -15.24685 -15.10167 -14.81448 -14.63998 -14.19780 -13.94488 -13.88176 -13.81258 -13.71866 -13.51771 -12.98611 -12.85691 -12.75012 -12.60115 -12.24052 -12.08283 -11.99579 -11.98817 -11.87436 -11.48832 -11.21578 -11.06466 -10.94776 -10.83318 -10.57201 -10.15623 -9.46430 -9.43356 -9.33208 -9.04968 -6.39228 0.75518 0.95042 0.99505 1.47565 1.62386 1.70674 1.75913 1.76475 1.97538 2.31221 2.45874 2.72699 3.30967 3.47154 3.58573 3.60082 3.76373 3.83659 4.02296 4.06142 4.23441 4.28865 4.31529 4.37712 4.45355 4.48587 4.50863 4.55977 4.63032 4.68571 4.71700 4.82947 4.93544 4.97787 4.99562 5.08255 5.08357 5.27025 5.32405 5.33277 5.36796 5.50476 5.66400 5.80124 5.85020 5.99156 6.05788 6.17776 6.30039 6.45479 6.54740 6.86790 7.02440 7.02633 7.32682 8.09022 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.002866 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.796039 B = 9767.595394 C =11373.790197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.005 3.995 3 Si 1.105 2.895 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.085 3.915 10 C -0.246 4.246 11 C -0.097 4.097 12 C -0.251 4.251 13 C -0.079 4.079 14 C -0.189 4.189 15 C -0.068 4.068 16 C 0.521 3.479 17 O -0.570 6.570 18 N -0.720 5.720 19 C 0.209 3.791 20 C -0.044 4.044 21 C -0.021 4.021 22 N -0.527 5.527 23 C 0.212 3.788 24 N -0.444 5.444 25 C 0.090 3.910 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.035 4.035 29 H 0.284 0.716 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.174 0.826 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.998 -15.305 -9.500 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.211 4.211 3 Si 0.923 3.077 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.569 4.569 8 H 0.087 0.913 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.115 4.115 12 C -0.270 4.270 13 C -0.097 4.097 14 C -0.191 4.191 15 C -0.108 4.108 16 C 0.309 3.691 17 O -0.448 6.448 18 N -0.375 5.375 19 C 0.084 3.916 20 C -0.159 4.159 21 C -0.170 4.170 22 N -0.246 5.246 23 C -0.051 4.051 24 N -0.127 5.127 25 C -0.031 4.031 26 C -0.166 4.166 27 C -0.157 4.157 28 C -0.074 4.074 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.246 0.754 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.191 0.809 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.119 0.881 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.274 -13.308 -9.009 24.335 hybrid contribution -0.863 -1.529 0.591 1.853 sum 17.411 -14.837 -8.418 24.375 Atomic orbital electron populations 1.70555 1.08863 1.33208 1.31745 1.28185 0.95730 1.07133 0.90074 0.83152 0.74956 0.70658 0.78888 1.19442 1.19952 1.17797 1.20547 1.02699 0.94928 1.38746 0.91334 1.17786 0.90816 0.93338 0.89829 1.21149 1.05156 0.96972 1.03238 1.20900 0.98705 0.93197 0.98734 1.20719 1.04412 0.96329 1.05499 1.20805 0.95744 0.97046 0.96137 1.19482 1.03131 0.92911 1.03555 1.20257 0.88796 1.04417 0.97290 1.21086 0.86525 0.74335 0.87120 1.90679 1.87851 1.49600 1.16699 1.46013 1.04434 1.75885 1.11134 1.19299 0.78375 1.02781 0.91111 1.20812 1.03628 0.86636 1.04810 1.22445 0.97060 0.99709 0.97810 1.70092 1.24420 1.07030 1.23025 1.24061 0.93948 0.92233 0.94857 1.45419 1.29062 1.07206 1.31010 1.22329 1.01929 0.77550 1.01268 1.21935 0.96855 1.00196 0.97657 1.21695 0.95932 0.95859 1.02251 1.20449 0.99135 0.90218 0.97580 0.90373 0.89956 0.87328 0.86275 0.86109 0.86777 0.88875 0.75448 0.90460 0.91150 0.80916 0.89062 0.88976 0.90544 0.86823 0.87325 0.91328 0.88096 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.41 12.32 21.82 0.27 -45.14 16 2 C 0.00 0.26 4.94 85.25 0.42 0.68 16 3 Si 1.11 45.47 30.00 68.60 2.06 47.53 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.54 -29.44 8.08 23.46 0.19 -29.25 16 8 H 0.07 3.66 6.73 -2.91 -0.02 3.64 16 9 C 0.08 4.62 5.30 -21.29 -0.11 4.51 16 10 C -0.25 -13.43 7.95 22.73 0.18 -13.25 16 11 C -0.10 -4.68 10.02 22.22 0.22 -4.45 16 12 C -0.25 -11.05 10.05 22.46 0.23 -10.82 16 13 C -0.08 -3.44 9.66 22.22 0.21 -3.23 16 14 C -0.19 -8.91 4.43 -19.40 -0.09 -9.00 16 15 C -0.07 -2.54 5.18 29.10 0.15 -2.39 16 16 C 0.52 19.46 7.46 87.66 0.65 20.12 16 17 O -0.57 -27.03 16.03 -3.04 -0.05 -27.08 16 18 N -0.72 -19.91 5.55 -466.80 -2.59 -22.50 16 19 C 0.21 5.44 5.97 85.63 0.51 5.95 16 20 C -0.04 -1.03 6.35 41.09 0.26 -0.77 16 21 C -0.02 -0.55 11.80 83.54 0.99 0.44 16 22 N -0.53 -14.16 11.24 -187.51 -2.11 -16.26 16 23 C 0.21 4.37 7.65 138.23 1.06 5.43 16 24 N -0.44 -8.59 3.14 -499.34 -1.57 -10.16 16 25 C 0.09 1.12 6.77 86.47 0.59 1.71 16 26 C -0.13 -0.86 5.94 30.73 0.18 -0.67 16 27 C -0.12 -0.74 5.96 30.79 0.18 -0.55 16 28 C -0.04 -0.40 6.33 30.10 0.19 -0.21 16 29 H 0.28 16.30 6.68 -92.71 -0.62 15.68 16 30 H 0.08 4.74 6.49 -2.91 -0.02 4.73 16 31 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 32 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 34 H 0.11 3.29 8.05 -2.39 -0.02 3.27 16 35 H 0.09 3.56 7.06 -2.39 -0.02 3.54 16 36 H 0.41 9.34 8.46 -92.71 -0.78 8.55 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 39 H 0.17 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.56 8.12 -2.38 -0.02 0.54 16 43 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 44 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.07 0.49 8.12 -2.39 -0.02 0.47 16 46 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.55 386.52 2.39 -72.17 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.35 Total: 37.22 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 6.02 Total: -35.77 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -6.00 Total: -94.06 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.06 Total: 47.53 kcal Total: -74.55 2.39 -72.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791391717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.881 kcal (2) G-P(sol) polarization free energy of solvation -74.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds