Wall clock time and date at job start Tue Mar 31 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00367 * 2 1 4 4 H 1.48493 * 109.47145 * 269.99885 * 3 2 1 5 5 H 1.48508 * 109.46729 * 30.00029 * 3 2 1 6 6 H 1.48499 * 109.46994 * 149.99834 * 3 2 1 7 7 C 1.37876 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00209 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00207 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47007 * 185.07844 * 9 7 2 11 11 C 1.46893 * 111.00195 * 295.03538 * 10 9 7 12 12 C 1.53243 * 109.33973 * 187.25607 * 11 10 9 13 13 N 1.47078 * 108.52154 * 306.16724 * 12 11 10 14 14 C 1.34774 * 120.88264 * 230.91300 * 13 12 11 15 15 O 1.21579 * 120.00182 * 354.97251 * 14 13 12 16 16 C 1.47582 * 119.99955 * 174.97083 * 14 13 12 17 17 C 1.39656 * 120.19131 * 300.75760 * 16 14 13 18 18 C 1.37833 * 119.91247 * 179.97438 * 17 16 14 19 19 C 1.38527 * 120.31396 * 359.97438 * 18 17 16 20 20 C 1.38072 * 120.39117 * 0.02580 * 19 18 17 21 21 C 1.38766 * 120.07496 * 359.69447 * 20 19 18 22 22 N 1.39665 * 120.15673 * 180.27850 * 21 20 19 23 23 C 1.36656 * 125.67581 * 122.81039 * 22 21 20 24 24 C 1.34811 * 108.18943 * 179.86941 * 23 22 21 25 25 C 1.40993 * 107.48577 * 0.39533 * 24 23 22 26 26 C 1.34802 * 107.48813 * 359.75101 * 25 24 23 27 27 C 1.47082 * 118.23632 * 51.18191 * 13 12 11 28 28 C 1.46898 * 110.99966 * 59.33740 * 10 9 7 29 29 H 0.97003 * 119.99629 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46959 * 65.07937 * 9 7 2 31 31 H 1.08997 * 109.47143 * 305.08124 * 9 7 2 32 32 H 1.08997 * 109.50004 * 67.29578 * 11 10 9 33 33 H 1.09008 * 109.49540 * 307.21119 * 11 10 9 34 34 H 1.09002 * 109.63094 * 186.45892 * 12 11 10 35 35 H 1.09000 * 109.63074 * 65.87459 * 12 11 10 36 36 H 1.07995 * 120.04672 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.83913 * 179.97438 * 18 17 16 38 38 H 1.07998 * 119.80681 * 179.97438 * 19 18 17 39 39 H 1.08001 * 119.95839 * 179.97438 * 20 19 18 40 40 H 1.07991 * 125.90459 * 0.02562 * 23 22 21 41 41 H 1.07993 * 126.25395 * 180.14390 * 24 23 22 42 42 H 1.07997 * 126.25638 * 179.74238 * 25 24 23 43 43 H 1.08003 * 125.90521 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.62483 * 68.52577 * 27 13 12 45 45 H 1.08995 * 109.62935 * 189.10626 * 27 13 12 46 46 H 1.08997 * 109.49488 * 292.70316 * 28 10 9 47 47 H 1.09004 * 109.49166 * 52.78540 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5736 -0.1233 11 6 3.6290 -3.3714 1.0526 12 6 4.3080 -4.7428 0.9710 13 7 3.9747 -5.3528 -0.3252 14 6 3.4883 -6.6078 -0.3945 15 8 3.4054 -7.2841 0.6125 16 6 3.0563 -7.1611 -1.6926 17 6 2.0456 -6.5320 -2.4228 18 6 1.6470 -7.0535 -3.6349 19 6 2.2446 -8.1994 -4.1336 20 6 3.2450 -8.8316 -3.4223 21 6 3.6629 -8.3174 -2.2031 22 7 4.6787 -8.9522 -1.4849 23 6 5.8503 -8.3754 -1.0822 24 6 6.5682 -9.3018 -0.4160 25 6 5.8196 -10.4966 -0.4134 26 6 4.6692 -10.2553 -1.0733 27 6 4.1920 -4.5590 -1.5442 28 6 3.5176 -3.1949 -1.3635 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.7617 0.9325 31 1 3.8752 -0.6030 -0.8404 32 1 2.5471 -3.5021 1.0760 33 1 3.9535 -2.8583 1.9579 34 1 3.9465 -5.3791 1.7788 35 1 5.3883 -4.6219 1.0518 36 1 1.5776 -5.6378 -2.0388 37 1 0.8650 -6.5663 -4.1984 38 1 1.9256 -8.6011 -5.0839 39 1 3.7058 -9.7249 -3.8175 40 1 6.1483 -7.3535 -1.2638 41 1 7.5408 -9.1565 0.0303 42 1 6.1141 -11.4338 0.0352 43 1 3.8771 -10.9686 -1.2470 44 1 5.2611 -4.4204 -1.7051 45 1 3.7539 -5.0737 -2.3992 46 1 2.4373 -3.3280 -1.3065 47 1 3.7614 -2.5536 -2.2106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828517296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:42 Heat of formation + Delta-G solvation = 71.903645 kcal Electronic energy + Delta-G solvation = -29852.073170 eV Core-core repulsion = 26001.423374 eV Total energy + Delta-G solvation = -3850.649795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74888 -40.11465 -38.66848 -37.50480 -34.57752 -33.30863 -32.45970 -31.85810 -30.52601 -29.14832 -28.84716 -28.54680 -25.80291 -24.08662 -23.30500 -23.08271 -22.05500 -20.79014 -20.33417 -20.07511 -19.04726 -18.24246 -17.40546 -16.86459 -16.34175 -15.97562 -15.47899 -14.70132 -14.67295 -14.63961 -14.53562 -14.27153 -14.15366 -13.68782 -13.60502 -13.59486 -13.45521 -12.85156 -12.52712 -12.46181 -12.33767 -12.25166 -12.15642 -12.11056 -11.66468 -11.40839 -11.32861 -11.09600 -10.70334 -10.55005 -10.34773 -10.12995 -9.87197 -9.62141 -9.58974 -9.23857 -8.69458 -8.52818 -8.46923 -8.20975 -7.38508 -6.20504 -4.21652 0.59901 0.84756 2.24139 2.64231 2.78744 3.01332 3.03848 3.20080 3.28897 3.31897 3.35167 4.30473 4.31247 4.50894 4.67786 4.72092 4.78809 4.94223 5.03094 5.12155 5.15129 5.21188 5.30015 5.37755 5.45266 5.46942 5.55074 5.63019 5.64948 5.77922 5.84225 5.90029 5.93910 6.01106 6.07508 6.21960 6.23925 6.26870 6.39626 6.51098 6.60161 6.63061 6.81470 6.91713 6.94352 7.13587 7.38793 7.41449 7.48501 7.87133 7.89675 8.18432 8.32550 8.80359 9.41818 10.92220 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.003150 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.893268 B = 8885.604601 C = 9856.962363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.156 3.844 10 N -0.533 5.533 11 C 0.048 3.952 12 C 0.118 3.882 13 N -0.598 5.598 14 C 0.558 3.442 15 O -0.526 6.526 16 C -0.116 4.116 17 C -0.073 4.073 18 C -0.115 4.115 19 C -0.090 4.090 20 C -0.121 4.121 21 C 0.156 3.844 22 N -0.402 5.402 23 C 0.000 4.000 24 C -0.193 4.193 25 C -0.195 4.195 26 C -0.003 4.003 27 C 0.105 3.895 28 C 0.050 3.950 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 -17.106 -8.616 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.029 3.971 10 N -0.257 5.257 11 C -0.081 4.081 12 C -0.004 4.004 13 N -0.331 5.331 14 C 0.345 3.655 15 O -0.402 6.402 16 C -0.120 4.120 17 C -0.092 4.092 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.140 4.140 21 C 0.064 3.936 22 N -0.076 5.076 23 C -0.127 4.127 24 C -0.217 4.217 25 C -0.219 4.219 26 C -0.130 4.130 27 C -0.018 4.018 28 C -0.080 4.080 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.771 -17.169 -8.228 20.962 hybrid contribution -0.722 1.117 0.028 1.330 sum 8.048 -16.052 -8.200 19.741 Atomic orbital electron populations 1.69923 1.06409 1.27138 1.49980 1.24973 0.94696 0.99277 0.94021 0.86784 0.80402 0.83497 0.78645 1.20151 1.21273 1.18838 1.21650 0.90572 0.94643 1.52508 0.90885 1.20185 0.94682 0.85217 0.97011 1.62405 1.58513 1.03866 1.00900 1.22292 0.98993 0.92020 0.94809 1.21845 1.00050 0.93994 0.84497 1.48103 1.63018 1.13183 1.08785 1.18066 0.77818 0.81526 0.88109 1.90813 1.54748 1.58574 1.36106 1.20056 0.99007 0.97069 0.95883 1.21356 0.94833 0.99197 0.93840 1.21262 1.00134 0.96145 0.95793 1.21205 0.94939 0.95027 0.99711 1.21086 0.98892 1.01331 0.92738 1.17561 0.90850 0.93359 0.91798 1.41281 1.13566 1.09983 1.42732 1.21833 0.86817 0.99332 1.04757 1.20872 1.01325 0.93736 1.05747 1.20878 0.95618 0.99209 1.06204 1.21840 1.01057 0.85047 1.05042 1.22106 1.01236 0.92275 0.86222 1.22245 0.98377 0.92989 0.94361 0.92579 0.95258 0.95452 0.93419 0.90182 0.89354 0.91125 0.84128 0.84468 0.84690 0.84769 0.82682 0.84543 0.84520 0.82280 0.90977 0.90056 0.93153 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.96 55.43 0.77 -25.66 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 20.59 27.37 -169.99 -4.65 15.94 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -5.94 6.69 56.52 0.38 -5.56 16 7 C -0.56 -14.65 8.30 -34.44 -0.29 -14.94 16 8 H 0.07 2.12 6.13 -52.49 -0.32 1.79 16 9 C 0.16 3.50 4.18 -4.97 -0.02 3.48 16 10 N -0.53 -10.18 4.83 -235.76 -1.14 -11.32 16 11 C 0.05 0.88 5.24 -3.70 -0.02 0.86 16 12 C 0.12 1.88 6.58 -3.60 -0.02 1.86 16 13 N -0.60 -9.25 3.01 -173.67 -0.52 -9.77 16 14 C 0.56 9.17 5.60 -12.45 -0.07 9.10 16 15 O -0.53 -10.43 16.33 5.30 0.09 -10.35 16 16 C -0.12 -1.59 4.62 -104.82 -0.48 -2.07 16 17 C -0.07 -0.87 7.75 -39.20 -0.30 -1.17 16 18 C -0.12 -1.05 10.02 -39.62 -0.40 -1.44 16 19 C -0.09 -0.72 10.03 -39.54 -0.40 -1.12 16 20 C -0.12 -1.16 9.77 -39.45 -0.39 -1.55 16 21 C 0.16 1.96 5.86 -83.36 -0.49 1.47 16 22 N -0.40 -5.38 2.42 -60.69 -0.15 -5.53 16 23 C 0.00 -0.01 9.96 -16.62 -0.17 -0.17 16 24 C -0.19 -2.48 10.86 -39.75 -0.43 -2.91 16 25 C -0.19 -2.39 10.86 -39.76 -0.43 -2.82 16 26 C 0.00 -0.04 11.22 -16.62 -0.19 -0.22 16 27 C 0.10 1.45 6.31 -3.60 -0.02 1.43 16 28 C 0.05 0.85 5.15 -3.70 -0.02 0.83 16 29 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.67 7.48 -51.93 -0.39 0.29 16 31 H 0.03 0.61 7.29 -51.93 -0.38 0.24 16 32 H 0.05 1.01 6.92 -51.93 -0.36 0.65 16 33 H 0.08 1.42 8.05 -51.92 -0.42 1.00 16 34 H 0.09 1.46 7.10 -51.93 -0.37 1.09 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.14 1.75 8.05 -52.49 -0.42 1.33 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 41 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 0.99 5.06 -51.93 -0.26 0.73 16 46 H 0.05 0.99 6.79 -51.93 -0.35 0.63 16 47 H 0.08 1.32 8.11 -51.93 -0.42 0.89 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -32.60 378.56 -10.78 -43.38 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.66 Total: 5.07 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.23 Total: -7.48 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -1.03 Total: -52.28 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.65 Total: 15.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.60 -10.78 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828517296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.283 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds