Wall clock time and date at job start Tue Mar 31 2020 22:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39809 * 120.07313 * 324.51160 * 3 2 1 5 5 C 1.37656 * 119.92134 * 180.02562 * 4 3 2 6 6 C 1.39174 * 120.07425 * 359.97438 * 5 4 3 7 7 N 1.39183 * 119.92413 * 180.02562 * 6 5 4 8 8 C 1.48563 * 111.00270 * 126.56968 * 7 6 5 9 9 C 1.54379 * 104.59542 * 200.95639 * 8 7 6 10 10 C 1.54255 * 105.06074 * 23.85633 * 9 8 7 11 11 C 1.48562 * 110.99992 * 11.15083 * 7 6 5 12 12 H 1.09005 * 110.51084 * 40.21738 * 11 7 6 13 13 C 1.50700 * 110.41211 * 277.82037 * 11 7 6 14 14 O 1.21273 * 119.99922 * 342.38258 * 13 11 7 15 15 N 1.34778 * 119.99787 * 162.37988 * 13 11 7 16 16 C 1.46503 * 119.99976 * 174.96777 * 15 13 11 17 17 C 1.52997 * 109.47016 * 185.01205 * 16 15 13 18 18 C 1.50695 * 115.54797 * 279.54890 * 17 16 15 19 19 H 1.08003 * 119.99702 * 94.60426 * 18 17 16 20 20 C 1.37873 * 120.00369 * 274.59901 * 18 17 16 21 21 N 1.31518 * 119.99865 * 5.70197 * 20 18 17 22 22 Si 1.86800 * 120.00268 * 185.70816 * 20 18 17 23 23 H 1.48499 * 109.47568 * 89.99997 * 22 20 18 24 24 H 1.48502 * 109.46933 * 209.99792 * 22 20 18 25 25 H 1.48495 * 109.46900 * 329.99602 * 22 20 18 26 26 C 1.52998 * 117.49524 * 133.84491 * 17 16 15 27 27 C 1.52994 * 60.00194 * 252.50882 * 26 17 16 28 28 C 1.39180 * 120.15509 * 0.27472 * 6 5 4 29 29 C 1.37656 * 120.07194 * 359.45588 * 28 6 5 30 30 H 1.08000 * 120.03901 * 359.97438 * 4 3 2 31 31 H 1.07991 * 119.95810 * 179.97438 * 5 4 3 32 32 H 1.09010 * 110.40570 * 82.18475 * 8 7 6 33 33 H 1.08990 * 110.41094 * 319.74264 * 8 7 6 34 34 H 1.08995 * 110.32531 * 264.96039 * 9 8 7 35 35 H 1.09004 * 110.40792 * 142.79550 * 9 8 7 36 36 H 1.09004 * 110.32667 * 241.10299 * 10 9 8 37 37 H 1.08999 * 110.41364 * 118.93434 * 10 9 8 38 38 H 0.97001 * 119.99777 * 354.69388 * 15 13 11 39 39 H 1.08998 * 109.46740 * 305.01136 * 16 15 13 40 40 H 1.08996 * 109.46787 * 65.00681 * 16 15 13 41 41 H 0.97002 * 119.99916 * 185.00142 * 21 20 18 42 42 H 1.08996 * 117.50469 * 359.97438 * 26 17 16 43 43 H 1.09004 * 117.50018 * 145.01948 * 26 17 16 44 44 H 1.09002 * 117.49957 * 252.51389 * 27 26 17 45 45 H 1.08997 * 117.52238 * 107.47747 * 27 26 17 46 46 H 1.07997 * 119.96469 * 179.70647 * 28 6 5 47 47 H 1.07998 * 120.04031 * 180.27334 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.9842 0.7024 5 6 4.6456 -0.9803 0.7007 6 6 5.3394 0.0022 0.0004 7 7 6.7312 0.0028 0.0004 8 6 7.2637 0.0293 -1.3863 9 6 8.7058 -0.5069 -1.2595 10 6 8.7062 -1.3554 0.0286 11 6 7.2642 -1.2606 0.5720 12 1 6.6737 -2.1120 0.2334 13 6 7.2732 -1.1938 2.0775 14 8 7.1897 -0.1213 2.6373 15 7 7.3738 -2.3260 2.8017 16 6 7.4936 -2.2546 4.2600 17 6 7.7169 -3.6596 4.8228 18 6 6.4783 -4.5052 4.9700 19 1 6.1967 -5.1917 4.1851 20 6 5.7045 -4.4027 6.1065 21 7 5.9825 -3.4893 7.0111 22 14 4.2614 -5.5610 6.3617 23 1 4.7218 -6.7736 7.0848 24 1 3.2127 -4.8769 7.1601 25 1 3.7025 -5.9534 5.0430 26 6 8.8208 -3.8348 5.8677 27 6 9.0184 -4.3719 4.4488 28 6 4.6447 0.9871 -0.6956 29 6 3.2681 0.9859 -0.7027 30 1 2.7312 -1.7466 1.2463 31 1 5.1877 -1.7404 1.2434 32 1 7.2697 1.0489 -1.7717 33 1 6.6724 -0.6190 -2.0329 34 1 9.4104 0.3197 -1.1686 35 1 8.9583 -1.1257 -2.1206 36 1 9.4110 -0.9453 0.7520 37 1 8.9577 -2.3914 -0.1986 38 1 7.3630 -3.1883 2.3576 39 1 8.3385 -1.6187 4.5244 40 1 6.5788 -1.8362 4.6796 41 1 5.4847 -3.4636 7.8432 42 1 9.3881 -2.9493 6.1538 43 1 8.6512 -4.5618 6.6619 44 1 8.9787 -5.4522 4.3095 45 1 9.7152 -3.8397 3.8013 46 1 5.1862 1.7508 -1.2340 47 1 2.7296 1.7478 -1.2466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797560828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:59 Heat of formation + Delta-G solvation = 58.789508 kcal Electronic energy + Delta-G solvation = -29132.617981 eV Core-core repulsion = 25281.399514 eV Total energy + Delta-G solvation = -3851.218467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06837 -39.02919 -37.92749 -36.65039 -36.29095 -33.45526 -32.97485 -32.00721 -31.56342 -29.72436 -29.08638 -26.42877 -25.25904 -24.02473 -23.22712 -22.01266 -21.25438 -20.96061 -19.71809 -19.28809 -18.99197 -17.56540 -17.26955 -16.13829 -15.78261 -15.25556 -15.14225 -14.72632 -14.63408 -14.33897 -14.24760 -14.07065 -13.90980 -13.69886 -13.59178 -13.48903 -12.99542 -12.90160 -12.76053 -12.53200 -12.16880 -12.08673 -11.85104 -11.67395 -11.63127 -11.41534 -11.20729 -11.10477 -10.92501 -10.85711 -10.57811 -10.33720 -10.03942 -9.70600 -9.32791 -9.21241 -9.01664 -8.53236 -8.30161 -8.23677 -8.07692 -6.12697 -4.21523 0.65372 1.20059 2.61126 2.77890 2.99196 3.23109 3.24972 3.32680 3.32824 3.74093 3.83280 3.92569 4.27208 4.32445 4.36462 4.65804 4.69426 4.73114 4.86455 5.05093 5.08649 5.16006 5.16938 5.23164 5.27948 5.38256 5.39094 5.46933 5.55069 5.70753 5.77597 5.83764 5.89599 5.95223 6.01837 6.18634 6.27992 6.37063 6.40850 6.53694 6.57236 6.60839 6.80693 6.95371 7.03341 7.17173 7.38368 7.43233 7.44635 7.76949 8.15173 8.28687 8.74155 8.81379 9.46403 10.95715 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008729 B = 0.003956 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.092436 B = 7076.117560 C = 9690.623218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.263 3.737 3 C -0.068 4.068 4 C -0.033 4.033 5 C -0.166 4.166 6 C 0.145 3.855 7 N -0.440 5.440 8 C 0.038 3.962 9 C -0.123 4.123 10 C -0.113 4.113 11 C 0.038 3.962 12 H 0.088 0.912 13 C 0.508 3.492 14 O -0.525 6.525 15 N -0.709 5.709 16 C 0.165 3.835 17 C 0.029 3.971 18 C -0.501 4.501 19 H 0.060 0.940 20 C 0.074 3.926 21 N -0.873 5.873 22 Si 0.887 3.113 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.147 4.147 27 C -0.210 4.210 28 C -0.147 4.147 29 C -0.044 4.044 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.397 0.603 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.262 0.738 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.135 0.865 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 4.871 -18.967 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.052 4.052 3 C -0.072 4.072 4 C -0.055 4.055 5 C -0.187 4.187 6 C 0.045 3.955 7 N -0.153 5.153 8 C -0.086 4.086 9 C -0.161 4.161 10 C -0.152 4.152 11 C -0.073 4.073 12 H 0.105 0.895 13 C 0.292 3.708 14 O -0.401 6.401 15 N -0.359 5.359 16 C 0.043 3.957 17 C 0.028 3.972 18 C -0.538 4.538 19 H 0.078 0.922 20 C -0.130 4.130 21 N -0.508 5.508 22 Si 0.715 3.285 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.186 4.186 27 C -0.247 4.247 28 C -0.167 4.167 29 C -0.065 4.065 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.231 0.769 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.019 6.254 -18.073 19.362 hybrid contribution -0.593 -1.623 0.031 1.728 sum 2.426 4.631 -18.043 18.785 Atomic orbital electron populations 1.81233 1.12153 1.08286 1.09089 1.25720 0.92644 0.93476 0.93338 1.15944 0.84208 1.00837 1.06260 1.21056 0.93738 0.96117 0.94553 1.21246 0.94308 0.99691 1.03457 1.19309 0.88665 0.93344 0.94202 1.61778 1.04806 1.32691 1.16036 1.23258 0.95505 1.02616 0.87264 1.22326 0.96138 0.99993 0.97639 1.22261 0.94177 1.01277 0.97436 1.22926 0.97996 0.91766 0.94615 0.89478 1.19960 0.78006 0.84965 0.87903 1.90710 1.48538 1.28798 1.72033 1.46100 1.72974 1.07715 1.09129 1.21105 1.00673 0.97507 0.76459 1.19043 0.88633 0.91456 0.98050 1.20370 1.06928 1.22325 1.04196 0.92194 1.24962 0.97025 0.94664 0.96350 1.70007 1.41423 1.31591 1.07828 0.86673 0.82468 0.81007 0.78367 1.20625 1.21210 1.19828 1.22504 1.03308 1.01191 0.91557 1.22977 1.02874 0.99388 0.99455 1.20632 0.93401 0.99421 1.03241 1.20942 0.93647 0.96017 0.95900 0.84702 0.84647 0.88895 0.92176 0.90299 0.90378 0.90015 0.89766 0.76918 0.94191 0.90896 0.92820 0.91700 0.89830 0.90328 0.91640 0.84739 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.42 18.54 41.84 0.78 -5.64 16 2 C 0.26 3.35 15.33 -22.47 -0.34 3.01 16 3 C -0.07 -0.76 5.74 -106.79 -0.61 -1.38 16 4 C -0.03 -0.40 9.75 -39.21 -0.38 -0.78 16 5 C -0.17 -2.12 8.38 -39.45 -0.33 -2.45 16 6 C 0.15 1.73 5.48 -83.83 -0.46 1.27 16 7 N -0.44 -5.16 4.72 -160.58 -0.76 -5.92 16 8 C 0.04 0.30 5.72 -2.18 -0.01 0.29 16 9 C -0.12 -0.86 7.00 -25.35 -0.18 -1.04 16 10 C -0.11 -1.04 6.54 -25.35 -0.17 -1.21 16 11 C 0.04 0.45 2.11 -67.22 -0.14 0.30 16 12 H 0.09 0.88 6.68 -51.93 -0.35 0.54 16 13 C 0.51 8.42 5.10 -10.98 -0.06 8.36 16 14 O -0.53 -11.08 16.59 5.56 0.09 -10.99 16 15 N -0.71 -12.10 5.51 -60.30 -0.33 -12.44 16 16 C 0.17 3.53 5.57 -4.04 -0.02 3.51 16 17 C 0.03 0.64 1.35 -155.67 -0.21 0.43 16 18 C -0.50 -12.39 8.83 -34.44 -0.30 -12.70 16 19 H 0.06 1.46 7.82 -52.48 -0.41 1.05 16 20 C 0.07 1.92 5.39 -17.82 -0.10 1.82 16 21 N -0.87 -23.74 12.89 55.43 0.71 -23.02 16 22 Si 0.89 20.19 29.54 -169.99 -5.02 15.16 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.15 -3.22 9.35 -26.74 -0.25 -3.47 16 27 C -0.21 -4.03 9.91 -26.73 -0.26 -4.29 16 28 C -0.15 -1.42 9.24 -39.44 -0.36 -1.79 16 29 C -0.04 -0.41 9.75 -39.21 -0.38 -0.79 16 30 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.14 1.84 5.03 -52.49 -0.26 1.58 16 32 H 0.09 0.60 7.79 -51.92 -0.40 0.20 16 33 H 0.06 0.40 7.97 -51.93 -0.41 -0.01 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.88 7.85 -51.93 -0.41 0.48 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 5.94 8.48 -40.82 -0.35 5.60 16 39 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 40 H 0.07 1.83 8.12 -51.93 -0.42 1.41 16 41 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 42 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 43 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.13 1.02 7.54 -52.49 -0.40 0.63 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -31.20 396.23 -9.90 -41.10 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.76 Total: 6.68 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -4.58 Total: -10.90 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.40 Total: -47.02 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.20 -9.90 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797560828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.890 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds