Wall clock time and date at job start Tue Mar 31 2020 22:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48507 * 109.46913 * 269.99805 * 3 2 1 5 5 H 1.48501 * 109.47423 * 29.99617 * 3 2 1 6 6 H 1.48495 * 109.47093 * 149.99834 * 3 2 1 7 7 C 1.37885 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99856 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99932 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47233 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47178 * 304.99889 * 11 10 9 13 13 N 1.46904 * 109.47358 * 65.00010 * 11 10 9 14 14 C 1.50700 * 109.47254 * 184.99696 * 11 10 9 15 15 O 1.21685 * 120.00508 * 260.00218 * 14 11 10 16 16 N 1.32451 * 119.99618 * 80.00029 * 14 11 10 17 17 C 1.34174 * 119.99601 * 235.50754 * 16 14 11 18 18 C 1.40071 * 120.06262 * 5.11748 * 17 16 14 19 19 C 1.36704 * 119.32516 * 179.74211 * 18 17 16 20 20 C 1.39901 * 119.42942 * 0.53351 * 19 18 17 21 21 C 1.35556 * 120.09954 * 359.71773 * 20 19 18 22 22 N 1.35529 * 120.69522 * 0.02562 * 21 20 19 23 23 C 1.46502 * 119.71476 * 180.02562 * 22 21 20 24 24 C 1.50697 * 109.47043 * 264.97160 * 23 22 21 25 25 C 1.38242 * 120.00180 * 269.73196 * 24 23 22 26 26 C 1.38233 * 120.00022 * 179.76768 * 25 24 23 27 27 C 1.38236 * 119.99818 * 0.50342 * 26 25 24 28 28 C 1.38233 * 120.00297 * 359.74432 * 27 26 25 29 29 C 1.38233 * 120.00138 * 90.00068 * 24 23 22 30 30 H 0.96990 * 119.99826 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.01101 * 9 7 2 32 32 H 1.09005 * 109.47102 * 60.00393 * 9 7 2 33 33 H 1.09004 * 109.46748 * 300.00063 * 10 9 7 34 34 H 1.08996 * 109.47250 * 59.99961 * 10 9 7 35 35 H 1.00897 * 110.99887 * 59.99599 * 13 11 10 36 36 H 1.00902 * 111.00220 * 183.95261 * 13 11 10 37 37 H 1.08000 * 120.33547 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.28043 * 180.25246 * 19 18 17 39 39 H 1.07997 * 119.94588 * 179.73671 * 20 19 18 40 40 H 1.08007 * 119.65175 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47129 * 24.97510 * 23 22 21 42 42 H 1.09001 * 109.46856 * 144.97718 * 23 22 21 43 43 H 1.08004 * 119.99447 * 359.97438 * 25 24 23 44 44 H 1.07998 * 119.99782 * 180.22936 * 26 25 24 45 45 H 1.08005 * 119.99721 * 179.73275 * 27 26 25 46 46 H 1.08001 * 120.00171 * 179.97438 * 28 27 26 47 47 H 1.08002 * 119.99420 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 1 5.9149 -2.0472 -0.8417 13 7 6.0412 -2.0512 1.2553 14 6 6.0539 -4.0520 -0.1235 15 8 6.4292 -4.6531 0.8657 16 7 6.0869 -4.6418 -1.3090 17 6 5.4582 -5.8127 -1.4935 18 6 4.6782 -6.3597 -0.4666 19 6 4.0399 -7.5509 -0.6727 20 6 4.1867 -8.2061 -1.9001 21 6 4.9515 -7.6582 -2.8760 22 7 5.5821 -6.4749 -2.6784 23 6 6.4029 -5.9020 -3.7482 24 6 7.8430 -6.2949 -3.5415 25 6 8.6786 -5.4886 -2.7912 26 6 9.9984 -5.8515 -2.5977 27 6 10.4853 -7.0152 -3.1629 28 6 9.6511 -7.8188 -3.9173 29 6 8.3300 -7.4586 -4.1066 30 1 -0.4849 0.8400 -0.0004 31 1 3.8746 -0.6808 -0.8904 32 1 3.8752 -0.6798 0.8895 33 1 3.6586 -3.1502 0.8904 34 1 3.6579 -3.1507 -0.8896 35 1 5.7176 -2.5800 2.0514 36 1 7.0478 -1.9807 1.2530 37 1 4.5790 -5.8437 0.4770 38 1 3.4313 -7.9846 0.1070 39 1 3.6897 -9.1497 -2.0703 40 1 5.0602 -8.1704 -3.8206 41 1 6.0584 -6.2780 -4.7115 42 1 6.3166 -4.8156 -3.7301 43 1 8.2994 -4.5769 -2.3537 44 1 10.6502 -5.2234 -2.0085 45 1 11.5175 -7.2965 -3.0152 46 1 10.0316 -8.7279 -4.3593 47 1 7.6783 -8.0860 -4.6967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825876530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:08 Heat of formation + Delta-G solvation = 54.230530 kcal Electronic energy + Delta-G solvation = -28961.599374 eV Core-core repulsion = 25110.183215 eV Total energy + Delta-G solvation = -3851.416159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44841 -39.51077 -39.06691 -35.25071 -35.17174 -34.20716 -32.65374 -31.79459 -31.17246 -30.36861 -29.86696 -27.21355 -26.58278 -24.51852 -23.89825 -22.81990 -22.56015 -21.54562 -20.15078 -19.20922 -17.90759 -17.24296 -17.00601 -16.87357 -16.56596 -15.97785 -15.54929 -15.44138 -15.29447 -15.11947 -14.82343 -14.55651 -14.07693 -13.89496 -13.67583 -13.36924 -13.15852 -12.93195 -12.66620 -12.53284 -12.42173 -12.21999 -11.98261 -11.56259 -11.52349 -11.28185 -10.92417 -10.82201 -10.74261 -10.45374 -10.29240 -9.85073 -9.70326 -9.55188 -9.34820 -9.20318 -9.10009 -9.01710 -8.43178 -8.28544 -7.50256 -5.93945 -3.90564 0.52299 0.90730 1.13663 1.22358 2.23487 2.65972 3.36350 3.41505 3.48423 3.53736 3.58565 4.13424 4.24518 4.34617 4.47399 4.57747 4.62279 4.70184 4.74881 4.85672 4.95196 5.01120 5.03983 5.14727 5.15552 5.28664 5.37193 5.41722 5.63161 5.65102 5.69996 5.79091 5.80708 5.92600 6.05760 6.11776 6.13670 6.26271 6.29028 6.47284 6.53407 6.62370 6.70167 6.81082 7.01584 7.46018 7.50432 7.69603 7.72847 7.83903 7.94837 8.51926 8.64809 9.10821 9.69815 11.19660 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.002945 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.004621 B = 9505.522649 C =10308.560469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.518 4.518 8 H 0.068 0.932 9 C -0.003 4.003 10 C -0.080 4.080 11 C 0.076 3.924 12 H 0.098 0.902 13 N -0.817 5.817 14 C 0.484 3.516 15 O -0.547 6.547 16 N -0.675 5.675 17 C 0.468 3.532 18 C -0.211 4.211 19 C -0.018 4.018 20 C -0.221 4.221 21 C 0.130 3.870 22 N -0.449 5.449 23 C 0.139 3.861 24 C -0.116 4.116 25 C -0.077 4.077 26 C -0.126 4.126 27 C -0.111 4.111 28 C -0.129 4.129 29 C -0.105 4.105 30 H 0.261 0.739 31 H 0.008 0.992 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.345 0.655 36 H 0.333 0.667 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.331 -21.371 -11.022 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.556 4.556 8 H 0.086 0.914 9 C -0.040 4.040 10 C -0.118 4.118 11 C -0.039 4.039 12 H 0.116 0.884 13 N -0.344 5.344 14 C 0.270 3.730 15 O -0.425 6.425 16 N -0.423 5.423 17 C 0.215 3.785 18 C -0.234 4.234 19 C -0.043 4.043 20 C -0.246 4.246 21 C 0.002 3.998 22 N -0.137 5.137 23 C 0.018 3.982 24 C -0.117 4.117 25 C -0.096 4.096 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.147 4.147 29 C -0.123 4.123 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.185 0.815 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.156 0.844 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.549 -20.144 -11.187 28.964 hybrid contribution 0.526 -0.327 0.573 0.844 sum 18.075 -20.471 -10.613 29.298 Atomic orbital electron populations 1.69927 1.06341 1.26740 1.51816 1.25008 0.94695 0.99201 0.94636 0.86772 0.80771 0.83409 0.78420 1.20524 1.21651 1.18344 1.21193 0.89817 0.94251 1.50314 0.91423 1.19467 0.96159 0.91284 0.97110 1.21344 0.88308 1.01374 1.00756 1.21818 0.98549 0.89263 0.94298 0.88381 1.59022 1.15160 1.56569 1.03691 1.22651 0.74354 0.93016 0.82984 1.90708 1.43131 1.68580 1.40094 1.67743 1.36243 1.11312 1.27013 1.18404 0.90199 0.85968 0.83887 1.21879 1.02139 0.99185 1.00194 1.21399 0.93297 0.93116 0.96474 1.20692 1.05983 1.03664 0.94267 1.21983 0.92264 0.84983 1.00540 1.43497 1.39550 1.17462 1.13224 1.20998 0.86608 1.02313 0.88287 1.19901 0.94937 0.96271 1.00586 1.21423 0.93011 0.99939 0.95208 1.21256 0.95964 0.97192 0.99975 1.21233 0.99778 0.94798 0.97095 1.21081 0.93892 0.99951 0.99804 1.21019 0.95901 0.95849 0.99550 0.92924 0.97374 0.94827 0.92865 0.92609 0.84199 0.85573 0.83211 0.84451 0.83502 0.81499 0.88139 0.86392 0.84419 0.85975 0.86118 0.86030 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.85 13.96 55.43 0.77 -28.08 16 2 C 0.06 1.96 5.47 -17.81 -0.10 1.87 16 3 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.52 -15.35 9.66 -34.44 -0.33 -15.68 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.00 -0.07 3.93 -27.89 -0.11 -0.18 16 10 C -0.08 -1.71 4.78 -26.74 -0.13 -1.84 16 11 C 0.08 1.42 3.22 -68.87 -0.22 1.20 16 12 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 13 N -0.82 -14.60 8.44 -5.65 -0.05 -14.65 16 14 C 0.48 8.72 5.49 -12.01 -0.07 8.65 16 15 O -0.55 -10.85 15.43 5.20 0.08 -10.77 16 16 N -0.67 -10.79 7.72 -11.95 -0.09 -10.88 16 17 C 0.47 6.56 7.22 -155.68 -1.12 5.43 16 18 C -0.21 -2.92 8.90 -39.45 -0.35 -3.28 16 19 C -0.02 -0.18 10.09 -39.51 -0.40 -0.58 16 20 C -0.22 -1.61 10.00 -39.92 -0.40 -2.01 16 21 C 0.13 0.89 10.29 -16.88 -0.17 0.72 16 22 N -0.45 -4.48 2.62 -117.71 -0.31 -4.78 16 23 C 0.14 1.16 5.42 -5.19 -0.03 1.13 16 24 C -0.12 -1.08 5.42 -104.62 -0.57 -1.65 16 25 C -0.08 -0.87 9.32 -39.58 -0.37 -1.24 16 26 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.11 -0.95 10.05 -39.58 -0.40 -1.34 16 28 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 29 C -0.10 -0.79 9.70 -39.58 -0.38 -1.18 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 31 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 32 H 0.03 0.87 6.81 -51.93 -0.35 0.52 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.34 6.17 8.58 -39.29 -0.34 5.83 16 36 H 0.33 5.27 9.06 -39.29 -0.36 4.91 16 37 H 0.15 2.43 6.29 -52.49 -0.33 2.10 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.17 0.42 7.99 -52.48 -0.42 0.00 16 41 H 0.10 0.48 7.88 -51.93 -0.41 0.07 16 42 H 0.12 1.17 7.42 -51.93 -0.39 0.79 16 43 H 0.14 1.78 6.89 -52.48 -0.36 1.42 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -37.29 393.00 -11.02 -48.31 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.74 Total: 9.89 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -5.94 Total: -13.03 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.33 Total: -58.39 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.29 -11.02 -48.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825876530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.538 kcal (2) G-P(sol) polarization free energy of solvation -37.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds