Wall clock time and date at job start Tue Mar 31 2020 22:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39809 * 120.07313 * 324.51160 * 3 2 1 5 5 C 1.37656 * 119.92134 * 180.02562 * 4 3 2 6 6 C 1.39174 * 120.07425 * 359.97438 * 5 4 3 7 7 N 1.39183 * 119.92413 * 180.02562 * 6 5 4 8 8 C 1.48563 * 111.00270 * 126.56968 * 7 6 5 9 9 C 1.54379 * 104.59542 * 200.95639 * 8 7 6 10 10 C 1.54255 * 105.06074 * 23.85633 * 9 8 7 11 11 C 1.48562 * 110.99992 * 11.15083 * 7 6 5 12 12 H 1.09005 * 110.51084 * 40.21738 * 11 7 6 13 13 C 1.50700 * 110.41211 * 277.82037 * 11 7 6 14 14 O 1.21273 * 119.99922 * 342.38258 * 13 11 7 15 15 N 1.34778 * 119.99787 * 162.37988 * 13 11 7 16 16 C 1.46503 * 119.99976 * 174.96777 * 15 13 11 17 17 C 1.52997 * 109.47016 * 185.01205 * 16 15 13 18 18 C 1.50695 * 115.54797 * 279.54890 * 17 16 15 19 19 H 1.08003 * 119.99702 * 94.60426 * 18 17 16 20 20 C 1.37873 * 120.00369 * 274.59901 * 18 17 16 21 21 N 1.31518 * 119.99865 * 5.70197 * 20 18 17 22 22 Si 1.86800 * 120.00268 * 185.70816 * 20 18 17 23 23 H 1.48499 * 109.47568 * 89.99997 * 22 20 18 24 24 H 1.48502 * 109.46933 * 209.99792 * 22 20 18 25 25 H 1.48495 * 109.46900 * 329.99602 * 22 20 18 26 26 C 1.52998 * 117.49524 * 133.84491 * 17 16 15 27 27 C 1.52994 * 60.00194 * 252.50882 * 26 17 16 28 28 C 1.39180 * 120.15509 * 0.27472 * 6 5 4 29 29 C 1.37656 * 120.07194 * 359.45588 * 28 6 5 30 30 H 1.08000 * 120.03901 * 359.97438 * 4 3 2 31 31 H 1.07991 * 119.95810 * 179.97438 * 5 4 3 32 32 H 1.09010 * 110.40570 * 82.18475 * 8 7 6 33 33 H 1.08990 * 110.41094 * 319.74264 * 8 7 6 34 34 H 1.08995 * 110.32531 * 264.96039 * 9 8 7 35 35 H 1.09004 * 110.40792 * 142.79550 * 9 8 7 36 36 H 1.09004 * 110.32667 * 241.10299 * 10 9 8 37 37 H 1.08999 * 110.41364 * 118.93434 * 10 9 8 38 38 H 0.97001 * 119.99777 * 354.69388 * 15 13 11 39 39 H 1.08998 * 109.46740 * 305.01136 * 16 15 13 40 40 H 1.08996 * 109.46787 * 65.00681 * 16 15 13 41 41 H 0.97002 * 119.99916 * 185.00142 * 21 20 18 42 42 H 1.08996 * 117.50469 * 359.97438 * 26 17 16 43 43 H 1.09004 * 117.50018 * 145.01948 * 26 17 16 44 44 H 1.09002 * 117.49957 * 252.51389 * 27 26 17 45 45 H 1.08997 * 117.52238 * 107.47747 * 27 26 17 46 46 H 1.07997 * 119.96469 * 179.70647 * 28 6 5 47 47 H 1.07998 * 120.04031 * 180.27334 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.9842 0.7024 5 6 4.6456 -0.9803 0.7007 6 6 5.3394 0.0022 0.0004 7 7 6.7312 0.0028 0.0004 8 6 7.2637 0.0293 -1.3863 9 6 8.7058 -0.5069 -1.2595 10 6 8.7062 -1.3554 0.0286 11 6 7.2642 -1.2606 0.5720 12 1 6.6737 -2.1120 0.2334 13 6 7.2732 -1.1938 2.0775 14 8 7.1897 -0.1213 2.6373 15 7 7.3738 -2.3260 2.8017 16 6 7.4936 -2.2546 4.2600 17 6 7.7169 -3.6596 4.8228 18 6 6.4783 -4.5052 4.9700 19 1 6.1967 -5.1917 4.1851 20 6 5.7045 -4.4027 6.1065 21 7 5.9825 -3.4893 7.0111 22 14 4.2614 -5.5610 6.3617 23 1 4.7218 -6.7736 7.0848 24 1 3.2127 -4.8769 7.1601 25 1 3.7025 -5.9534 5.0430 26 6 8.8208 -3.8348 5.8677 27 6 9.0184 -4.3719 4.4488 28 6 4.6447 0.9871 -0.6956 29 6 3.2681 0.9859 -0.7027 30 1 2.7312 -1.7466 1.2463 31 1 5.1877 -1.7404 1.2434 32 1 7.2697 1.0489 -1.7717 33 1 6.6724 -0.6190 -2.0329 34 1 9.4104 0.3197 -1.1686 35 1 8.9583 -1.1257 -2.1206 36 1 9.4110 -0.9453 0.7520 37 1 8.9577 -2.3914 -0.1986 38 1 7.3630 -3.1883 2.3576 39 1 8.3385 -1.6187 4.5244 40 1 6.5788 -1.8362 4.6796 41 1 5.4847 -3.4636 7.8432 42 1 9.3881 -2.9493 6.1538 43 1 8.6512 -4.5618 6.6619 44 1 8.9787 -5.4522 4.3095 45 1 9.7152 -3.8397 3.8013 46 1 5.1862 1.7508 -1.2340 47 1 2.7296 1.7478 -1.2466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797560828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:58 Heat of formation + Delta-G solvation = 40.174490 kcal Electronic energy + Delta-G solvation = -29133.425189 eV Core-core repulsion = 25281.399514 eV Total energy + Delta-G solvation = -3852.025675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99888 -40.21680 -39.02319 -38.24700 -37.30502 -34.95697 -33.95775 -33.78701 -32.42030 -30.63772 -29.91364 -28.07650 -27.01269 -24.92371 -24.03537 -23.17125 -22.78106 -21.70679 -21.24955 -20.73097 -19.89001 -18.67749 -18.31606 -17.81533 -16.83620 -16.64949 -16.29799 -16.21947 -15.91734 -15.60068 -15.16934 -15.16730 -14.93901 -14.81597 -14.59762 -14.43269 -14.30032 -14.05684 -13.79661 -13.65059 -13.54616 -13.40736 -13.00409 -12.99791 -12.80701 -12.76140 -12.47252 -12.39050 -12.18080 -12.04857 -12.02199 -11.53994 -11.45141 -10.92042 -10.82267 -10.66241 -10.45362 -10.05716 -9.99496 -9.85517 -8.92758 -8.11164 -6.23438 -0.22311 0.36532 1.40920 1.44233 1.51039 1.59991 1.70517 1.85194 2.13613 2.42196 2.79296 2.85980 2.98917 3.19255 3.45053 3.54167 3.59166 3.85418 3.89526 3.97818 4.08685 4.24079 4.28070 4.29187 4.43501 4.54239 4.54784 4.58629 4.64477 4.73133 4.77405 4.86191 4.88242 5.00762 5.03024 5.05154 5.06606 5.09690 5.21102 5.29141 5.33457 5.33903 5.57411 5.60609 5.64045 5.69148 5.79037 5.80815 6.12910 6.37096 6.44205 6.77631 6.86238 7.41322 7.46973 8.97114 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008729 B = 0.003956 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.092436 B = 7076.117560 C = 9690.623218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.284 3.716 3 C -0.078 4.078 4 C -0.040 4.040 5 C -0.189 4.189 6 C 0.140 3.860 7 N -0.462 5.462 8 C 0.037 3.963 9 C -0.116 4.116 10 C -0.112 4.112 11 C 0.045 3.955 12 H 0.107 0.893 13 C 0.510 3.490 14 O -0.576 6.576 15 N -0.702 5.702 16 C 0.185 3.815 17 C 0.007 3.993 18 C -0.502 4.502 19 H 0.064 0.936 20 C 0.026 3.974 21 N -0.908 5.908 22 Si 0.943 3.057 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.264 1.264 26 C -0.163 4.163 27 C -0.169 4.169 28 C -0.142 4.142 29 C -0.029 4.029 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.410 0.590 39 H 0.031 0.969 40 H 0.024 0.976 41 H 0.258 0.742 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.163 0.837 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 4.615 -22.494 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.030 4.030 3 C -0.083 4.083 4 C -0.062 4.062 5 C -0.210 4.210 6 C 0.039 3.961 7 N -0.175 5.175 8 C -0.087 4.087 9 C -0.154 4.154 10 C -0.151 4.151 11 C -0.066 4.066 12 H 0.124 0.876 13 C 0.296 3.704 14 O -0.455 6.455 15 N -0.353 5.353 16 C 0.061 3.939 17 C 0.006 3.994 18 C -0.540 4.540 19 H 0.082 0.918 20 C -0.175 4.175 21 N -0.545 5.545 22 Si 0.769 3.231 23 H -0.201 1.201 24 H -0.222 1.222 25 H -0.188 1.188 26 C -0.201 4.201 27 C -0.206 4.206 28 C -0.163 4.163 29 C -0.049 4.049 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.246 0.754 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.180 0.820 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.178 5.959 -21.650 22.840 hybrid contribution -0.871 -1.496 1.124 2.064 sum 3.307 4.463 -20.526 21.264 Atomic orbital electron populations 1.81249 1.13312 1.09759 1.10697 1.25889 0.92736 0.92239 0.92090 1.15984 0.83324 1.01661 1.07324 1.21061 0.93700 0.96526 0.94868 1.21185 0.94562 1.00538 1.04749 1.19538 0.89038 0.93479 0.94032 1.61793 1.04734 1.32470 1.18507 1.23456 0.95855 1.04211 0.85150 1.22356 0.95688 1.00035 0.97283 1.22342 0.91486 1.03282 0.97964 1.22890 1.00390 0.92919 0.90405 0.87552 1.20849 0.75829 0.83634 0.90107 1.90679 1.50661 1.30568 1.73610 1.45919 1.73066 1.08892 1.07400 1.20528 0.97786 0.96642 0.78951 1.19020 0.89008 0.91825 0.99552 1.20729 1.07516 1.21915 1.03811 0.91770 1.25645 0.99293 0.95976 0.96563 1.70132 1.42829 1.33325 1.08245 0.85793 0.79652 0.79271 0.78386 1.20145 1.22196 1.18821 1.22441 1.03984 1.01298 0.92395 1.22971 1.00478 0.99864 0.97303 1.20921 0.93469 0.99182 1.02681 1.21260 0.93684 0.95437 0.94559 0.85037 0.86244 0.87272 0.90476 0.90245 0.87470 0.92065 0.87244 0.75422 0.95098 0.95729 0.93332 0.91377 0.92012 0.89391 0.88821 0.81981 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.03 18.54 19.00 0.35 -13.68 16 2 C 0.28 7.09 15.33 88.33 1.35 8.45 16 3 C -0.08 -1.67 5.74 -21.27 -0.12 -1.79 16 4 C -0.04 -0.96 9.75 22.51 0.22 -0.75 16 5 C -0.19 -4.79 8.38 22.36 0.19 -4.60 16 6 C 0.14 3.09 5.48 38.43 0.21 3.30 16 7 N -0.46 -9.88 4.72 -661.95 -3.13 -13.00 16 8 C 0.04 0.43 5.72 86.45 0.49 0.92 16 9 C -0.12 -1.16 7.00 31.49 0.22 -0.94 16 10 C -0.11 -1.75 6.54 31.49 0.21 -1.54 16 11 C 0.04 0.98 2.11 44.32 0.09 1.07 16 12 H 0.11 1.94 6.68 -2.38 -0.02 1.92 16 13 C 0.51 16.97 5.10 87.66 0.45 17.41 16 14 O -0.58 -25.11 16.59 -3.01 -0.05 -25.16 16 15 N -0.70 -24.06 5.51 -463.07 -2.55 -26.62 16 16 C 0.19 8.19 5.57 86.38 0.48 8.67 16 17 C 0.01 0.30 1.35 -52.93 -0.07 0.23 16 18 C -0.50 -25.01 8.83 25.60 0.23 -24.78 16 19 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 20 C 0.03 1.36 5.39 84.65 0.46 1.81 16 21 N -0.91 -51.25 12.89 21.45 0.28 -50.97 16 22 Si 0.94 42.06 29.54 68.60 2.03 44.09 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 C -0.16 -7.17 9.35 30.59 0.29 -6.88 16 27 C -0.17 -6.19 9.91 30.59 0.30 -5.88 16 28 C -0.14 -2.35 9.24 22.36 0.21 -2.14 16 29 C -0.03 -0.46 9.75 22.51 0.22 -0.24 16 30 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.12 3.32 5.03 -2.92 -0.01 3.31 16 32 H 0.11 0.94 7.79 -2.38 -0.02 0.92 16 33 H 0.08 0.68 7.97 -2.39 -0.02 0.66 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.06 1.22 7.85 -2.38 -0.02 1.20 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.41 11.86 8.48 -92.71 -0.79 11.07 16 39 H 0.03 1.40 7.94 -2.39 -0.02 1.38 16 40 H 0.02 1.31 8.12 -2.39 -0.02 1.29 16 41 H 0.26 14.13 8.32 -92.71 -0.77 13.35 16 42 H 0.07 2.90 8.08 -2.39 -0.02 2.88 16 43 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 44 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 46 H 0.16 1.76 7.54 -2.91 -0.02 1.74 16 47 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -71.47 396.23 2.56 -68.91 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.21 Total: 24.10 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.42 Total: -7.68 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -5.05 Total: -104.27 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -71.47 2.56 -68.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797560828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.087 kcal (2) G-P(sol) polarization free energy of solvation -71.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds