Wall clock time and date at job start Tue Mar 31 2020 22:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48507 * 109.46913 * 269.99805 * 3 2 1 5 5 H 1.48501 * 109.47423 * 29.99617 * 3 2 1 6 6 H 1.48495 * 109.47093 * 149.99834 * 3 2 1 7 7 C 1.37885 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99856 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99932 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47233 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47178 * 304.99889 * 11 10 9 13 13 N 1.46904 * 109.47358 * 65.00010 * 11 10 9 14 14 C 1.50700 * 109.47254 * 184.99696 * 11 10 9 15 15 O 1.21685 * 120.00508 * 260.00218 * 14 11 10 16 16 N 1.32451 * 119.99618 * 80.00029 * 14 11 10 17 17 C 1.34174 * 119.99601 * 235.50754 * 16 14 11 18 18 C 1.40071 * 120.06262 * 5.11748 * 17 16 14 19 19 C 1.36704 * 119.32516 * 179.74211 * 18 17 16 20 20 C 1.39901 * 119.42942 * 0.53351 * 19 18 17 21 21 C 1.35556 * 120.09954 * 359.71773 * 20 19 18 22 22 N 1.35529 * 120.69522 * 0.02562 * 21 20 19 23 23 C 1.46502 * 119.71476 * 180.02562 * 22 21 20 24 24 C 1.50697 * 109.47043 * 264.97160 * 23 22 21 25 25 C 1.38242 * 120.00180 * 269.73196 * 24 23 22 26 26 C 1.38233 * 120.00022 * 179.76768 * 25 24 23 27 27 C 1.38236 * 119.99818 * 0.50342 * 26 25 24 28 28 C 1.38233 * 120.00297 * 359.74432 * 27 26 25 29 29 C 1.38233 * 120.00138 * 90.00068 * 24 23 22 30 30 H 0.96990 * 119.99826 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.01101 * 9 7 2 32 32 H 1.09005 * 109.47102 * 60.00393 * 9 7 2 33 33 H 1.09004 * 109.46748 * 300.00063 * 10 9 7 34 34 H 1.08996 * 109.47250 * 59.99961 * 10 9 7 35 35 H 1.00897 * 110.99887 * 59.99599 * 13 11 10 36 36 H 1.00902 * 111.00220 * 183.95261 * 13 11 10 37 37 H 1.08000 * 120.33547 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.28043 * 180.25246 * 19 18 17 39 39 H 1.07997 * 119.94588 * 179.73671 * 20 19 18 40 40 H 1.08007 * 119.65175 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47129 * 24.97510 * 23 22 21 42 42 H 1.09001 * 109.46856 * 144.97718 * 23 22 21 43 43 H 1.08004 * 119.99447 * 359.97438 * 25 24 23 44 44 H 1.07998 * 119.99782 * 180.22936 * 26 25 24 45 45 H 1.08005 * 119.99721 * 179.73275 * 27 26 25 46 46 H 1.08001 * 120.00171 * 179.97438 * 28 27 26 47 47 H 1.08002 * 119.99420 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 1 5.9149 -2.0472 -0.8417 13 7 6.0412 -2.0512 1.2553 14 6 6.0539 -4.0520 -0.1235 15 8 6.4292 -4.6531 0.8657 16 7 6.0869 -4.6418 -1.3090 17 6 5.4582 -5.8127 -1.4935 18 6 4.6782 -6.3597 -0.4666 19 6 4.0399 -7.5509 -0.6727 20 6 4.1867 -8.2061 -1.9001 21 6 4.9515 -7.6582 -2.8760 22 7 5.5821 -6.4749 -2.6784 23 6 6.4029 -5.9020 -3.7482 24 6 7.8430 -6.2949 -3.5415 25 6 8.6786 -5.4886 -2.7912 26 6 9.9984 -5.8515 -2.5977 27 6 10.4853 -7.0152 -3.1629 28 6 9.6511 -7.8188 -3.9173 29 6 8.3300 -7.4586 -4.1066 30 1 -0.4849 0.8400 -0.0004 31 1 3.8746 -0.6808 -0.8904 32 1 3.8752 -0.6798 0.8895 33 1 3.6586 -3.1502 0.8904 34 1 3.6579 -3.1507 -0.8896 35 1 5.7176 -2.5800 2.0514 36 1 7.0478 -1.9807 1.2530 37 1 4.5790 -5.8437 0.4770 38 1 3.4313 -7.9846 0.1070 39 1 3.6897 -9.1497 -2.0703 40 1 5.0602 -8.1704 -3.8206 41 1 6.0584 -6.2780 -4.7115 42 1 6.3166 -4.8156 -3.7301 43 1 8.2994 -4.5769 -2.3537 44 1 10.6502 -5.2234 -2.0085 45 1 11.5175 -7.2965 -3.0152 46 1 10.0316 -8.7279 -4.3593 47 1 7.6783 -8.0860 -4.6967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825876530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:07 Heat of formation + Delta-G solvation = 29.165394 kcal Electronic energy + Delta-G solvation = -28962.686280 eV Core-core repulsion = 25110.183215 eV Total energy + Delta-G solvation = -3852.503065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31304 -40.61628 -39.87615 -36.89594 -35.93498 -35.30129 -34.79174 -32.49187 -32.32280 -31.81197 -30.78599 -28.49752 -27.76783 -25.84826 -24.82898 -23.87019 -23.41887 -22.41271 -21.88867 -20.50270 -18.93104 -18.74483 -18.03930 -17.91261 -17.69110 -16.99968 -16.91011 -16.52043 -16.17762 -16.03488 -15.95763 -15.69284 -15.40032 -15.28955 -14.85368 -14.68890 -14.30074 -14.02535 -13.85457 -13.64018 -13.53484 -13.34938 -13.10965 -12.85698 -12.76619 -12.53073 -12.24710 -12.10734 -11.91857 -11.78006 -11.69176 -11.59290 -11.45312 -11.24424 -11.09741 -10.75126 -10.53138 -9.85798 -9.82313 -9.65394 -8.50412 -8.28856 -6.31926 -0.29640 0.24186 0.31610 0.47566 1.36123 1.37706 1.39185 1.54563 1.58963 2.38660 2.47700 2.85326 3.06919 3.23028 3.57012 3.60909 3.69185 3.77498 3.91527 4.00632 4.03717 4.12293 4.18214 4.25255 4.26310 4.27529 4.42251 4.51922 4.62918 4.64973 4.70105 4.75045 4.84762 5.01728 5.04525 5.06066 5.13506 5.26315 5.33817 5.40129 5.49967 5.59037 5.59226 5.60549 5.67247 5.82799 5.88119 6.06123 6.07704 6.28112 6.44523 6.54478 6.74236 7.31718 7.32258 8.87961 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.002945 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.004621 B = 9505.522649 C =10308.560469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.531 4.531 8 H 0.029 0.971 9 C 0.007 3.993 10 C -0.063 4.063 11 C 0.084 3.916 12 H 0.099 0.901 13 N -0.820 5.820 14 C 0.490 3.510 15 O -0.582 6.582 16 N -0.702 5.702 17 C 0.455 3.545 18 C -0.271 4.271 19 C 0.005 3.995 20 C -0.223 4.223 21 C 0.147 3.853 22 N -0.439 5.439 23 C 0.135 3.865 24 C -0.124 4.124 25 C -0.107 4.107 26 C -0.149 4.149 27 C -0.118 4.118 28 C -0.130 4.130 29 C -0.096 4.096 30 H 0.267 0.733 31 H 0.014 0.986 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.343 0.657 36 H 0.344 0.656 37 H 0.111 0.889 38 H 0.155 0.845 39 H 0.193 0.807 40 H 0.231 0.769 41 H 0.153 0.847 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.138 0.862 46 H 0.152 0.848 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.197 -24.365 -14.328 33.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.569 4.569 8 H 0.047 0.953 9 C -0.031 4.031 10 C -0.101 4.101 11 C -0.032 4.032 12 H 0.117 0.883 13 N -0.349 5.349 14 C 0.277 3.723 15 O -0.463 6.463 16 N -0.455 5.455 17 C 0.207 3.793 18 C -0.296 4.296 19 C -0.020 4.020 20 C -0.246 4.246 21 C 0.019 3.981 22 N -0.125 5.125 23 C 0.015 3.985 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.167 4.167 27 C -0.136 4.136 28 C -0.148 4.148 29 C -0.115 4.115 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.129 0.871 38 H 0.173 0.827 39 H 0.210 0.790 40 H 0.247 0.753 41 H 0.171 0.829 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.156 0.844 46 H 0.170 0.830 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 18.414 -23.186 -14.543 32.988 hybrid contribution 0.172 0.288 1.468 1.506 sum 18.587 -22.898 -13.075 32.260 Atomic orbital electron populations 1.70062 1.08153 1.28133 1.52848 1.25953 0.95613 1.03358 0.94029 0.85656 0.79528 0.78227 0.79279 1.18972 1.20771 1.17359 1.21477 0.92039 0.93039 1.50379 0.95268 1.19325 0.93316 0.93510 0.96909 1.21042 0.90559 0.98769 0.99748 1.21572 0.96360 0.90620 0.94647 0.88271 1.59003 1.16108 1.56457 1.03330 1.22345 0.74061 0.92463 0.83460 1.90661 1.45249 1.69001 1.41380 1.67549 1.38404 1.13639 1.25871 1.18527 0.89637 0.85710 0.85424 1.21643 1.06514 1.01749 0.99649 1.21832 0.90744 0.91084 0.98307 1.21257 1.05840 1.04909 0.92638 1.23153 0.89402 0.82937 1.02629 1.43858 1.38788 1.17890 1.11962 1.21238 0.86264 1.01464 0.89538 1.20007 0.95010 0.96860 1.00571 1.21375 0.94164 1.00012 0.97020 1.21362 0.95826 0.98470 1.01073 1.21517 1.01042 0.94141 0.96876 1.21522 0.93941 1.00511 0.98817 1.21450 0.96428 0.94975 0.98608 0.92468 0.96782 0.95215 0.94322 0.93252 0.84432 0.84301 0.87140 0.82720 0.79030 0.75269 0.82919 0.88861 0.87534 0.86550 0.84371 0.82999 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.87 13.96 21.45 0.30 -61.57 16 2 C 0.01 0.43 5.47 84.66 0.46 0.90 16 3 Si 0.95 47.28 27.47 68.60 1.88 49.16 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.25 -12.00 6.54 99.48 0.65 -11.35 16 7 C -0.53 -32.78 9.66 25.60 0.25 -32.54 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C 0.01 0.36 3.93 29.85 0.12 0.47 16 10 C -0.06 -2.88 4.78 30.59 0.15 -2.73 16 11 C 0.08 3.33 3.22 44.17 0.14 3.47 16 12 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 13 N -0.82 -30.93 8.44 -171.80 -1.45 -32.38 16 14 C 0.49 19.31 5.49 88.02 0.48 19.79 16 15 O -0.58 -25.34 15.43 -4.30 -0.07 -25.41 16 16 N -0.70 -24.29 7.72 -311.21 -2.40 -26.70 16 17 C 0.46 13.19 7.22 133.65 0.96 14.15 16 18 C -0.27 -7.99 8.90 22.36 0.20 -7.79 16 19 C 0.00 0.09 10.09 22.31 0.23 0.32 16 20 C -0.22 -2.17 10.00 22.05 0.22 -1.94 16 21 C 0.15 1.20 10.29 83.50 0.86 2.06 16 22 N -0.44 -7.73 2.62 -526.34 -1.38 -9.10 16 23 C 0.13 1.91 5.42 85.63 0.46 2.37 16 24 C -0.12 -2.07 5.42 -19.87 -0.11 -2.18 16 25 C -0.11 -2.53 9.32 22.27 0.21 -2.32 16 26 C -0.15 -3.17 10.05 22.27 0.22 -2.94 16 27 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 28 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16 29 C -0.10 -1.02 9.70 22.27 0.22 -0.81 16 30 H 0.27 16.10 8.31 -92.72 -0.77 15.33 16 31 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 32 H 0.03 1.57 6.81 -2.38 -0.02 1.55 16 33 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.34 13.13 8.58 -89.70 -0.77 12.37 16 36 H 0.34 11.50 9.06 -89.69 -0.81 10.69 16 37 H 0.11 4.08 6.29 -2.91 -0.02 4.06 16 38 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.23 -0.96 7.99 -2.91 -0.02 -0.98 16 41 H 0.15 0.55 7.88 -2.39 -0.02 0.54 16 42 H 0.09 1.86 7.42 -2.39 -0.02 1.84 16 43 H 0.11 3.13 6.89 -2.91 -0.02 3.11 16 44 H 0.12 2.39 8.06 -2.91 -0.02 2.36 16 45 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 46 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 47 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 Total: -1.00 -89.97 393.00 1.76 -88.20 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.64 Total: 30.41 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.52 Total: -12.61 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -4.93 Total: -129.75 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.07 Total: -25.41 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.16 kcal Total: -89.97 1.76 -88.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825876530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.369 kcal (2) G-P(sol) polarization free energy of solvation -89.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds